RNA–Protein interactions for RNA: ENST00000509599.5

PTPN20-221, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

TSL 1 (best) BASIC

Gene PTPN20, Length 945 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-221ENST00000509599 ZMYM3Q14202 1370 aa16.56■□□□□ 0.24
PTPN20-221ENST00000509599 CLTCQ00610 1675 aaKnown RBP16.56■□□□□ 0.24
PTPN20-221ENST00000509599 SHANK2Q9UPX8 1470 aa16.55■□□□□ 0.24
PTPN20-221ENST00000509599 SETD1AO15047 1707 aaKnown RBP16.55■□□□□ 0.24
PTPN20-221ENST00000509599 NEURL4Q96JN8 1562 aa16.55■□□□□ 0.24
PTPN20-221ENST00000509599 ARHGAP5Q13017 1502 aa16.55■□□□□ 0.24
PTPN20-221ENST00000509599 PTPRKQ15262 1439 aa16.54■□□□□ 0.24
PTPN20-221ENST00000509599 CDC42BPBQ9Y5S2 1711 aa16.54■□□□□ 0.24
PTPN20-221ENST00000509599 ITSN2Q9NZM3 1697 aa16.52■□□□□ 0.23
PTPN20-221ENST00000509599 DNMT1P26358 1616 aaKnown RBP16.52■□□□□ 0.23
PTPN20-221ENST00000509599 VWDEQ8N2E2 1590 aa16.51■□□□□ 0.23
PTPN20-221ENST00000509599 RANGAP1P46060 587 aaPredicted RBP16.5■□□□□ 0.23
PTPN20-221ENST00000509599 POTEAQ6S8J7 498 aa16.49■□□□□ 0.23
PTPN20-221ENST00000509599 ABCC1P33527 1531 aa16.48■□□□□ 0.23
PTPN20-221ENST00000509599 STRCP1A6NGW2 1772 aa16.47■□□□□ 0.23
PTPN20-221ENST00000509599 A2ML1A8K2U0 1454 aa16.46■□□□□ 0.23
PTPN20-221ENST00000509599 RNF17Q9BXT8 1623 aaKnown RBP16.44■□□□□ 0.22
PTPN20-221ENST00000509599 PREX2Q70Z35 1606 aa16.43■□□□□ 0.22
PTPN20-221ENST00000509599 PITPNM1O00562 1244 aa16.4■□□□□ 0.22
PTPN20-221ENST00000509599 SAMD9LQ8IVG5 1584 aa16.39■□□□□ 0.21
PTPN20-221ENST00000509599 TROQ12816 1431 aaPredicted RBP16.39■□□□□ 0.21
PTPN20-221ENST00000509599 LRRC7Q96NW7 1537 aa16.39■□□□□ 0.21
PTPN20-221ENST00000509599 LRRIQ1Q96JM4 1722 aa16.39■□□□□ 0.21
PTPN20-221ENST00000509599 PLXNC1O60486 1568 aa16.38■□□□□ 0.21
PTPN20-221ENST00000509599 SPDYE2BA6NHP3 402 aa16.38■□□□□ 0.21
PTPN20-221ENST00000509599 SPDYE6P0CI01 402 aa16.38■□□□□ 0.21
PTPN20-221ENST00000509599 SPDYE2Q495Y8 402 aa16.38■□□□□ 0.21
PTPN20-221ENST00000509599 SYNMO15061 1565 aa16.37■□□□□ 0.21
PTPN20-221ENST00000509599 PIP4P2Q8N4L2 257 aa16.36■□□□□ 0.21
PTPN20-221ENST00000509599 CDC42BPAQ5VT25 1732 aa16.36■□□□□ 0.21
PTPN20-221ENST00000509599 DEPDC5O75140 1603 aa16.35■□□□□ 0.21
PTPN20-221ENST00000509599 IQGAP1P46940 1657 aa16.35■□□□□ 0.21
PTPN20-221ENST00000509599 MKRN4PQ13434 485 aaPredicted RBP16.35■□□□□ 0.21
PTPN20-221ENST00000509599 XIRP1Q702N8 1843 aaKnown RBP16.35■□□□□ 0.21
PTPN20-221ENST00000509599 MED14O60244 1454 aa16.34■□□□□ 0.21
PTPN20-221ENST00000509599 CDK11AQ9UQ88 783 aaPredicted RBP16.33■□□□□ 0.2
PTPN20-221ENST00000509599 NPHP4O75161 1426 aaPredicted RBP16.32■□□□□ 0.2
PTPN20-221ENST00000509599 CLIP1P30622 1438 aa16.32■□□□□ 0.2
PTPN20-221ENST00000509599 CSRNP3Q8WYN3 585 aa16.32■□□□□ 0.2
PTPN20-221ENST00000509599 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.31■□□□□ 0.2
PTPN20-221ENST00000509599 ATP1B4Q9UN42 357 aaPredicted RBP16.31■□□□□ 0.2
PTPN20-221ENST00000509599 SRCAPQ6ZRS2 3230 aa16.3■□□□□ 0.2
PTPN20-221ENST00000509599 ATP7AQ04656 1500 aa16.3■□□□□ 0.2
PTPN20-221ENST00000509599 ANKLE2Q86XL3 938 aa16.3■□□□□ 0.2
PTPN20-221ENST00000509599 UPF1Q92900 1129 aaKnown RBP eCLIP16.3■□□□□ 0.2
PTPN20-221ENST00000509599 INO80Q9ULG1 1556 aaPredicted RBP16.3■□□□□ 0.2
PTPN20-221ENST00000509599 A2MP01023 1474 aa16.29■□□□□ 0.2
PTPN20-221ENST00000509599 GGT6Q6P531 493 aa16.29■□□□□ 0.2
PTPN20-221ENST00000509599 SYCP2Q9BX26 1530 aa16.28■□□□□ 0.2
PTPN20-221ENST00000509599 TNRQ92752 1358 aa16.27■□□□□ 0.2
PTPN20-221ENST00000509599 SPAG9O60271 1321 aaKnown RBP16.26■□□□□ 0.19
PTPN20-221ENST00000509599 ZC3H13Q5T200 1668 aaKnown RBP16.26■□□□□ 0.19
PTPN20-221ENST00000509599 ADGBQ8N7X0 1667 aa16.26■□□□□ 0.19
PTPN20-221ENST00000509599 FBXO31Q5XUX0 539 aaPredicted RBP16.25■□□□□ 0.19
PTPN20-221ENST00000509599 FMN1Q68DA7 1419 aa16.25■□□□□ 0.19
PTPN20-221ENST00000509599 UGGT1Q9NYU2 1555 aa16.23■□□□□ 0.19
PTPN20-221ENST00000509599 FAM135BQ49AJ0 1406 aa16.22■□□□□ 0.19
PTPN20-221ENST00000509599 FXR2P51116 673 aaKnown RBP eCLIP16.22■□□□□ 0.19
PTPN20-221ENST00000509599 ZNF692Q9BU19 519 aaPredicted RBP16.22■□□□□ 0.19
PTPN20-221ENST00000509599 PZPP20742 1482 aa16.22■□□□□ 0.19
PTPN20-221ENST00000509599 ROBO1Q9Y6N7 1651 aa16.21■□□□□ 0.19
PTPN20-221ENST00000509599 THEMISQ8N1K5 641 aaPredicted RBP16.21■□□□□ 0.19
PTPN20-221ENST00000509599 FAM135AQ9P2D6 1515 aa16.2■□□□□ 0.18
PTPN20-221ENST00000509599 NLRP1Q9C000 1473 aa16.19■□□□□ 0.18
PTPN20-221ENST00000509599 HNRNPMP52272 730 aaKnown RBP eCLIP16.19■□□□□ 0.18
PTPN20-221ENST00000509599 ZNF777Q9ULD5 760 aaPredicted RBP16.17■□□□□ 0.18
PTPN20-221ENST00000509599 ARHGAP35Q9NRY4 1499 aa16.16■□□□□ 0.18
PTPN20-221ENST00000509599 MIA2Q96PC5 1412 aa16.16■□□□□ 0.18
PTPN20-221ENST00000509599 CLEC11AQ9Y240 323 aa16.15■□□□□ 0.18
PTPN20-221ENST00000509599 SSUH2Q9Y2M2 353 aa16.15■□□□□ 0.18
PTPN20-221ENST00000509599 KDM5DQ9BY66 1539 aa16.14■□□□□ 0.18
PTPN20-221ENST00000509599 EHMT2Q96KQ7 1210 aa16.14■□□□□ 0.17
PTPN20-221ENST00000509599 PHLPP1O60346 1717 aa16.14■□□□□ 0.17
PTPN20-221ENST00000509599 KIAA1107Q9UPP5 1409 aa16.13■□□□□ 0.17
PTPN20-221ENST00000509599 SPDYE1Q8NFV5 336 aaPredicted RBP16.13■□□□□ 0.17
PTPN20-221ENST00000509599 SP7Q8TDD2 431 aaPredicted RBP16.13■□□□□ 0.17
PTPN20-221ENST00000509599 TRIM52Q96A61 297 aa16.13■□□□□ 0.17
PTPN20-221ENST00000509599 GPATCH8Q9UKJ3 1502 aaKnown RBP16.12■□□□□ 0.17
PTPN20-221ENST00000509599 HAX1O00165 279 aa16.11■□□□□ 0.17
PTPN20-221ENST00000509599 LRP6O75581 1613 aa16.09■□□□□ 0.17
PTPN20-221ENST00000509599 UBR1Q8IWV7 1749 aa16.09■□□□□ 0.17
PTPN20-221ENST00000509599 EEA1Q15075 1411 aa16.09■□□□□ 0.17
PTPN20-221ENST00000509599 PLEKHH2Q8IVE3 1493 aa16.09■□□□□ 0.17
PTPN20-221ENST00000509599 JCADQ9P266 1359 aa16.07■□□□□ 0.16
PTPN20-221ENST00000509599 CCDC18Q5T9S5 1454 aa16.07■□□□□ 0.16
PTPN20-221ENST00000509599 MAP3K1Q13233 1512 aa16.07■□□□□ 0.16
PTPN20-221ENST00000509599 CFAP65Q6ZU64 1925 aaKnown RBP16.07■□□□□ 0.16
PTPN20-221ENST00000509599 SCAF11Q99590 1463 aaKnown RBP16.06■□□□□ 0.16
PTPN20-221ENST00000509599 DHX29Q7Z478 1369 aaKnown RBP16.06■□□□□ 0.16
PTPN20-221ENST00000509599 COL16A1Q07092 1604 aaPredicted RBP16.05■□□□□ 0.16
PTPN20-221ENST00000509599 LRRC9Q6ZRR7 1453 aa16.04■□□□□ 0.16
PTPN20-221ENST00000509599 TMEM94Q12767 1356 aa16.04■□□□□ 0.16
PTPN20-221ENST00000509599 KIF3BO15066 747 aa16.04■□□□□ 0.16
PTPN20-221ENST00000509599 CDK12Q9NYV4 1490 aaPredicted RBP16.03■□□□□ 0.16
PTPN20-221ENST00000509599 WASHC2CQ9Y4E1 1318 aa16.03■□□□□ 0.16
PTPN20-221ENST00000509599 ZNF772Q68DY9 489 aaPredicted RBP16.03■□□□□ 0.16
PTPN20-221ENST00000509599 LTKP29376 864 aa16.01■□□□□ 0.15
PTPN20-221ENST00000509599 NCOA2Q15596 1464 aa16.01■□□□□ 0.15
PTPN20-221ENST00000509599 ARHGAP23Q9P227 1491 aa16.01■□□□□ 0.15
PTPN20-221ENST00000509599 RTEL1-TNFRSF6BF6WH68 1400 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms