RNA–Protein interactions for RNA: ENST00000508800.1

NEDD9-212, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 834 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-212ENST00000508800 ZNF777Q9ULD5 760 aaPredicted RBP18.63■□□□□ 0.57
NEDD9-212ENST00000508800 SYNMO15061 1565 aa18.63■□□□□ 0.57
NEDD9-212ENST00000508800 CHIC1Q5VXU3 224 aa18.62■□□□□ 0.57
NEDD9-212ENST00000508800 TNRQ92752 1358 aa18.62■□□□□ 0.57
NEDD9-212ENST00000508800 GPATCH8Q9UKJ3 1502 aaKnown RBP18.6■□□□□ 0.57
NEDD9-212ENST00000508800 PZPP20742 1482 aa18.59■□□□□ 0.57
NEDD9-212ENST00000508800 NLRP1Q9C000 1473 aa18.59■□□□□ 0.57
NEDD9-212ENST00000508800 NPHP4O75161 1426 aaPredicted RBP18.59■□□□□ 0.57
NEDD9-212ENST00000508800 HNRNPMP52272 730 aaKnown RBP eCLIP18.59■□□□□ 0.57
NEDD9-212ENST00000508800 THEMISQ8N1K5 641 aaPredicted RBP18.59■□□□□ 0.57
NEDD9-212ENST00000508800 IQGAP1P46940 1657 aa18.59■□□□□ 0.57
NEDD9-212ENST00000508800 UGGT1Q9NYU2 1555 aa18.56■□□□□ 0.56
NEDD9-212ENST00000508800 KDM5DQ9BY66 1539 aa18.56■□□□□ 0.56
NEDD9-212ENST00000508800 FYCO1Q9BQS8 1478 aa18.56■□□□□ 0.56
NEDD9-212ENST00000508800 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.55■□□□□ 0.56
NEDD9-212ENST00000508800 LRRC7Q96NW7 1537 aa18.55■□□□□ 0.56
NEDD9-212ENST00000508800 CFDP1Q9UEE9 299 aaPredicted RBP18.54■□□□□ 0.56
NEDD9-212ENST00000508800 RTEL1-TNFRSF6BF6WH68 1400 aa18.54■□□□□ 0.56
NEDD9-212ENST00000508800 RGS17Q9UGC6 210 aaPredicted RBP18.53■□□□□ 0.56
NEDD9-212ENST00000508800 STRCP1A6NGW2 1772 aa18.53■□□□□ 0.56
NEDD9-212ENST00000508800 DHX29Q7Z478 1369 aaKnown RBP18.52■□□□□ 0.55
NEDD9-212ENST00000508800 MIA2Q96PC5 1412 aa18.51■□□□□ 0.55
NEDD9-212ENST00000508800 CCNB3Q8WWL7 1395 aa18.51■□□□□ 0.55
NEDD9-212ENST00000508800 FBXO31Q5XUX0 539 aaPredicted RBP18.49■□□□□ 0.55
NEDD9-212ENST00000508800 SENP3Q9H4L4 574 aaPredicted RBP18.46■□□□□ 0.55
NEDD9-212ENST00000508800 WASHC2CQ9Y4E1 1318 aa18.46■□□□□ 0.55
NEDD9-212ENST00000508800 ZC3H13Q5T200 1668 aaKnown RBP18.44■□□□□ 0.54
NEDD9-212ENST00000508800 KIF3BO15066 747 aa18.44■□□□□ 0.54
NEDD9-212ENST00000508800 MBD5Q9P267 1494 aa18.44■□□□□ 0.54
NEDD9-212ENST00000508800 EHMT2Q96KQ7 1210 aa18.43■□□□□ 0.54
NEDD9-212ENST00000508800 FAM135BQ49AJ0 1406 aa18.42■□□□□ 0.54
NEDD9-212ENST00000508800 POTEAQ6S8J7 498 aa18.41■□□□□ 0.54
NEDD9-212ENST00000508800 XIRP1Q702N8 1843 aaKnown RBP18.39■□□□□ 0.54
NEDD9-212ENST00000508800 MTUS2Q5JR59 1369 aa18.39■□□□□ 0.53
NEDD9-212ENST00000508800 TIAM1Q13009 1591 aa18.38■□□□□ 0.53
NEDD9-212ENST00000508800 CCDC141Q6ZP82 1450 aa18.38■□□□□ 0.53
NEDD9-212ENST00000508800 SCAF11Q99590 1463 aaKnown RBP18.38■□□□□ 0.53
NEDD9-212ENST00000508800 SETD1AO15047 1707 aaKnown RBP18.36■□□□□ 0.53
NEDD9-212ENST00000508800 UBR1Q8IWV7 1749 aa18.35■□□□□ 0.53
NEDD9-212ENST00000508800 RSPH4AQ5TD94 716 aa18.35■□□□□ 0.53
NEDD9-212ENST00000508800 ZNF644Q9H582 1327 aaPredicted RBP18.34■□□□□ 0.53
NEDD9-212ENST00000508800 LRRC9Q6ZRR7 1453 aa18.33■□□□□ 0.53
NEDD9-212ENST00000508800 EHBP1L1Q8N3D4 1523 aa18.33■□□□□ 0.52
NEDD9-212ENST00000508800 ERVK-7P63135 1459 aa18.33■□□□□ 0.52
NEDD9-212ENST00000508800 ABCC3O15438 1527 aa18.32■□□□□ 0.52
NEDD9-212ENST00000508800 SLIT1O75093 1534 aa18.32■□□□□ 0.52
NEDD9-212ENST00000508800 ROBO1Q9Y6N7 1651 aa18.31■□□□□ 0.52
NEDD9-212ENST00000508800 SRCAPQ6ZRS2 3230 aa18.31■□□□□ 0.52
NEDD9-212ENST00000508800 ARHGAP23Q9P227 1491 aa18.31■□□□□ 0.52
NEDD9-212ENST00000508800 CEP162Q5TB80 1403 aa18.29■□□□□ 0.52
NEDD9-212ENST00000508800 EIF2AK4Q9P2K8 1649 aaKnown RBP18.27■□□□□ 0.52
NEDD9-212ENST00000508800 ARHGEF5Q12774 1597 aa18.27■□□□□ 0.52
NEDD9-212ENST00000508800 CAMSAP2Q08AD1 1489 aa18.26■□□□□ 0.51
NEDD9-212ENST00000508800 EID1Q9Y6B2 187 aa18.26■□□□□ 0.51
NEDD9-212ENST00000508800 NCOA2Q15596 1464 aa18.26■□□□□ 0.51
NEDD9-212ENST00000508800 TXNDC2Q86VQ3 553 aa18.25■□□□□ 0.51
NEDD9-212ENST00000508800 TMEM94Q12767 1356 aa18.25■□□□□ 0.51
NEDD9-212ENST00000508800 CFAP65Q6ZU64 1925 aaKnown RBP18.25■□□□□ 0.51
NEDD9-212ENST00000508800 JCADQ9P266 1359 aa18.24■□□□□ 0.51
NEDD9-212ENST00000508800 PHLPP1O60346 1717 aa18.23■□□□□ 0.51
NEDD9-212ENST00000508800 LTKP29376 864 aa18.23■□□□□ 0.51
NEDD9-212ENST00000508800 TSPY4P0CV99 314 aa18.22■□□□□ 0.51
NEDD9-212ENST00000508800 TSPY10P0CW01 314 aa18.22■□□□□ 0.51
NEDD9-212ENST00000508800 UPF1Q92900 1129 aaKnown RBP eCLIP18.22■□□□□ 0.51
NEDD9-212ENST00000508800 MAP3K1Q13233 1512 aa18.22■□□□□ 0.51
NEDD9-212ENST00000508800 NKTRP30414 1462 aaKnown RBP18.21■□□□□ 0.51
NEDD9-212ENST00000508800 KDM5AP29375 1690 aaKnown RBP18.21■□□□□ 0.51
NEDD9-212ENST00000508800 CEP152O94986 1710 aa18.2■□□□□ 0.5
NEDD9-212ENST00000508800 MROH1Q8NDA8 1641 aa18.2■□□□□ 0.5
NEDD9-212ENST00000508800 PRDM15P57071 1507 aaPredicted RBP18.19■□□□□ 0.5
NEDD9-212ENST00000508800 KCNA6P17658 529 aa18.19■□□□□ 0.5
NEDD9-212ENST00000508800 ZNF772Q68DY9 489 aaPredicted RBP18.19■□□□□ 0.5
NEDD9-212ENST00000508800 MAST1Q9Y2H9 1570 aa18.19■□□□□ 0.5
NEDD9-212ENST00000508800 ARHGAP31Q2M1Z3 1444 aa18.18■□□□□ 0.5
NEDD9-212ENST00000508800 TMEM2Q9UHN6 1383 aa18.17■□□□□ 0.5
NEDD9-212ENST00000508800 FGD6Q6ZV73 1430 aa18.17■□□□□ 0.5
NEDD9-212ENST00000508800 SPATA31A6Q5VVP1 1343 aa18.17■□□□□ 0.5
NEDD9-212ENST00000508800 MSH6P52701 1360 aa18.17■□□□□ 0.5
NEDD9-212ENST00000508800 PROSER2Q86WR7 435 aaPredicted RBP18.16■□□□□ 0.5
NEDD9-212ENST00000508800 NWD1Q149M9 1564 aa18.16■□□□□ 0.5
NEDD9-212ENST00000508800 PIK3C2BO00750 1634 aa18.15■□□□□ 0.5
NEDD9-212ENST00000508800 CDK12Q9NYV4 1490 aaPredicted RBP18.14■□□□□ 0.5
NEDD9-212ENST00000508800 COL16A1Q07092 1604 aaPredicted RBP18.14■□□□□ 0.49
NEDD9-212ENST00000508800 SLAIN2Q9P270 581 aa18.13■□□□□ 0.49
NEDD9-212ENST00000508800 EFCAB6Q5THR3 1501 aa18.13■□□□□ 0.49
NEDD9-212ENST00000508800 TET3O43151 1660 aa18.12■□□□□ 0.49
NEDD9-212ENST00000508800 MEX3CQ5U5Q3 659 aaKnown RBP18.11■□□□□ 0.49
NEDD9-212ENST00000508800 SHPRHQ149N8 1683 aa18.1■□□□□ 0.49
NEDD9-212ENST00000508800 DUOX2Q9NRD8 1548 aa18.1■□□□□ 0.49
NEDD9-212ENST00000508800 STAG3Q9UJ98 1225 aa18.1■□□□□ 0.49
NEDD9-212ENST00000508800 LRP6O75581 1613 aa18.09■□□□□ 0.49
NEDD9-212ENST00000508800 TRIM52Q96A61 297 aa18.09■□□□□ 0.49
NEDD9-212ENST00000508800 RXRBP28702 533 aa18.08■□□□□ 0.48
NEDD9-212ENST00000508800 NCOA3Q9Y6Q9 1424 aa18.06■□□□□ 0.48
NEDD9-212ENST00000508800 AHDC1Q5TGY3 1603 aaPredicted RBP18.05■□□□□ 0.48
NEDD9-212ENST00000508800 SLC26A8Q96RN1 970 aa18.05■□□□□ 0.48
NEDD9-212ENST00000508800 CHD2O14647 1828 aaKnown RBP18.04■□□□□ 0.48
NEDD9-212ENST00000508800 ERBINQ96RT1 1412 aa18.04■□□□□ 0.48
NEDD9-212ENST00000508800 RBM33Q96EV2 1170 aaKnown RBP18.02■□□□□ 0.48
NEDD9-212ENST00000508800 ADGRB3O60242 1522 aa18.02■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms