RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 KANK4Q5T7N3 995 aaPredicted RBP18.29■□□□□ 0.52
HMGCS1-204ENST00000507293 DNMT1P26358 1616 aaKnown RBP18.27■□□□□ 0.52
HMGCS1-204ENST00000507293 RNF17Q9BXT8 1623 aaKnown RBP18.27■□□□□ 0.52
HMGCS1-204ENST00000507293 A2ML1A8K2U0 1454 aa18.27■□□□□ 0.52
HMGCS1-204ENST00000507293 NCKAP5LQ9HCH0 1330 aa18.27■□□□□ 0.52
HMGCS1-204ENST00000507293 MYOM3Q5VTT5 1437 aa18.27■□□□□ 0.52
HMGCS1-204ENST00000507293 PZPP20742 1482 aa18.26■□□□□ 0.51
HMGCS1-204ENST00000507293 TCOF1Q13428 1488 aaKnown RBP18.26■□□□□ 0.51
HMGCS1-204ENST00000507293 TSPY4P0CV99 314 aa18.26■□□□□ 0.51
HMGCS1-204ENST00000507293 TSPY10P0CW01 314 aa18.26■□□□□ 0.51
HMGCS1-204ENST00000507293 EIF2AK4Q9P2K8 1649 aaKnown RBP18.26■□□□□ 0.51
HMGCS1-204ENST00000507293 POLR1AO95602 1720 aaPredicted RBP18.26■□□□□ 0.51
HMGCS1-204ENST00000507293 MIA2Q96PC5 1412 aa18.25■□□□□ 0.51
HMGCS1-204ENST00000507293 CROCC2H7BZ55 1655 aa18.25■□□□□ 0.51
HMGCS1-204ENST00000507293 ZC3H13Q5T200 1668 aaKnown RBP18.25■□□□□ 0.51
HMGCS1-204ENST00000507293 IQSEC2Q5JU85 1478 aa18.23■□□□□ 0.51
HMGCS1-204ENST00000507293 TNRQ92752 1358 aa18.23■□□□□ 0.51
HMGCS1-204ENST00000507293 WASHC2CQ9Y4E1 1318 aa18.23■□□□□ 0.51
HMGCS1-204ENST00000507293 PKD2Q13563 968 aa18.22■□□□□ 0.51
HMGCS1-204ENST00000507293 FBXO31Q5XUX0 539 aaPredicted RBP18.22■□□□□ 0.51
HMGCS1-204ENST00000507293 CEP152O94986 1710 aa18.21■□□□□ 0.51
HMGCS1-204ENST00000507293 MROH1Q8NDA8 1641 aa18.2■□□□□ 0.5
HMGCS1-204ENST00000507293 PTPN23Q9H3S7 1636 aa18.2■□□□□ 0.5
HMGCS1-204ENST00000507293 ABCC3O15438 1527 aa18.2■□□□□ 0.5
HMGCS1-204ENST00000507293 ZNF335Q9H4Z2 1342 aaPredicted RBP18.2■□□□□ 0.5
HMGCS1-204ENST00000507293 NEURL4Q96JN8 1562 aa18.18■□□□□ 0.5
HMGCS1-204ENST00000507293 DUOX2Q9NRD8 1548 aa18.18■□□□□ 0.5
HMGCS1-204ENST00000507293 NLRP1Q9C000 1473 aa18.16■□□□□ 0.5
HMGCS1-204ENST00000507293 SHANK2Q9UPX8 1470 aa18.15■□□□□ 0.5
HMGCS1-204ENST00000507293 APLP2Q06481 763 aa18.15■□□□□ 0.5
HMGCS1-204ENST00000507293 SPATA31D1Q6ZQQ2 1576 aa18.15■□□□□ 0.5
HMGCS1-204ENST00000507293 UGGT1Q9NYU2 1555 aa18.15■□□□□ 0.5
HMGCS1-204ENST00000507293 CFAP65Q6ZU64 1925 aaKnown RBP18.15■□□□□ 0.5
HMGCS1-204ENST00000507293 ABCC5O15440 1437 aa18.14■□□□□ 0.49
HMGCS1-204ENST00000507293 ERVK-7P63135 1459 aa18.12■□□□□ 0.49
HMGCS1-204ENST00000507293 PRDM15P57071 1507 aaPredicted RBP18.12■□□□□ 0.49
HMGCS1-204ENST00000507293 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.11■□□□□ 0.494e-9■■□□□ 14.1
HMGCS1-204ENST00000507293 KIF15Q9NS87 1388 aa18.11■□□□□ 0.49
HMGCS1-204ENST00000507293 DAPK1P53355 1430 aa18.11■□□□□ 0.49
HMGCS1-204ENST00000507293 FGD6Q6ZV73 1430 aa18.11■□□□□ 0.49
HMGCS1-204ENST00000507293 DEPDC5O75140 1603 aa18.11■□□□□ 0.49
HMGCS1-204ENST00000507293 ERBINQ96RT1 1412 aa18.09■□□□□ 0.49
HMGCS1-204ENST00000507293 IQGAP1P46940 1657 aa18.09■□□□□ 0.49
HMGCS1-204ENST00000507293 UBR1Q8IWV7 1749 aa18.08■□□□□ 0.48
HMGCS1-204ENST00000507293 THEMISQ8N1K5 641 aaPredicted RBP18.07■□□□□ 0.48
HMGCS1-204ENST00000507293 VWDEQ8N2E2 1590 aa18.06■□□□□ 0.48
HMGCS1-204ENST00000507293 ANKLE2Q86XL3 938 aa18.06■□□□□ 0.48
HMGCS1-204ENST00000507293 RRP7BPQ9NSQ0 103 aa18.06■□□□□ 0.48
HMGCS1-204ENST00000507293 CPS1P31327 1500 aa18.06■□□□□ 0.48
HMGCS1-204ENST00000507293 MED14O60244 1454 aa18.06■□□□□ 0.48
HMGCS1-204ENST00000507293 NPHP4O75161 1426 aaPredicted RBP18.06■□□□□ 0.48
HMGCS1-204ENST00000507293 UBAP1LF5GYI3 381 aa18.05■□□□□ 0.48
HMGCS1-204ENST00000507293 ARHGAP31Q2M1Z3 1444 aa18.02■□□□□ 0.48
HMGCS1-204ENST00000507293 DISP3Q9P2K9 1392 aa18.02■□□□□ 0.47
HMGCS1-204ENST00000507293 STRCP1A6NGW2 1772 aa18.01■□□□□ 0.47
HMGCS1-204ENST00000507293 ANKRD30AQ9BXX3 1397 aa18.01■□□□□ 0.47
HMGCS1-204ENST00000507293 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18■□□□□ 0.473e-26■■■■■ 33.2
HMGCS1-204ENST00000507293 CHIC2Q9UKJ5 165 aa18■□□□□ 0.47
HMGCS1-204ENST00000507293 PIK3C2BO00750 1634 aa18■□□□□ 0.47
HMGCS1-204ENST00000507293 KANK1Q14678 1352 aa17.98■□□□□ 0.47
HMGCS1-204ENST00000507293 ADGRL2O95490 1459 aa17.98■□□□□ 0.47
HMGCS1-204ENST00000507293 LMTK2Q8IWU2 1503 aa17.98■□□□□ 0.47
HMGCS1-204ENST00000507293 SLIT1O75093 1534 aa17.97■□□□□ 0.47
HMGCS1-204ENST00000507293 SYNMO15061 1565 aa17.96■□□□□ 0.47
HMGCS1-204ENST00000507293 SCAF11Q99590 1463 aaKnown RBP17.96■□□□□ 0.47
HMGCS1-204ENST00000507293 ARHGAP23Q9P227 1491 aa17.95■□□□□ 0.46
HMGCS1-204ENST00000507293 EFCAB6Q5THR3 1501 aa17.95■□□□□ 0.46
HMGCS1-204ENST00000507293 KDM5AP29375 1690 aaKnown RBP17.95■□□□□ 0.46
HMGCS1-204ENST00000507293 FAM50AQ14320 339 aaKnown RBP17.94■□□□□ 0.46
HMGCS1-204ENST00000507293 ALKQ9UM73 1620 aa17.92■□□□□ 0.46
HMGCS1-204ENST00000507293 SCAF1Q9H7N4 1312 aaKnown RBP17.92■□□□□ 0.46
HMGCS1-204ENST00000507293 TOM1O60784 492 aa17.91■□□□□ 0.46
HMGCS1-204ENST00000507293 ILDR2Q71H61 639 aa17.91■□□□□ 0.46
HMGCS1-204ENST00000507293 LRRC7Q96NW7 1537 aa17.9■□□□□ 0.46
HMGCS1-204ENST00000507293 PIP4K2BP78356 416 aa17.9■□□□□ 0.46
HMGCS1-204ENST00000507293 LTKP29376 864 aa17.89■□□□□ 0.45
HMGCS1-204ENST00000507293 TXNDC2Q86VQ3 553 aa17.89■□□□□ 0.45
HMGCS1-204ENST00000507293 ANKRD50Q9ULJ7 1429 aa17.89■□□□□ 0.45
HMGCS1-204ENST00000507293 TET3O43151 1660 aa17.88■□□□□ 0.45
HMGCS1-204ENST00000507293 XIRP1Q702N8 1843 aaKnown RBP17.88■□□□□ 0.45
HMGCS1-204ENST00000507293 TMEM2Q9UHN6 1383 aa17.88■□□□□ 0.45
HMGCS1-204ENST00000507293 NOS1P29475 1434 aa17.88■□□□□ 0.45
HMGCS1-204ENST00000507293 ADGRB3O60242 1522 aa17.88■□□□□ 0.45
HMGCS1-204ENST00000507293 GCC2Q8IWJ2 1684 aa17.87■□□□□ 0.45
HMGCS1-204ENST00000507293 STAG3Q9UJ98 1225 aa17.87■□□□□ 0.45
HMGCS1-204ENST00000507293 UNC13BO14795 1591 aa17.87■□□□□ 0.45
HMGCS1-204ENST00000507293 MYO5BQ9ULV0 1848 aa17.86■□□□□ 0.45
HMGCS1-204ENST00000507293 HSPA1LP34931 641 aa17.86■□□□□ 0.45
HMGCS1-204ENST00000507293 EID1Q9Y6B2 187 aa17.86■□□□□ 0.45
HMGCS1-204ENST00000507293 RPRD2Q5VT52 1461 aaKnown RBP17.84■□□□□ 0.45
HMGCS1-204ENST00000507293 IDI1Q13907 227 aa17.84■□□□□ 0.45
HMGCS1-204ENST00000507293 MED1Q15648 1581 aaPredicted RBP17.83■□□□□ 0.44
HMGCS1-204ENST00000507293 E9PCH4 1651 aa17.8■□□□□ 0.44
HMGCS1-204ENST00000507293 IQGAP3Q86VI3 1631 aa17.79■□□□□ 0.44
HMGCS1-204ENST00000507293 ROCK1Q13464 1354 aa17.79■□□□□ 0.44
HMGCS1-204ENST00000507293 SOCS7O14512 581 aa17.78■□□□□ 0.44
HMGCS1-204ENST00000507293 TMEM131LA2VDJ0 1609 aa17.78■□□□□ 0.44
HMGCS1-204ENST00000507293 SLC52A1Q9NWF4 448 aa17.77■□□□□ 0.44
HMGCS1-204ENST00000507293 NWD1Q149M9 1564 aa17.76■□□□□ 0.43
HMGCS1-204ENST00000507293 SLC26A8Q96RN1 970 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms