RNA–Protein interactions for RNA: ENST00000506233.5

SCLT1-207, Transcript of sodium channel and clathrin linker 1, humanhuman

TSL 2

Gene SCLT1, Length 3,673 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-207ENST00000506233 ARID3CA6NKF2 412 aa8.95□□□□□ -0.98
SCLT1-207ENST00000506233 ZNF644Q9H582 1327 aaPredicted RBP8.95□□□□□ -0.98
SCLT1-207ENST00000506233 MAGI2Q86UL8 1455 aa8.95□□□□□ -0.98
SCLT1-207ENST00000506233 TEX14Q8IWB6 1497 aa8.94□□□□□ -0.98
SCLT1-207ENST00000506233 PPRC1Q5VV67 1664 aaKnown RBP8.94□□□□□ -0.98
SCLT1-207ENST00000506233 PLXNC1O60486 1568 aa8.93□□□□□ -0.98
SCLT1-207ENST00000506233 PTPRGP23470 1445 aa8.93□□□□□ -0.98
SCLT1-207ENST00000506233 ZMYND15Q9H091 742 aa8.92□□□□□ -0.98
SCLT1-207ENST00000506233 CADPS2Q86UW7 1296 aa8.92□□□□□ -0.98
SCLT1-207ENST00000506233 SHANK2Q9UPX8 1470 aa8.91□□□□□ -0.98
SCLT1-207ENST00000506233 JPH4Q96JJ6 628 aa8.91□□□□□ -0.98
SCLT1-207ENST00000506233 UACAQ9BZF9 1416 aa8.91□□□□□ -0.98
SCLT1-207ENST00000506233 ROCK1Q13464 1354 aa8.91□□□□□ -0.98
SCLT1-207ENST00000506233 BCORL1Q5H9F3 1711 aa8.9□□□□□ -0.98
SCLT1-207ENST00000506233 VWDEQ8N2E2 1590 aa8.9□□□□□ -0.98
SCLT1-207ENST00000506233 INO80Q9ULG1 1556 aaPredicted RBP8.9□□□□□ -0.98
SCLT1-207ENST00000506233 NCOA1Q15788 1441 aa8.9□□□□□ -0.99
SCLT1-207ENST00000506233 ABCC1P33527 1531 aa8.9□□□□□ -0.99
SCLT1-207ENST00000506233 CLSPNQ9HAW4 1339 aa8.89□□□□□ -0.99
SCLT1-207ENST00000506233 GPBP1L1Q9HC44 474 aaPredicted RBP8.89□□□□□ -0.99
SCLT1-207ENST00000506233 POLA2Q14181 598 aa8.88□□□□□ -0.99
SCLT1-207ENST00000506233 IQGAP3Q86VI3 1631 aa8.88□□□□□ -0.99
SCLT1-207ENST00000506233 MIER1Q8N108 512 aa8.87□□□□□ -0.99
SCLT1-207ENST00000506233 PLA2R1Q13018 1463 aa8.87□□□□□ -0.99
SCLT1-207ENST00000506233 FRMPD1Q5SYB0 1578 aa8.87□□□□□ -0.99
SCLT1-207ENST00000506233 IFT172Q9UG01 1749 aa8.86□□□□□ -0.99
SCLT1-207ENST00000506233 KIDINS220Q9ULH0 1771 aa8.86□□□□□ -0.99
SCLT1-207ENST00000506233 ARAP3Q8WWN8 1544 aa8.86□□□□□ -0.99
SCLT1-207ENST00000506233 SYCP2Q9BX26 1530 aa8.86□□□□□ -0.99
SCLT1-207ENST00000506233 RSPH6AQ9H0K4 717 aa8.86□□□□□ -0.99
SCLT1-207ENST00000506233 E9PCH4 1651 aa8.86□□□□□ -0.99
SCLT1-207ENST00000506233 ZEB1P37275 1124 aaPredicted RBP8.86□□□□□ -0.99
SCLT1-207ENST00000506233 SPATA31E1Q6ZUB1 1445 aa8.85□□□□□ -0.99
SCLT1-207ENST00000506233 ZFYVE16Q7Z3T8 1539 aa8.85□□□□□ -0.99
SCLT1-207ENST00000506233 MAP3K4Q9Y6R4 1608 aa8.85□□□□□ -0.99
SCLT1-207ENST00000506233 MTUS2Q5JR59 1369 aa8.84□□□□□ -0.99
SCLT1-207ENST00000506233 ANKRD30BQ9BXX2 1392 aa8.84□□□□□ -0.99
SCLT1-207ENST00000506233 STK25O00506 426 aa8.83□□□□□ -1
SCLT1-207ENST00000506233 RICTORQ6R327 1708 aa8.82□□□□□ -1
SCLT1-207ENST00000506233 SIN3AQ96ST3 1273 aa8.82□□□□□ -1
SCLT1-207ENST00000506233 RPRD2Q5VT52 1461 aaKnown RBP8.82□□□□□ -1
SCLT1-207ENST00000506233 CCER1Q8TC90 406 aaPredicted RBP8.82□□□□□ -1
SCLT1-207ENST00000506233 RNF17Q9BXT8 1623 aaKnown RBP8.81□□□□□ -1
SCLT1-207ENST00000506233 KDM5CP41229 1560 aa8.81□□□□□ -1
SCLT1-207ENST00000506233 TRPM1Q7Z4N2 1603 aa8.81□□□□□ -1
SCLT1-207ENST00000506233 SPINK5Q9NQ38 1064 aaPredicted RBP8.81□□□□□ -1
SCLT1-207ENST00000506233 SEMA3EO15041 775 aa8.8□□□□□ -1
SCLT1-207ENST00000506233 IL27Q8NEV9 243 aa8.8□□□□□ -1
SCLT1-207ENST00000506233 MROH2AA6NES4 1674 aa8.8□□□□□ -1
SCLT1-207ENST00000506233 IGSF3O75054 1194 aa8.79□□□□□ -1
SCLT1-207ENST00000506233 CHMP7Q8WUX9 453 aaPredicted RBP8.79□□□□□ -1
SCLT1-207ENST00000506233 KIF13AQ9H1H9 1805 aa8.79□□□□□ -1
SCLT1-207ENST00000506233 CEP152O94986 1710 aa8.79□□□□□ -1
SCLT1-207ENST00000506233 CARMIL2Q6F5E8 1435 aa8.79□□□□□ -1
SCLT1-207ENST00000506233 MKRN3Q13064 507 aaKnown RBP8.78□□□□□ -1
SCLT1-207ENST00000506233 RIMBP3CA6NJZ7 1639 aa8.78□□□□□ -1
SCLT1-207ENST00000506233 RIMBP3BA6NNM3 1639 aa8.78□□□□□ -1
SCLT1-207ENST00000506233 RIMBP3Q9UFD9 1639 aa8.78□□□□□ -1
SCLT1-207ENST00000506233 APBB1O00213 710 aa8.77□□□□□ -1.01
SCLT1-207ENST00000506233 ABCA6Q8N139 1617 aa8.77□□□□□ -1.01
SCLT1-207ENST00000506233 ZMYND10O75800 440 aa8.77□□□□□ -1.01
SCLT1-207ENST00000506233 CCDC9Q9Y3X0 531 aaKnown RBP8.77□□□□□ -1.01
SCLT1-207ENST00000506233 PLCH2O75038 1416 aa8.77□□□□□ -1.01
SCLT1-207ENST00000506233 FAM135AQ9P2D6 1515 aa8.77□□□□□ -1.01
SCLT1-207ENST00000506233 RIOK3O14730 519 aaKnown RBP8.76□□□□□ -1.01
SCLT1-207ENST00000506233 STAG3Q9UJ98 1225 aa8.76□□□□□ -1.01
SCLT1-207ENST00000506233 TRAPPC8Q9Y2L5 1435 aa8.76□□□□□ -1.01
SCLT1-207ENST00000506233 EIF2AK4Q9P2K8 1649 aaKnown RBP8.76□□□□□ -1.01
SCLT1-207ENST00000506233 ATP10AO60312 1499 aa8.76□□□□□ -1.01
SCLT1-207ENST00000506233 KIAA1107Q9UPP5 1409 aa8.76□□□□□ -1.01
SCLT1-207ENST00000506233 PRDM15P57071 1507 aaPredicted RBP8.75□□□□□ -1.01
SCLT1-207ENST00000506233 C9orf84Q5VXU9 1444 aa8.75□□□□□ -1.01
SCLT1-207ENST00000506233 LAMC1P11047 1609 aa8.75□□□□□ -1.01
SCLT1-207ENST00000506233 SPHKAPQ2M3C7 1700 aa8.75□□□□□ -1.01
SCLT1-207ENST00000506233 ZNF518AQ6AHZ1 1483 aa8.74□□□□□ -1.01
SCLT1-207ENST00000506233 PPP1R15AO75807 674 aaPredicted RBP8.74□□□□□ -1.01
SCLT1-207ENST00000506233 WDR7Q9Y4E6 1490 aa8.74□□□□□ -1.01
SCLT1-207ENST00000506233 PIK3C2BO00750 1634 aa8.74□□□□□ -1.01
SCLT1-207ENST00000506233 CLTCL1P53675 1640 aa8.74□□□□□ -1.01
SCLT1-207ENST00000506233 CCDC141Q6ZP82 1450 aa8.74□□□□□ -1.01
SCLT1-207ENST00000506233 MYOM1P52179 1685 aa8.73□□□□□ -1.01
SCLT1-207ENST00000506233 ZNF428Q96B54 188 aa8.73□□□□□ -1.01
SCLT1-207ENST00000506233 IQGAP1P46940 1657 aa8.73□□□□□ -1.01
SCLT1-207ENST00000506233 UHRF1BP1Q6BDS2 1440 aa8.73□□□□□ -1.01
SCLT1-207ENST00000506233 NEURL4Q96JN8 1562 aa8.73□□□□□ -1.01
SCLT1-207ENST00000506233 BCL11BQ9C0K0 894 aaPredicted RBP8.73□□□□□ -1.01
SCLT1-207ENST00000506233 ZC3H13Q5T200 1668 aaKnown RBP8.72□□□□□ -1.01
SCLT1-207ENST00000506233 MADDQ8WXG6 1647 aa8.72□□□□□ -1.01
SCLT1-207ENST00000506233 C11orf95C9JLR9 678 aaPredicted RBP8.72□□□□□ -1.01
SCLT1-207ENST00000506233 ZNF316A6NFI3 1004 aaPredicted RBP8.72□□□□□ -1.01
SCLT1-207ENST00000506233 GLI2P10070 1586 aa8.71□□□□□ -1.02
SCLT1-207ENST00000506233 PDIA4P13667 645 aaKnown RBP8.71□□□□□ -1.02
SCLT1-207ENST00000506233 NBPF8Q3BBV2 869 aa8.71□□□□□ -1.02
SCLT1-207ENST00000506233 DIP2BQ9P265 1576 aa8.7□□□□□ -1.02
SCLT1-207ENST00000506233 ZBTB7CA1YPR0 619 aa8.7□□□□□ -1.02
SCLT1-207ENST00000506233 FAM50AQ14320 339 aaKnown RBP8.7□□□□□ -1.02
SCLT1-207ENST00000506233 TET3O43151 1660 aa8.7□□□□□ -1.02
SCLT1-207ENST00000506233 ITGAEP38570 1179 aa8.69□□□□□ -1.02
SCLT1-207ENST00000506233 PLEKHH2Q8IVE3 1493 aa8.69□□□□□ -1.02
SCLT1-207ENST00000506233 SETD1AO15047 1707 aaKnown RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms