RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 DISP3Q9P2K9 1392 aa33.31■■■□□ 2.92
SQSTM1-210ENST00000506042 WASHC2CQ9Y4E1 1318 aa33.3■■■□□ 2.92
SQSTM1-210ENST00000506042 ARHGEF5Q12774 1597 aa33.3■■■□□ 2.92
SQSTM1-210ENST00000506042 TCOF1Q13428 1488 aaKnown RBP33.3■■■□□ 2.92
SQSTM1-210ENST00000506042 TNRQ92752 1358 aa33.27■■■□□ 2.92
SQSTM1-210ENST00000506042 VPS8Q8N3P4 1428 aa33.27■■■□□ 2.92
SQSTM1-210ENST00000506042 PZPP20742 1482 aa33.25■■■□□ 2.91
SQSTM1-210ENST00000506042 DNMT1P26358 1616 aaKnown RBP33.23■■■□□ 2.91
SQSTM1-210ENST00000506042 ZNF335Q9H4Z2 1342 aaPredicted RBP33.22■■■□□ 2.91
SQSTM1-210ENST00000506042 LRRC9Q6ZRR7 1453 aa33.21■■■□□ 2.91
SQSTM1-210ENST00000506042 POLR1AO95602 1720 aaPredicted RBP33.19■■■□□ 2.9
SQSTM1-210ENST00000506042 UBAP1LF5GYI3 381 aa33.19■■■□□ 2.9
SQSTM1-210ENST00000506042 THEMISQ8N1K5 641 aaPredicted RBP33.18■■■□□ 2.9
SQSTM1-210ENST00000506042 NLRP1Q9C000 1473 aa33.18■■■□□ 2.9
SQSTM1-210ENST00000506042 MAP3K1Q13233 1512 aa33.17■■■□□ 2.9
SQSTM1-210ENST00000506042 ZC3H13Q5T200 1668 aaKnown RBP33.15■■■□□ 2.9
SQSTM1-210ENST00000506042 SPATA31D1Q6ZQQ2 1576 aa33.15■■■□□ 2.9
SQSTM1-210ENST00000506042 ANKLE2Q86XL3 938 aa33.14■■■□□ 2.9
SQSTM1-210ENST00000506042 MAST1Q9Y2H9 1570 aa33.13■■■□□ 2.89
SQSTM1-210ENST00000506042 APLP2Q06481 763 aa33.13■■■□□ 2.89
SQSTM1-210ENST00000506042 MIA2Q96PC5 1412 aa33.12■■■□□ 2.89
SQSTM1-210ENST00000506042 EIF2AK4Q9P2K8 1649 aaKnown RBP33.12■■■□□ 2.89
SQSTM1-210ENST00000506042 CPS1P31327 1500 aa33.11■■■□□ 2.89
SQSTM1-210ENST00000506042 FBXO31Q5XUX0 539 aaPredicted RBP33.1■■■□□ 2.89
SQSTM1-210ENST00000506042 UGGT1Q9NYU2 1555 aa33.09■■■□□ 2.89
SQSTM1-210ENST00000506042 RNF17Q9BXT8 1623 aaKnown RBP33.08■■■□□ 2.89
SQSTM1-210ENST00000506042 MYOM3Q5VTT5 1437 aa33.08■■■□□ 2.89
SQSTM1-210ENST00000506042 TOM1O60784 492 aa33.03■■■□□ 2.88
SQSTM1-210ENST00000506042 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.01■■■□□ 2.882e-10■■■■■ 78
SQSTM1-210ENST00000506042 DEPDC5O75140 1603 aa33.01■■■□□ 2.87
SQSTM1-210ENST00000506042 DUOX2Q9NRD8 1548 aa33■■■□□ 2.87
SQSTM1-210ENST00000506042 SHANK2Q9UPX8 1470 aa32.99■■■□□ 2.87
SQSTM1-210ENST00000506042 ABCC3O15438 1527 aa32.99■■■□□ 2.87
SQSTM1-210ENST00000506042 NEURL4Q96JN8 1562 aa32.99■■■□□ 2.87
SQSTM1-210ENST00000506042 SCAF1Q9H7N4 1312 aaKnown RBP32.98■■■□□ 2.87
SQSTM1-210ENST00000506042 NPHP4O75161 1426 aaPredicted RBP32.96■■■□□ 2.87
SQSTM1-210ENST00000506042 LOC105371045A0A1W2PR82 267 aa32.96■■■□□ 2.87
SQSTM1-210ENST00000506042 SOCS7O14512 581 aa32.96■■■□□ 2.87
SQSTM1-210ENST00000506042 MED14O60244 1454 aa32.94■■■□□ 2.86
SQSTM1-210ENST00000506042 KANK4Q5T7N3 995 aaPredicted RBP32.91■■■□□ 2.86
SQSTM1-210ENST00000506042 ERVK-7P63135 1459 aa32.91■■■□□ 2.86
SQSTM1-210ENST00000506042 IQGAP1P46940 1657 aa32.91■■■□□ 2.86
SQSTM1-210ENST00000506042 KANK1Q14678 1352 aa32.89■■■□□ 2.86
SQSTM1-210ENST00000506042 ERBINQ96RT1 1412 aa32.88■■■□□ 2.85
SQSTM1-210ENST00000506042 ILDR2Q71H61 639 aa32.88■■■□□ 2.85
SQSTM1-210ENST00000506042 KIF15Q9NS87 1388 aa32.87■■■□□ 2.85
SQSTM1-210ENST00000506042 CEP152O94986 1710 aa32.86■■■□□ 2.85
SQSTM1-210ENST00000506042 PIP4K2BP78356 416 aa32.86■■■□□ 2.85
SQSTM1-210ENST00000506042 CROCC2H7BZ55 1655 aa32.85■■■□□ 2.85
SQSTM1-210ENST00000506042 PTPN23Q9H3S7 1636 aa32.84■■■□□ 2.85
SQSTM1-210ENST00000506042 VWDEQ8N2E2 1590 aa32.83■■■□□ 2.85
SQSTM1-210ENST00000506042 PRDM15P57071 1507 aaPredicted RBP32.82■■■□□ 2.84
SQSTM1-210ENST00000506042 MROH1Q8NDA8 1641 aa32.81■■■□□ 2.84
SQSTM1-210ENST00000506042 ARHGAP31Q2M1Z3 1444 aa32.8■■■□□ 2.84
SQSTM1-210ENST00000506042 EID1Q9Y6B2 187 aa32.8■■■□□ 2.84
SQSTM1-210ENST00000506042 SYNMO15061 1565 aa32.79■■■□□ 2.84
SQSTM1-210ENST00000506042 RRP7BPQ9NSQ0 103 aa32.77■■■□□ 2.84
SQSTM1-210ENST00000506042 STAG3Q9UJ98 1225 aa32.77■■■□□ 2.84
SQSTM1-210ENST00000506042 UBR1Q8IWV7 1749 aa32.77■■■□□ 2.84
SQSTM1-210ENST00000506042 SCAF11Q99590 1463 aaKnown RBP32.76■■■□□ 2.84
SQSTM1-210ENST00000506042 ANKRD30AQ9BXX3 1397 aa32.76■■■□□ 2.83
SQSTM1-210ENST00000506042 CFAP65Q6ZU64 1925 aaKnown RBP32.75■■■□□ 2.83
SQSTM1-210ENST00000506042 DAPK1P53355 1430 aa32.75■■■□□ 2.83
SQSTM1-210ENST00000506042 ABCC5O15440 1437 aa32.74■■■□□ 2.83
SQSTM1-210ENST00000506042 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.73■■■□□ 2.83
SQSTM1-210ENST00000506042 FGD6Q6ZV73 1430 aa32.72■■■□□ 2.83
SQSTM1-210ENST00000506042 HSPA1LP34931 641 aa32.72■■■□□ 2.83
SQSTM1-210ENST00000506042 TXNDC2Q86VQ3 553 aa32.69■■■□□ 2.82
SQSTM1-210ENST00000506042 SLIT1O75093 1534 aa32.68■■■□□ 2.82
SQSTM1-210ENST00000506042 KDM5AP29375 1690 aaKnown RBP32.64■■■□□ 2.82
SQSTM1-210ENST00000506042 LRRC7Q96NW7 1537 aa32.64■■■□□ 2.82
SQSTM1-210ENST00000506042 ARHGAP23Q9P227 1491 aa32.64■■■□□ 2.82
SQSTM1-210ENST00000506042 PHF23Q9BUL5 403 aaPredicted RBP32.62■■■□□ 2.81
SQSTM1-210ENST00000506042 MED1Q15648 1581 aaPredicted RBP32.62■■■□□ 2.81
SQSTM1-210ENST00000506042 LMTK2Q8IWU2 1503 aa32.6■■■□□ 2.81
SQSTM1-210ENST00000506042 CHIC2Q9UKJ5 165 aa32.59■■■□□ 2.81
SQSTM1-210ENST00000506042 PIK3C2BO00750 1634 aa32.59■■■□□ 2.81
SQSTM1-210ENST00000506042 EFCAB6Q5THR3 1501 aa32.58■■■□□ 2.81
SQSTM1-210ENST00000506042 TMEM2Q9UHN6 1383 aa32.57■■■□□ 2.8
SQSTM1-210ENST00000506042 STRCP1A6NGW2 1772 aa32.55■■■□□ 2.8
SQSTM1-210ENST00000506042 LTKP29376 864 aa32.53■■■□□ 2.8
SQSTM1-210ENST00000506042 FAM50AQ14320 339 aaKnown RBP32.52■■■□□ 2.8
SQSTM1-210ENST00000506042 SLC52A1Q9NWF4 448 aa32.52■■■□□ 2.8
SQSTM1-210ENST00000506042 ADGRL2O95490 1459 aa32.51■■■□□ 2.79
SQSTM1-210ENST00000506042 HDGFP51858 240 aaKnown RBP32.5■■■□□ 2.79
SQSTM1-210ENST00000506042 RPRD2Q5VT52 1461 aaKnown RBP32.48■■■□□ 2.79
SQSTM1-210ENST00000506042 IDI1Q13907 227 aa32.46■■■□□ 2.79
SQSTM1-210ENST00000506042 BCANQ96GW7 911 aa32.46■■■□□ 2.79
SQSTM1-210ENST00000506042 ADGRB3O60242 1522 aa32.45■■■□□ 2.78
SQSTM1-210ENST00000506042 ALKQ9UM73 1620 aa32.44■■■□□ 2.78
SQSTM1-210ENST00000506042 ANKRD50Q9ULJ7 1429 aa32.44■■■□□ 2.78
SQSTM1-210ENST00000506042 NOS1P29475 1434 aa32.42■■■□□ 2.78
SQSTM1-210ENST00000506042 KCNA6P17658 529 aa32.4■■■□□ 2.78
SQSTM1-210ENST00000506042 SENP3Q9H4L4 574 aaPredicted RBP32.4■■■□□ 2.78
SQSTM1-210ENST00000506042 PPP1R15AO75807 674 aaPredicted RBP32.36■■■□□ 2.77
SQSTM1-210ENST00000506042 PROSER2Q86WR7 435 aaPredicted RBP32.36■■■□□ 2.77
SQSTM1-210ENST00000506042 TET3O43151 1660 aa32.36■■■□□ 2.77
SQSTM1-210ENST00000506042 NKTRP30414 1462 aaKnown RBP32.35■■■□□ 2.77
SQSTM1-210ENST00000506042 TMEM94Q12767 1356 aa32.33■■■□□ 2.77
SQSTM1-210ENST00000506042 FAM135BQ49AJ0 1406 aa32.33■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms