RNA–Protein interactions for RNA: ENST00000504355.5

PDLIM3-205, Transcript of PDZ and LIM domain 3, humanhuman

TSL 3

Gene PDLIM3, Length 510 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-205ENST00000504355 WASHC2CQ9Y4E1 1318 aa25.44■■□□□ 1.66
PDLIM3-205ENST00000504355 LTBP4Q8N2S1 1624 aa25.43■■□□□ 1.66
PDLIM3-205ENST00000504355 CAMSAP1Q5T5Y3 1602 aa25.42■■□□□ 1.66
PDLIM3-205ENST00000504355 PTPRKQ15262 1439 aa25.39■■□□□ 1.66
PDLIM3-205ENST00000504355 ABCC5O15440 1437 aa25.38■■□□□ 1.65
PDLIM3-205ENST00000504355 KDM5DQ9BY66 1539 aa25.38■■□□□ 1.65
PDLIM3-205ENST00000504355 TCOF1Q13428 1488 aaKnown RBP25.38■■□□□ 1.65
PDLIM3-205ENST00000504355 IQSEC2Q5JU85 1478 aa25.38■■□□□ 1.65
PDLIM3-205ENST00000504355 RRP7BPQ9NSQ0 103 aa25.37■■□□□ 1.65
PDLIM3-205ENST00000504355 DAPK1P53355 1430 aa25.37■■□□□ 1.65
PDLIM3-205ENST00000504355 FAM50AQ14320 339 aaKnown RBP25.36■■□□□ 1.65
PDLIM3-205ENST00000504355 FAM135AQ9P2D6 1515 aa25.36■■□□□ 1.65
PDLIM3-205ENST00000504355 SHANK2Q9UPX8 1470 aa25.35■■□□□ 1.65
PDLIM3-205ENST00000504355 KIF15Q9NS87 1388 aa25.34■■□□□ 1.65
PDLIM3-205ENST00000504355 DUOX2Q9NRD8 1548 aa25.34■■□□□ 1.65
PDLIM3-205ENST00000504355 ILDR2Q71H61 639 aa25.34■■□□□ 1.65
PDLIM3-205ENST00000504355 CHIC2Q9UKJ5 165 aa25.34■■□□□ 1.65
PDLIM3-205ENST00000504355 DNMT1P26358 1616 aaKnown RBP25.34■■□□□ 1.65
PDLIM3-205ENST00000504355 MYO3AQ8NEV4 1616 aa25.34■■□□□ 1.65
PDLIM3-205ENST00000504355 CROCC2H7BZ55 1655 aa25.33■■□□□ 1.65
PDLIM3-205ENST00000504355 NCKAP5LQ9HCH0 1330 aa25.33■■□□□ 1.64
PDLIM3-205ENST00000504355 ZNF142P52746 1687 aaPredicted RBP25.32■■□□□ 1.64
PDLIM3-205ENST00000504355 FBXO31Q5XUX0 539 aaPredicted RBP25.32■■□□□ 1.64
PDLIM3-205ENST00000504355 EIF2AK4Q9P2K8 1649 aaKnown RBP25.32■■□□□ 1.64
PDLIM3-205ENST00000504355 SPATA31D1Q6ZQQ2 1576 aa25.31■■□□□ 1.64
PDLIM3-205ENST00000504355 RNF17Q9BXT8 1623 aaKnown RBP25.3■■□□□ 1.64
PDLIM3-205ENST00000504355 CEP170BQ9Y4F5 1589 aaPredicted RBP25.29■■□□□ 1.64
PDLIM3-205ENST00000504355 ANKRD30AQ9BXX3 1397 aa25.29■■□□□ 1.64
PDLIM3-205ENST00000504355 PZPP20742 1482 aa25.28■■□□□ 1.64
PDLIM3-205ENST00000504355 TNRQ92752 1358 aa25.28■■□□□ 1.64
PDLIM3-205ENST00000504355 PLA2R1Q13018 1463 aa25.28■■□□□ 1.64
PDLIM3-205ENST00000504355 PKD2Q13563 968 aa25.27■■□□□ 1.64
PDLIM3-205ENST00000504355 SOCS7O14512 581 aa25.26■■□□□ 1.63
PDLIM3-205ENST00000504355 PPARGC1BQ86YN6 1023 aaKnown RBP25.26■■□□□ 1.63
PDLIM3-205ENST00000504355 ZNF335Q9H4Z2 1342 aaPredicted RBP25.26■■□□□ 1.63
PDLIM3-205ENST00000504355 ERBINQ96RT1 1412 aa25.26■■□□□ 1.63
PDLIM3-205ENST00000504355 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.24■■□□□ 1.63
PDLIM3-205ENST00000504355 ZC3H13Q5T200 1668 aaKnown RBP25.23■■□□□ 1.63
PDLIM3-205ENST00000504355 ABCC3O15438 1527 aa25.23■■□□□ 1.63
PDLIM3-205ENST00000504355 A2ML1A8K2U0 1454 aa25.22■■□□□ 1.63
PDLIM3-205ENST00000504355 UBAP1LF5GYI3 381 aa25.2■■□□□ 1.62
PDLIM3-205ENST00000504355 KANK1Q14678 1352 aa25.19■■□□□ 1.62
PDLIM3-205ENST00000504355 MROH1Q8NDA8 1641 aa25.19■■□□□ 1.62
PDLIM3-205ENST00000504355 CEP152O94986 1710 aa25.16■■□□□ 1.62
PDLIM3-205ENST00000504355 PRDM15P57071 1507 aaPredicted RBP25.15■■□□□ 1.62
PDLIM3-205ENST00000504355 ADGRL2O95490 1459 aa25.15■■□□□ 1.62
PDLIM3-205ENST00000504355 NLRP1Q9C000 1473 aa25.15■■□□□ 1.62
PDLIM3-205ENST00000504355 THEMISQ8N1K5 641 aaPredicted RBP25.13■■□□□ 1.61
PDLIM3-205ENST00000504355 POLR1AO95602 1720 aaPredicted RBP25.12■■□□□ 1.61
PDLIM3-205ENST00000504355 ERVK-7P63135 1459 aa25.11■■□□□ 1.61
PDLIM3-205ENST00000504355 ITGAEP38570 1179 aa25.11■■□□□ 1.61
PDLIM3-205ENST00000504355 UGGT1Q9NYU2 1555 aa25.1■■□□□ 1.61
PDLIM3-205ENST00000504355 DEPDC5O75140 1603 aa25.09■■□□□ 1.61
PDLIM3-205ENST00000504355 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.08■■□□□ 1.61
PDLIM3-205ENST00000504355 ANKLE2Q86XL3 938 aa25.08■■□□□ 1.61
PDLIM3-205ENST00000504355 ANKRD50Q9ULJ7 1429 aa25.08■■□□□ 1.61
PDLIM3-205ENST00000504355 ARHGAP31Q2M1Z3 1444 aa25.07■■□□□ 1.6
PDLIM3-205ENST00000504355 NEURL4Q96JN8 1562 aa25.03■■□□□ 1.6
PDLIM3-205ENST00000504355 CFAP65Q6ZU64 1925 aaKnown RBP25.02■■□□□ 1.6
PDLIM3-205ENST00000504355 CPS1P31327 1500 aa25.02■■□□□ 1.6
PDLIM3-205ENST00000504355 SCAF1Q9H7N4 1312 aaKnown RBP25.01■■□□□ 1.59
PDLIM3-205ENST00000504355 ROCK1Q13464 1354 aa25■■□□□ 1.59
PDLIM3-205ENST00000504355 LMTK2Q8IWU2 1503 aa25■■□□□ 1.59
PDLIM3-205ENST00000504355 VWDEQ8N2E2 1590 aa24.99■■□□□ 1.59
PDLIM3-205ENST00000504355 STAG3Q9UJ98 1225 aa24.99■■□□□ 1.59
PDLIM3-205ENST00000504355 TOM1O60784 492 aa24.98■■□□□ 1.59
PDLIM3-205ENST00000504355 PIP4K2BP78356 416 aa24.97■■□□□ 1.59
PDLIM3-205ENST00000504355 NPHP4O75161 1426 aaPredicted RBP24.94■■□□□ 1.58
PDLIM3-205ENST00000504355 EFCAB6Q5THR3 1501 aa24.93■■□□□ 1.58
PDLIM3-205ENST00000504355 HSPA1LP34931 641 aa24.93■■□□□ 1.58
PDLIM3-205ENST00000504355 UBR1Q8IWV7 1749 aa24.92■■□□□ 1.58
PDLIM3-205ENST00000504355 IDI1Q13907 227 aa24.9■■□□□ 1.58
PDLIM3-205ENST00000504355 EID1Q9Y6B2 187 aa24.9■■□□□ 1.58
PDLIM3-205ENST00000504355 MED14O60244 1454 aa24.89■■□□□ 1.58
PDLIM3-205ENST00000504355 RRBP1Q9P2E9 1410 aaKnown RBP24.89■■□□□ 1.58
PDLIM3-205ENST00000504355 TXNDC2Q86VQ3 553 aa24.89■■□□□ 1.58
PDLIM3-205ENST00000504355 IQGAP1P46940 1657 aa24.88■■□□□ 1.57
PDLIM3-205ENST00000504355 PIK3C2BO00750 1634 aa24.88■■□□□ 1.57
PDLIM3-205ENST00000504355 UNC13BO14795 1591 aa24.88■■□□□ 1.57
PDLIM3-205ENST00000504355 RPRD2Q5VT52 1461 aaKnown RBP24.87■■□□□ 1.57
PDLIM3-205ENST00000504355 NOS1P29475 1434 aa24.86■■□□□ 1.57
PDLIM3-205ENST00000504355 MED1Q15648 1581 aaPredicted RBP24.86■■□□□ 1.57
PDLIM3-205ENST00000504355 SLC52A1Q9NWF4 448 aa24.86■■□□□ 1.57
PDLIM3-205ENST00000504355 TET3O43151 1660 aa24.85■■□□□ 1.57
PDLIM3-205ENST00000504355 SCAF11Q99590 1463 aaKnown RBP24.85■■□□□ 1.57
PDLIM3-205ENST00000504355 NUP155O75694 1391 aa24.85■■□□□ 1.57
PDLIM3-205ENST00000504355 SYNMO15061 1565 aa24.84■■□□□ 1.57
PDLIM3-205ENST00000504355 LTKP29376 864 aa24.84■■□□□ 1.57
PDLIM3-205ENST00000504355 SLIT1O75093 1534 aa24.83■■□□□ 1.57
PDLIM3-205ENST00000504355 ARHGAP23Q9P227 1491 aa24.82■■□□□ 1.56
PDLIM3-205ENST00000504355 TMEM2Q9UHN6 1383 aa24.81■■□□□ 1.56
PDLIM3-205ENST00000504355 GCC2Q8IWJ2 1684 aa24.81■■□□□ 1.56
PDLIM3-205ENST00000504355 STRCP1A6NGW2 1772 aa24.8■■□□□ 1.56
PDLIM3-205ENST00000504355 IQGAP3Q86VI3 1631 aa24.79■■□□□ 1.56
PDLIM3-205ENST00000504355 ALKQ9UM73 1620 aa24.78■■□□□ 1.56
PDLIM3-205ENST00000504355 KDM5AP29375 1690 aaKnown RBP24.78■■□□□ 1.56
PDLIM3-205ENST00000504355 ADGRB3O60242 1522 aa24.76■■□□□ 1.55
PDLIM3-205ENST00000504355 CHGAP10645 457 aaKnown RBP24.76■■□□□ 1.55
PDLIM3-205ENST00000504355 LRRC7Q96NW7 1537 aa24.75■■□□□ 1.55
PDLIM3-205ENST00000504355 BCANQ96GW7 911 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms