RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 ARHGAP35Q9NRY4 1499 aa21.07■□□□□ 0.96
LSM6-204ENST00000504181 EEA1Q15075 1411 aa21.07■□□□□ 0.96
LSM6-204ENST00000504181 ZNF777Q9ULD5 760 aaPredicted RBP21.07■□□□□ 0.96
LSM6-204ENST00000504181 NPHP4O75161 1426 aaPredicted RBP21.06■□□□□ 0.96
LSM6-204ENST00000504181 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.06■□□□□ 0.96
LSM6-204ENST00000504181 ANKLE2Q86XL3 938 aa21.04■□□□□ 0.96
LSM6-204ENST00000504181 TNRQ92752 1358 aa21.04■□□□□ 0.96
LSM6-204ENST00000504181 MED14O60244 1454 aa21.04■□□□□ 0.96
LSM6-204ENST00000504181 HNRNPMP52272 730 aaKnown RBP eCLIP21.02■□□□□ 0.96
LSM6-204ENST00000504181 UGGT1Q9NYU2 1555 aa21.02■□□□□ 0.95
LSM6-204ENST00000504181 ZC3H13Q5T200 1668 aaKnown RBP21.01■□□□□ 0.95
LSM6-204ENST00000504181 FBXO31Q5XUX0 539 aaPredicted RBP21■□□□□ 0.95
LSM6-204ENST00000504181 CCDC18Q5T9S5 1454 aa20.98■□□□□ 0.95
LSM6-204ENST00000504181 PZPP20742 1482 aa20.97■□□□□ 0.95
LSM6-204ENST00000504181 FAM135AQ9P2D6 1515 aa20.96■□□□□ 0.95
LSM6-204ENST00000504181 EHMT2Q96KQ7 1210 aa20.96■□□□□ 0.95
LSM6-204ENST00000504181 KDM5DQ9BY66 1539 aa20.94■□□□□ 0.94
LSM6-204ENST00000504181 THEMISQ8N1K5 641 aaPredicted RBP20.94■□□□□ 0.94
LSM6-204ENST00000504181 GPATCH8Q9UKJ3 1502 aaKnown RBP20.94■□□□□ 0.94
LSM6-204ENST00000504181 NLRP1Q9C000 1473 aa20.93■□□□□ 0.94
LSM6-204ENST00000504181 ROBO1Q9Y6N7 1651 aa20.93■□□□□ 0.94
LSM6-204ENST00000504181 PLEKHH2Q8IVE3 1493 aa20.92■□□□□ 0.94
LSM6-204ENST00000504181 CFAP65Q6ZU64 1925 aaKnown RBP20.92■□□□□ 0.94
LSM6-204ENST00000504181 KIAA1107Q9UPP5 1409 aa20.9■□□□□ 0.94
LSM6-204ENST00000504181 UBTFP17480 764 aaKnown RBP20.89■□□□□ 0.93
LSM6-204ENST00000504181 MIA2Q96PC5 1412 aa20.87■□□□□ 0.93
LSM6-204ENST00000504181 UBR1Q8IWV7 1749 aa20.86■□□□□ 0.93
LSM6-204ENST00000504181 CASKIN1Q8WXD9 1431 aa20.86■□□□□ 0.93
LSM6-204ENST00000504181 PHLPP1O60346 1717 aa20.85■□□□□ 0.93
LSM6-204ENST00000504181 FAM135BQ49AJ0 1406 aa20.84■□□□□ 0.93
LSM6-204ENST00000504181 UPF1Q92900 1129 aaKnown RBP eCLIP20.83■□□□□ 0.93
LSM6-204ENST00000504181 CFDP1Q9UEE9 299 aaPredicted RBP20.82■□□□□ 0.92
LSM6-204ENST00000504181 KIF3BO15066 747 aa20.81■□□□□ 0.92
LSM6-204ENST00000504181 DHX29Q7Z478 1369 aaKnown RBP20.81■□□□□ 0.92
LSM6-204ENST00000504181 WASHC2CQ9Y4E1 1318 aa20.8■□□□□ 0.92
LSM6-204ENST00000504181 SCAF11Q99590 1463 aaKnown RBP20.76■□□□□ 0.91
LSM6-204ENST00000504181 FYCO1Q9BQS8 1478 aa20.76■□□□□ 0.91
LSM6-204ENST00000504181 CCNB3Q8WWL7 1395 aa20.76■□□□□ 0.91
LSM6-204ENST00000504181 RTEL1-TNFRSF6BF6WH68 1400 aa20.76■□□□□ 0.91
LSM6-204ENST00000504181 SRCAPQ6ZRS2 3230 aa20.76■□□□□ 0.91
LSM6-204ENST00000504181 CEP152O94986 1710 aa20.75■□□□□ 0.91
LSM6-204ENST00000504181 TIAM1Q13009 1591 aa20.74■□□□□ 0.91
LSM6-204ENST00000504181 MBD5Q9P267 1494 aa20.74■□□□□ 0.91
LSM6-204ENST00000504181 TRIM52Q96A61 297 aa20.73■□□□□ 0.91
LSM6-204ENST00000504181 ZNF644Q9H582 1327 aaPredicted RBP20.73■□□□□ 0.91
LSM6-204ENST00000504181 MAP3K1Q13233 1512 aa20.71■□□□□ 0.91
LSM6-204ENST00000504181 ERVK-7P63135 1459 aa20.69■□□□□ 0.9
LSM6-204ENST00000504181 LRRC9Q6ZRR7 1453 aa20.69■□□□□ 0.9
LSM6-204ENST00000504181 COL16A1Q07092 1604 aaPredicted RBP20.68■□□□□ 0.9
LSM6-204ENST00000504181 TMEM94Q12767 1356 aa20.68■□□□□ 0.9
LSM6-204ENST00000504181 NCOA2Q15596 1464 aa20.68■□□□□ 0.9
LSM6-204ENST00000504181 ABCC3O15438 1527 aa20.68■□□□□ 0.9
LSM6-204ENST00000504181 SLIT1O75093 1534 aa20.68■□□□□ 0.9
LSM6-204ENST00000504181 LRP6O75581 1613 aa20.67■□□□□ 0.9
LSM6-204ENST00000504181 JCADQ9P266 1359 aa20.67■□□□□ 0.9
LSM6-204ENST00000504181 LTKP29376 864 aa20.66■□□□□ 0.9
LSM6-204ENST00000504181 ARHGAP23Q9P227 1491 aa20.66■□□□□ 0.9
LSM6-204ENST00000504181 FOXD1Q16676 465 aa20.65■□□□□ 0.9
LSM6-204ENST00000504181 CCDC141Q6ZP82 1450 aa20.64■□□□□ 0.89
LSM6-204ENST00000504181 TXNDC2Q86VQ3 553 aa20.63■□□□□ 0.89
LSM6-204ENST00000504181 SHPRHQ149N8 1683 aa20.62■□□□□ 0.89
LSM6-204ENST00000504181 RBM33Q96EV2 1170 aaKnown RBP20.62■□□□□ 0.89
LSM6-204ENST00000504181 PIK3C2BO00750 1634 aa20.62■□□□□ 0.89
LSM6-204ENST00000504181 MEX3CQ5U5Q3 659 aaKnown RBP20.61■□□□□ 0.89
LSM6-204ENST00000504181 ZNF772Q68DY9 489 aaPredicted RBP20.61■□□□□ 0.89
LSM6-204ENST00000504181 MTUS2Q5JR59 1369 aa20.59■□□□□ 0.89
LSM6-204ENST00000504181 MROH1Q8NDA8 1641 aa20.59■□□□□ 0.89
LSM6-204ENST00000504181 EIF2AK4Q9P2K8 1649 aaKnown RBP20.58■□□□□ 0.89
LSM6-204ENST00000504181 PRDM15P57071 1507 aaPredicted RBP20.58■□□□□ 0.88
LSM6-204ENST00000504181 NWD1Q149M9 1564 aa20.57■□□□□ 0.88
LSM6-204ENST00000504181 PROSER2Q86WR7 435 aaPredicted RBP20.57■□□□□ 0.88
LSM6-204ENST00000504181 CAMSAP2Q08AD1 1489 aa20.56■□□□□ 0.88
LSM6-204ENST00000504181 EID1Q9Y6B2 187 aa20.56■□□□□ 0.88
LSM6-204ENST00000504181 KDM5AP29375 1690 aaKnown RBP20.56■□□□□ 0.88
LSM6-204ENST00000504181 RXRBP28702 533 aa20.55■□□□□ 0.88
LSM6-204ENST00000504181 CDK12Q9NYV4 1490 aaPredicted RBP20.55■□□□□ 0.88
LSM6-204ENST00000504181 EHBP1L1Q8N3D4 1523 aa20.54■□□□□ 0.88
LSM6-204ENST00000504181 MSH6P52701 1360 aa20.54■□□□□ 0.88
LSM6-204ENST00000504181 SPATA31A6Q5VVP1 1343 aa20.53■□□□□ 0.88
LSM6-204ENST00000504181 KCNA6P17658 529 aa20.53■□□□□ 0.88
LSM6-204ENST00000504181 NKTRP30414 1462 aaKnown RBP20.53■□□□□ 0.88
LSM6-204ENST00000504181 CHD2O14647 1828 aaKnown RBP20.53■□□□□ 0.88
LSM6-204ENST00000504181 TET3O43151 1660 aa20.52■□□□□ 0.88
LSM6-204ENST00000504181 SLAIN2Q9P270 581 aa20.52■□□□□ 0.88
LSM6-204ENST00000504181 ARHGEF5Q12774 1597 aa20.51■□□□□ 0.87
LSM6-204ENST00000504181 FGD6Q6ZV73 1430 aa20.51■□□□□ 0.87
LSM6-204ENST00000504181 TMEM2Q9UHN6 1383 aa20.48■□□□□ 0.87
LSM6-204ENST00000504181 SLC26A8Q96RN1 970 aa20.48■□□□□ 0.87
LSM6-204ENST00000504181 AHDC1Q5TGY3 1603 aaPredicted RBP20.48■□□□□ 0.87
LSM6-204ENST00000504181 EFCAB6Q5THR3 1501 aa20.46■□□□□ 0.87
LSM6-204ENST00000504181 RGS12O14924 1447 aa20.45■□□□□ 0.86
LSM6-204ENST00000504181 CEP162Q5TB80 1403 aa20.44■□□□□ 0.86
LSM6-204ENST00000504181 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.44■□□□□ 0.86
LSM6-204ENST00000504181 MAST1Q9Y2H9 1570 aa20.44■□□□□ 0.86
LSM6-204ENST00000504181 SETBP1Q9Y6X0 1596 aa20.44■□□□□ 0.86
LSM6-204ENST00000504181 MYO5BQ9ULV0 1848 aa20.43■□□□□ 0.86
LSM6-204ENST00000504181 DIP2AQ14689 1571 aa20.43■□□□□ 0.86
LSM6-204ENST00000504181 RSPH4AQ5TD94 716 aa20.43■□□□□ 0.86
LSM6-204ENST00000504181 STAG3Q9UJ98 1225 aa20.42■□□□□ 0.86
LSM6-204ENST00000504181 NUTM2BA6NNL0 878 aaPredicted RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms