RNA–Protein interactions for RNA: ENST00000503982.1

LSM6-203, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 820 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-203ENST00000503982 PTPN23Q9H3S7 1636 aa34.41■■■■□ 3.1
LSM6-203ENST00000503982 ZNF142P52746 1687 aaPredicted RBP34.4■■■■□ 3.1
LSM6-203ENST00000503982 NCOA1Q15788 1441 aa34.38■■■■□ 3.09
LSM6-203ENST00000503982 CEP170BQ9Y4F5 1589 aaPredicted RBP34.38■■■■□ 3.09
LSM6-203ENST00000503982 PTPRTO14522 1441 aa34.37■■■■□ 3.09
LSM6-203ENST00000503982 FAM135AQ9P2D6 1515 aa34.35■■■■□ 3.09
LSM6-203ENST00000503982 CROCC2H7BZ55 1655 aa34.33■■■■□ 3.09
LSM6-203ENST00000503982 NCKAP5LQ9HCH0 1330 aa34.31■■■■□ 3.08
LSM6-203ENST00000503982 EIF2AK4Q9P2K8 1649 aaKnown RBP34.31■■■■□ 3.08
LSM6-203ENST00000503982 FBXO31Q5XUX0 539 aaPredicted RBP34.3■■■■□ 3.08
LSM6-203ENST00000503982 RNF17Q9BXT8 1623 aaKnown RBP34.3■■■■□ 3.08
LSM6-203ENST00000503982 PZPP20742 1482 aa34.29■■■■□ 3.08
LSM6-203ENST00000503982 TNRQ92752 1358 aa34.29■■■■□ 3.08
LSM6-203ENST00000503982 FGD6Q6ZV73 1430 aa34.29■■■■□ 3.08
LSM6-203ENST00000503982 DUOX2Q9NRD8 1548 aa34.27■■■■□ 3.08
LSM6-203ENST00000503982 A2ML1A8K2U0 1454 aa34.26■■■■□ 3.07
LSM6-203ENST00000503982 ZC3H13Q5T200 1668 aaKnown RBP34.25■■■■□ 3.07
LSM6-203ENST00000503982 ABCC5O15440 1437 aa34.24■■■■□ 3.07
LSM6-203ENST00000503982 DNMT1P26358 1616 aaKnown RBP34.24■■■■□ 3.07
LSM6-203ENST00000503982 RRP7BPQ9NSQ0 103 aa34.24■■■■□ 3.07
LSM6-203ENST00000503982 KIF15Q9NS87 1388 aa34.23■■■■□ 3.07
LSM6-203ENST00000503982 SHANK2Q9UPX8 1470 aa34.23■■■■□ 3.07
LSM6-203ENST00000503982 DAPK1P53355 1430 aa34.22■■■■□ 3.07
LSM6-203ENST00000503982 PLA2R1Q13018 1463 aa34.22■■■■□ 3.07
LSM6-203ENST00000503982 CEP152O94986 1710 aa34.22■■■■□ 3.07
LSM6-203ENST00000503982 PKD2Q13563 968 aa34.22■■■■□ 3.07
LSM6-203ENST00000503982 CFAP65Q6ZU64 1925 aaKnown RBP34.21■■■■□ 3.07
LSM6-203ENST00000503982 TCOF1Q13428 1488 aaKnown RBP34.2■■■■□ 3.06
LSM6-203ENST00000503982 ABCC3O15438 1527 aa34.2■■■■□ 3.06
LSM6-203ENST00000503982 CHIC2Q9UKJ5 165 aa34.19■■■■□ 3.06
LSM6-203ENST00000503982 FAM50AQ14320 339 aaKnown RBP34.16■■■■□ 3.06
LSM6-203ENST00000503982 MROH1Q8NDA8 1641 aa34.15■■■■□ 3.06
LSM6-203ENST00000503982 POLR1AO95602 1720 aaPredicted RBP34.13■■■■□ 3.05
LSM6-203ENST00000503982 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.13■■■■□ 3.053e-6■□□□□ 8.5
LSM6-203ENST00000503982 ERBINQ96RT1 1412 aa34.13■■■■□ 3.05
LSM6-203ENST00000503982 ANKRD30AQ9BXX3 1397 aa34.11■■■■□ 3.05
LSM6-203ENST00000503982 NLRP1Q9C000 1473 aa34.1■■■■□ 3.05
LSM6-203ENST00000503982 LTBP4Q8N2S1 1624 aa34.09■■■■□ 3.05
LSM6-203ENST00000503982 UGGT1Q9NYU2 1555 aa34.08■■■■□ 3.05
LSM6-203ENST00000503982 THEMISQ8N1K5 641 aaPredicted RBP34.07■■■■□ 3.04
LSM6-203ENST00000503982 ZNF335Q9H4Z2 1342 aaPredicted RBP34.06■■■■□ 3.04
LSM6-203ENST00000503982 KANK1Q14678 1352 aa34.05■■■■□ 3.04
LSM6-203ENST00000503982 ERVK-7P63135 1459 aa34.05■■■■□ 3.04
LSM6-203ENST00000503982 SPATA31D1Q6ZQQ2 1576 aa34.04■■■■□ 3.04
LSM6-203ENST00000503982 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.04■■■■□ 3.04
LSM6-203ENST00000503982 PRDM15P57071 1507 aaPredicted RBP34.04■■■■□ 3.04
LSM6-203ENST00000503982 ANKLE2Q86XL3 938 aa34.02■■■■□ 3.04
LSM6-203ENST00000503982 DEPDC5O75140 1603 aa33.99■■■■□ 3.03
LSM6-203ENST00000503982 NEURL4Q96JN8 1562 aa33.96■■■■□ 3.03
LSM6-203ENST00000503982 IQSEC2Q5JU85 1478 aa33.95■■■■□ 3.03
LSM6-203ENST00000503982 PPARGC1BQ86YN6 1023 aaKnown RBP33.93■■■■□ 3.02
LSM6-203ENST00000503982 ADGRL2O95490 1459 aa33.92■■■■□ 3.02
LSM6-203ENST00000503982 ARHGAP31Q2M1Z3 1444 aa33.89■■■■□ 3.02
LSM6-203ENST00000503982 UBR1Q8IWV7 1749 aa33.89■■■■□ 3.02
LSM6-203ENST00000503982 NPHP4O75161 1426 aaPredicted RBP33.88■■■■□ 3.01
LSM6-203ENST00000503982 IQGAP1P46940 1657 aa33.86■■■■□ 3.01
LSM6-203ENST00000503982 STAG3Q9UJ98 1225 aa33.85■■■■□ 3.01
LSM6-203ENST00000503982 UBAP1LF5GYI3 381 aa33.84■■■■□ 3.01
LSM6-203ENST00000503982 ANKRD50Q9ULJ7 1429 aa33.83■■■■□ 3.01
LSM6-203ENST00000503982 LMTK2Q8IWU2 1503 aa33.81■■■■□ 3
LSM6-203ENST00000503982 ITGAEP38570 1179 aa33.81■■■■□ 3
LSM6-203ENST00000503982 MED14O60244 1454 aa33.8■■■■□ 3
LSM6-203ENST00000503982 VWDEQ8N2E2 1590 aa33.8■■■■□ 3
LSM6-203ENST00000503982 PIK3C2BO00750 1634 aa33.79■■■■□ 3
LSM6-203ENST00000503982 CPS1P31327 1500 aa33.78■■■■□ 3
LSM6-203ENST00000503982 EFCAB6Q5THR3 1501 aa33.76■■■■□ 3
LSM6-203ENST00000503982 TXNDC2Q86VQ3 553 aa33.73■■■□□ 2.99
LSM6-203ENST00000503982 EID1Q9Y6B2 187 aa33.73■■■□□ 2.99
LSM6-203ENST00000503982 SCAF11Q99590 1463 aaKnown RBP33.73■■■□□ 2.99
LSM6-203ENST00000503982 SCAF1Q9H7N4 1312 aaKnown RBP33.71■■■□□ 2.99
LSM6-203ENST00000503982 SYNMO15061 1565 aa33.68■■■□□ 2.98
LSM6-203ENST00000503982 SLIT1O75093 1534 aa33.68■■■□□ 2.98
LSM6-203ENST00000503982 TET3O43151 1660 aa33.68■■■□□ 2.98
LSM6-203ENST00000503982 IDI1Q13907 227 aa33.67■■■□□ 2.98
LSM6-203ENST00000503982 LTKP29376 864 aa33.66■■■□□ 2.98
LSM6-203ENST00000503982 ARHGAP23Q9P227 1491 aa33.66■■■□□ 2.98
LSM6-203ENST00000503982 GCC2Q8IWJ2 1684 aa33.65■■■□□ 2.98
LSM6-203ENST00000503982 ROCK1Q13464 1354 aa33.65■■■□□ 2.98
LSM6-203ENST00000503982 UNC13BO14795 1591 aa33.64■■■□□ 2.98
LSM6-203ENST00000503982 KDM5AP29375 1690 aaKnown RBP33.64■■■□□ 2.98
LSM6-203ENST00000503982 NOS1P29475 1434 aa33.62■■■□□ 2.97
LSM6-203ENST00000503982 TOM1O60784 492 aa33.62■■■□□ 2.97
LSM6-203ENST00000503982 PIP4K2BP78356 416 aa33.62■■■□□ 2.97
LSM6-203ENST00000503982 TMEM2Q9UHN6 1383 aa33.61■■■□□ 2.97
LSM6-203ENST00000503982 STRCP1A6NGW2 1772 aa33.61■■■□□ 2.97
LSM6-203ENST00000503982 RPRD2Q5VT52 1461 aaKnown RBP33.61■■■□□ 2.97
LSM6-203ENST00000503982 ADGRB3O60242 1522 aa33.59■■■□□ 2.97
LSM6-203ENST00000503982 SLC52A1Q9NWF4 448 aa33.59■■■□□ 2.97
LSM6-203ENST00000503982 DISP3Q9P2K9 1392 aa33.57■■■□□ 2.96
LSM6-203ENST00000503982 BCANQ96GW7 911 aa33.55■■■□□ 2.96
LSM6-203ENST00000503982 MYO5BQ9ULV0 1848 aa33.55■■■□□ 2.96
LSM6-203ENST00000503982 CHGAP10645 457 aaKnown RBP33.53■■■□□ 2.96
LSM6-203ENST00000503982 IQGAP3Q86VI3 1631 aa33.53■■■□□ 2.96
LSM6-203ENST00000503982 E9PCH4 1651 aa33.52■■■□□ 2.96
LSM6-203ENST00000503982 NUP155O75694 1391 aa33.51■■■□□ 2.96
LSM6-203ENST00000503982 LRRC7Q96NW7 1537 aa33.5■■■□□ 2.95
LSM6-203ENST00000503982 SENP3Q9H4L4 574 aaPredicted RBP33.48■■■□□ 2.95
LSM6-203ENST00000503982 PPP1R15AO75807 674 aaPredicted RBP33.46■■■□□ 2.95
LSM6-203ENST00000503982 SLC26A8Q96RN1 970 aa33.45■■■□□ 2.95
LSM6-203ENST00000503982 RRBP1Q9P2E9 1410 aaKnown RBP33.42■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms