RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 PLA2R1Q13018 1463 aa18.76■□□□□ 0.59
MED28-203ENST00000503945 KIF3BO15066 747 aa18.75■□□□□ 0.59
MED28-203ENST00000503945 FBXO31Q5XUX0 539 aaPredicted RBP18.75■□□□□ 0.59
MED28-203ENST00000503945 TCOF1Q13428 1488 aaKnown RBP18.75■□□□□ 0.59
MED28-203ENST00000503945 UBAP1LF5GYI3 381 aa18.73■□□□□ 0.59
MED28-203ENST00000503945 LRRC9Q6ZRR7 1453 aa18.72■□□□□ 0.59
MED28-203ENST00000503945 DNMT1P26358 1616 aaKnown RBP18.72■□□□□ 0.59
MED28-203ENST00000503945 SOCS7O14512 581 aa18.72■□□□□ 0.59
MED28-203ENST00000503945 A2ML1A8K2U0 1454 aa18.71■□□□□ 0.59
MED28-203ENST00000503945 SPATA31D1Q6ZQQ2 1576 aa18.69■□□□□ 0.58
MED28-203ENST00000503945 WASHC2CQ9Y4E1 1318 aa18.69■□□□□ 0.58
MED28-203ENST00000503945 CAMSAP2Q08AD1 1489 aa18.68■□□□□ 0.58
MED28-203ENST00000503945 CCDC141Q6ZP82 1450 aa18.68■□□□□ 0.58
MED28-203ENST00000503945 MAP3K1Q13233 1512 aa18.68■□□□□ 0.58
MED28-203ENST00000503945 TNRQ92752 1358 aa18.68■□□□□ 0.58
MED28-203ENST00000503945 PZPP20742 1482 aa18.64■□□□□ 0.57
MED28-203ENST00000503945 KDM5DQ9BY66 1539 aa18.63■□□□□ 0.57
MED28-203ENST00000503945 POLR1AO95602 1720 aaPredicted RBP18.63■□□□□ 0.57
MED28-203ENST00000503945 ANKLE2Q86XL3 938 aa18.62■□□□□ 0.57
MED28-203ENST00000503945 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.62■□□□□ 0.57
MED28-203ENST00000503945 MIA2Q96PC5 1412 aa18.62■□□□□ 0.57
MED28-203ENST00000503945 NEURL4Q96JN8 1562 aa18.61■□□□□ 0.57
MED28-203ENST00000503945 THEMISQ8N1K5 641 aaPredicted RBP18.61■□□□□ 0.57
MED28-203ENST00000503945 ARHGEF5Q12774 1597 aa18.6■□□□□ 0.57
MED28-203ENST00000503945 MYOM3Q5VTT5 1437 aa18.59■□□□□ 0.57
MED28-203ENST00000503945 FAM135AQ9P2D6 1515 aa18.59■□□□□ 0.57
MED28-203ENST00000503945 SHANK2Q9UPX8 1470 aa18.58■□□□□ 0.57
MED28-203ENST00000503945 PIP4K2BP78356 416 aa18.58■□□□□ 0.56
MED28-203ENST00000503945 CFAP65Q6ZU64 1925 aaKnown RBP18.58■□□□□ 0.56
MED28-203ENST00000503945 SCAF1Q9H7N4 1312 aaKnown RBP18.57■□□□□ 0.56
MED28-203ENST00000503945 TOM1O60784 492 aa18.56■□□□□ 0.56
MED28-203ENST00000503945 HSPA1LP34931 641 aa18.56■□□□□ 0.56
MED28-203ENST00000503945 UGGT1Q9NYU2 1555 aa18.55■□□□□ 0.56
MED28-203ENST00000503945 CPS1P31327 1500 aa18.55■□□□□ 0.56
MED28-203ENST00000503945 NLRP1Q9C000 1473 aa18.55■□□□□ 0.56
MED28-203ENST00000503945 RRP7BPQ9NSQ0 103 aa18.54■□□□□ 0.56
MED28-203ENST00000503945 NPHP4O75161 1426 aaPredicted RBP18.53■□□□□ 0.56
MED28-203ENST00000503945 VWDEQ8N2E2 1590 aa18.53■□□□□ 0.56
MED28-203ENST00000503945 MED14O60244 1454 aa18.52■□□□□ 0.56
MED28-203ENST00000503945 RNF17Q9BXT8 1623 aaKnown RBP18.52■□□□□ 0.55
MED28-203ENST00000503945 MAST1Q9Y2H9 1570 aa18.51■□□□□ 0.55
MED28-203ENST00000503945 ABCC3O15438 1527 aa18.51■□□□□ 0.55
MED28-203ENST00000503945 DEPDC5O75140 1603 aa18.51■□□□□ 0.55
MED28-203ENST00000503945 CHIC2Q9UKJ5 165 aa18.49■□□□□ 0.55
MED28-203ENST00000503945 STRCP1A6NGW2 1772 aa18.47■□□□□ 0.55
MED28-203ENST00000503945 IQGAP1P46940 1657 aa18.47■□□□□ 0.55
MED28-203ENST00000503945 CEP152O94986 1710 aa18.47■□□□□ 0.55
MED28-203ENST00000503945 FAM50AQ14320 339 aaKnown RBP18.47■□□□□ 0.55
MED28-203ENST00000503945 ZC3H13Q5T200 1668 aaKnown RBP18.47■□□□□ 0.55
MED28-203ENST00000503945 ERVK-7P63135 1459 aa18.46■□□□□ 0.55
MED28-203ENST00000503945 MROH1Q8NDA8 1641 aa18.46■□□□□ 0.55
MED28-203ENST00000503945 EIF2AK4Q9P2K8 1649 aaKnown RBP18.46■□□□□ 0.55
MED28-203ENST00000503945 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.46■□□□□ 0.554e-7■□□□□ 9.7
MED28-203ENST00000503945 ABCC5O15440 1437 aa18.46■□□□□ 0.55
MED28-203ENST00000503945 ALKQ9UM73 1620 aa18.45■□□□□ 0.54
MED28-203ENST00000503945 FGD6Q6ZV73 1430 aa18.44■□□□□ 0.54
MED28-203ENST00000503945 KIF15Q9NS87 1388 aa18.43■□□□□ 0.54
MED28-203ENST00000503945 UBR1Q8IWV7 1749 aa18.43■□□□□ 0.54
MED28-203ENST00000503945 MED1Q15648 1581 aaPredicted RBP18.42■□□□□ 0.54
MED28-203ENST00000503945 LTKP29376 864 aa18.42■□□□□ 0.54
MED28-203ENST00000503945 LRRC7Q96NW7 1537 aa18.42■□□□□ 0.54
MED28-203ENST00000503945 DUOX2Q9NRD8 1548 aa18.42■□□□□ 0.54
MED28-203ENST00000503945 ANKRD30AQ9BXX3 1397 aa18.42■□□□□ 0.54
MED28-203ENST00000503945 DAPK1P53355 1430 aa18.4■□□□□ 0.54
MED28-203ENST00000503945 TXNDC2Q86VQ3 553 aa18.4■□□□□ 0.54
MED28-203ENST00000503945 SENP3Q9H4L4 574 aaPredicted RBP18.4■□□□□ 0.54
MED28-203ENST00000503945 PTPN23Q9H3S7 1636 aa18.39■□□□□ 0.53
MED28-203ENST00000503945 KANK1Q14678 1352 aa18.38■□□□□ 0.53
MED28-203ENST00000503945 ARHGAP31Q2M1Z3 1444 aa18.37■□□□□ 0.53
MED28-203ENST00000503945 SCAF11Q99590 1463 aaKnown RBP18.36■□□□□ 0.53
MED28-203ENST00000503945 ARHGAP23Q9P227 1491 aa18.35■□□□□ 0.53
MED28-203ENST00000503945 CROCC2H7BZ55 1655 aa18.34■□□□□ 0.53
MED28-203ENST00000503945 SLIT1O75093 1534 aa18.34■□□□□ 0.53
MED28-203ENST00000503945 ERBINQ96RT1 1412 aa18.34■□□□□ 0.53
MED28-203ENST00000503945 PPARGC1BQ86YN6 1023 aaKnown RBP18.34■□□□□ 0.53
MED28-203ENST00000503945 EID1Q9Y6B2 187 aa18.34■□□□□ 0.53
MED28-203ENST00000503945 SYNMO15061 1565 aa18.33■□□□□ 0.52
MED28-203ENST00000503945 PRDM15P57071 1507 aaPredicted RBP18.33■□□□□ 0.52
MED28-203ENST00000503945 XIRP1Q702N8 1843 aaKnown RBP18.33■□□□□ 0.52
MED28-203ENST00000503945 PHF23Q9BUL5 403 aaPredicted RBP18.32■□□□□ 0.52
MED28-203ENST00000503945 STAG3Q9UJ98 1225 aa18.32■□□□□ 0.52
MED28-203ENST00000503945 PIK3C2BO00750 1634 aa18.31■□□□□ 0.52
MED28-203ENST00000503945 IDI1Q13907 227 aa18.31■□□□□ 0.52
MED28-203ENST00000503945 TMEM2Q9UHN6 1383 aa18.3■□□□□ 0.52
MED28-203ENST00000503945 ITGAEP38570 1179 aa18.27■□□□□ 0.52
MED28-203ENST00000503945 SLC26A8Q96RN1 970 aa18.25■□□□□ 0.51
MED28-203ENST00000503945 ANKRD50Q9ULJ7 1429 aa18.24■□□□□ 0.51
MED28-203ENST00000503945 KCNA6P17658 529 aa18.24■□□□□ 0.51
MED28-203ENST00000503945 LMTK2Q8IWU2 1503 aa18.23■□□□□ 0.51
MED28-203ENST00000503945 KDM5AP29375 1690 aaKnown RBP18.23■□□□□ 0.51
MED28-203ENST00000503945 RBM33Q96EV2 1170 aaKnown RBP18.23■□□□□ 0.51
MED28-203ENST00000503945 SLC52A1Q9NWF4 448 aa18.23■□□□□ 0.51
MED28-203ENST00000503945 RGS17Q9UGC6 210 aaPredicted RBP18.23■□□□□ 0.51
MED28-203ENST00000503945 EFCAB6Q5THR3 1501 aa18.23■□□□□ 0.51
MED28-203ENST00000503945 PROSER2Q86WR7 435 aaPredicted RBP18.22■□□□□ 0.51
MED28-203ENST00000503945 TET3O43151 1660 aa18.22■□□□□ 0.51
MED28-203ENST00000503945 ADGRL2O95490 1459 aa18.21■□□□□ 0.51
MED28-203ENST00000503945 NOS1P29475 1434 aa18.21■□□□□ 0.51
MED28-203ENST00000503945 TMEM94Q12767 1356 aa18.2■□□□□ 0.5
MED28-203ENST00000503945 FAM135BQ49AJ0 1406 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms