RNA–Protein interactions for RNA: ENST00000503121.5

SYNE4-206, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-206ENST00000503121 KIF15Q9NS87 1388 aa18.52■□□□□ 0.55
SYNE4-206ENST00000503121 SHANK2Q9UPX8 1470 aa18.52■□□□□ 0.55
SYNE4-206ENST00000503121 DNMT1P26358 1616 aaKnown RBP18.5■□□□□ 0.55
SYNE4-206ENST00000503121 DUOX2Q9NRD8 1548 aa18.49■□□□□ 0.55
SYNE4-206ENST00000503121 ANKRD30AQ9BXX3 1397 aa18.49■□□□□ 0.55
SYNE4-206ENST00000503121 PTPRKQ15262 1439 aa18.49■□□□□ 0.55
SYNE4-206ENST00000503121 KDM5DQ9BY66 1539 aa18.48■□□□□ 0.55
SYNE4-206ENST00000503121 CROCC2H7BZ55 1655 aa18.47■□□□□ 0.55
SYNE4-206ENST00000503121 FBXO31Q5XUX0 539 aaPredicted RBP18.46■□□□□ 0.55
SYNE4-206ENST00000503121 FAM135AQ9P2D6 1515 aa18.44■□□□□ 0.54
SYNE4-206ENST00000503121 ERBINQ96RT1 1412 aa18.44■□□□□ 0.54
SYNE4-206ENST00000503121 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.44■□□□□ 0.54
SYNE4-206ENST00000503121 DMRT2Q9Y5R5 561 aa18.44■□□□□ 0.54
SYNE4-206ENST00000503121 EIF2AK4Q9P2K8 1649 aaKnown RBP18.44■□□□□ 0.54
SYNE4-206ENST00000503121 NCOA1Q15788 1441 aa18.43■□□□□ 0.54
SYNE4-206ENST00000503121 RNF17Q9BXT8 1623 aaKnown RBP18.42■□□□□ 0.54
SYNE4-206ENST00000503121 PZPP20742 1482 aa18.41■□□□□ 0.54
SYNE4-206ENST00000503121 ITGAEP38570 1179 aa18.41■□□□□ 0.54
SYNE4-206ENST00000503121 TNRQ92752 1358 aa18.41■□□□□ 0.54
SYNE4-206ENST00000503121 ABCC3O15438 1527 aa18.39■□□□□ 0.54
SYNE4-206ENST00000503121 KANK1Q14678 1352 aa18.38■□□□□ 0.53
SYNE4-206ENST00000503121 ADGRL2O95490 1459 aa18.38■□□□□ 0.53
SYNE4-206ENST00000503121 MROH1Q8NDA8 1641 aa18.37■□□□□ 0.53
SYNE4-206ENST00000503121 MYO3AQ8NEV4 1616 aa18.37■□□□□ 0.53
SYNE4-206ENST00000503121 CAMSAP1Q5T5Y3 1602 aa18.36■□□□□ 0.53
SYNE4-206ENST00000503121 CEP170BQ9Y4F5 1589 aaPredicted RBP18.36■□□□□ 0.53
SYNE4-206ENST00000503121 STRCQ7RTU9 1775 aa18.35■□□□□ 0.53
SYNE4-206ENST00000503121 ZC3H13Q5T200 1668 aaKnown RBP18.35■□□□□ 0.53
SYNE4-206ENST00000503121 NCKAP5LQ9HCH0 1330 aa18.35■□□□□ 0.53
SYNE4-206ENST00000503121 A2ML1A8K2U0 1454 aa18.34■□□□□ 0.53
SYNE4-206ENST00000503121 ANKRD50Q9ULJ7 1429 aa18.34■□□□□ 0.53
SYNE4-206ENST00000503121 ILDR1Q86SU0 546 aaPredicted RBP18.34■□□□□ 0.53
SYNE4-206ENST00000503121 PRDM15P57071 1507 aaPredicted RBP18.33■□□□□ 0.53
SYNE4-206ENST00000503121 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.33■□□□□ 0.53
SYNE4-206ENST00000503121 CEP152O94986 1710 aa18.32■□□□□ 0.52
SYNE4-206ENST00000503121 PKD2Q13563 968 aa18.32■□□□□ 0.52
SYNE4-206ENST00000503121 PTPRTO14522 1441 aa18.32■□□□□ 0.52
SYNE4-206ENST00000503121 ZNF142P52746 1687 aaPredicted RBP18.31■□□□□ 0.52
SYNE4-206ENST00000503121 THEMISQ8N1K5 641 aaPredicted RBP18.31■□□□□ 0.52
SYNE4-206ENST00000503121 ROCK1Q13464 1354 aa18.3■□□□□ 0.52
SYNE4-206ENST00000503121 ERVK-7P63135 1459 aa18.3■□□□□ 0.52
SYNE4-206ENST00000503121 NLRP1Q9C000 1473 aa18.3■□□□□ 0.52
SYNE4-206ENST00000503121 DEPDC5O75140 1603 aa18.3■□□□□ 0.52
SYNE4-206ENST00000503121 PLA2R1Q13018 1463 aa18.29■□□□□ 0.52
SYNE4-206ENST00000503121 CFAP65Q6ZU64 1925 aaKnown RBP18.29■□□□□ 0.52
SYNE4-206ENST00000503121 ARHGAP31Q2M1Z3 1444 aa18.28■□□□□ 0.52
SYNE4-206ENST00000503121 SPATA31D1Q6ZQQ2 1576 aa18.28■□□□□ 0.52
SYNE4-206ENST00000503121 RRBP1Q9P2E9 1410 aaKnown RBP18.27■□□□□ 0.52
SYNE4-206ENST00000503121 CERKQ8TCT0 537 aa18.27■□□□□ 0.52
SYNE4-206ENST00000503121 UGGT1Q9NYU2 1555 aa18.25■□□□□ 0.51
SYNE4-206ENST00000503121 ANKLE2Q86XL3 938 aa18.25■□□□□ 0.51
SYNE4-206ENST00000503121 FBXO41Q8TF61 875 aa18.25■□□□□ 0.51
SYNE4-206ENST00000503121 LMTK2Q8IWU2 1503 aa18.23■□□□□ 0.51
SYNE4-206ENST00000503121 VWDEQ8N2E2 1590 aa18.23■□□□□ 0.51
SYNE4-206ENST00000503121 STAG3Q9UJ98 1225 aa18.22■□□□□ 0.51
SYNE4-206ENST00000503121 EFCAB6Q5THR3 1501 aa18.18■□□□□ 0.5
SYNE4-206ENST00000503121 NUP155O75694 1391 aa18.18■□□□□ 0.5
SYNE4-206ENST00000503121 IDI1Q13907 227 aa18.18■□□□□ 0.5
SYNE4-206ENST00000503121 ZNF335Q9H4Z2 1342 aaPredicted RBP18.18■□□□□ 0.5
SYNE4-206ENST00000503121 UNC13BO14795 1591 aa18.16■□□□□ 0.5
SYNE4-206ENST00000503121 SLC52A1Q9NWF4 448 aa18.15■□□□□ 0.5
SYNE4-206ENST00000503121 NOS1P29475 1434 aa18.15■□□□□ 0.5
SYNE4-206ENST00000503121 RPRD2Q5VT52 1461 aaKnown RBP18.14■□□□□ 0.5
SYNE4-206ENST00000503121 TXNDC2Q86VQ3 553 aa18.14■□□□□ 0.49
SYNE4-206ENST00000503121 EID1Q9Y6B2 187 aa18.14■□□□□ 0.49
SYNE4-206ENST00000503121 POLR1AO95602 1720 aaPredicted RBP18.14■□□□□ 0.49
SYNE4-206ENST00000503121 NPHP4O75161 1426 aaPredicted RBP18.14■□□□□ 0.49
SYNE4-206ENST00000503121 TET3O43151 1660 aa18.13■□□□□ 0.49
SYNE4-206ENST00000503121 NEURL4Q96JN8 1562 aa18.13■□□□□ 0.49
SYNE4-206ENST00000503121 LTBP4Q8N2S1 1624 aa18.12■□□□□ 0.49
SYNE4-206ENST00000503121 UBR1Q8IWV7 1749 aa18.12■□□□□ 0.49
SYNE4-206ENST00000503121 LTKP29376 864 aa18.11■□□□□ 0.49
SYNE4-206ENST00000503121 NAIPQ13075 1403 aa18.11■□□□□ 0.49
SYNE4-206ENST00000503121 SYNMO15061 1565 aa18.11■□□□□ 0.49
SYNE4-206ENST00000503121 PIK3C2BO00750 1634 aa18.11■□□□□ 0.49
SYNE4-206ENST00000503121 MED14O60244 1454 aa18.1■□□□□ 0.49
SYNE4-206ENST00000503121 IQGAP3Q86VI3 1631 aa18.09■□□□□ 0.49
SYNE4-206ENST00000503121 SCAF11Q99590 1463 aaKnown RBP18.09■□□□□ 0.49
SYNE4-206ENST00000503121 TMEM2Q9UHN6 1383 aa18.09■□□□□ 0.49
SYNE4-206ENST00000503121 GCC2Q8IWJ2 1684 aa18.09■□□□□ 0.49
SYNE4-206ENST00000503121 CHGAP10645 457 aaKnown RBP18.08■□□□□ 0.48
SYNE4-206ENST00000503121 TRIM52Q96A61 297 aa18.08■□□□□ 0.48
SYNE4-206ENST00000503121 SLIT1O75093 1534 aa18.08■□□□□ 0.48
SYNE4-206ENST00000503121 ARHGAP23Q9P227 1491 aa18.07■□□□□ 0.48
SYNE4-206ENST00000503121 HFM1A2PYH4 1435 aa18.06■□□□□ 0.48
SYNE4-206ENST00000503121 E9PCH4 1651 aa18.06■□□□□ 0.48
SYNE4-206ENST00000503121 IQGAP1P46940 1657 aa18.05■□□□□ 0.48
SYNE4-206ENST00000503121 BCANQ96GW7 911 aa18.04■□□□□ 0.48
SYNE4-206ENST00000503121 ADGRB3O60242 1522 aa18.03■□□□□ 0.48
SYNE4-206ENST00000503121 KDM5AP29375 1690 aaKnown RBP18.03■□□□□ 0.48
SYNE4-206ENST00000503121 IQSEC2Q5JU85 1478 aa18.03■□□□□ 0.48
SYNE4-206ENST00000503121 HDGFP51858 240 aaKnown RBP18.03■□□□□ 0.48
SYNE4-206ENST00000503121 PPP1R15AO75807 674 aaPredicted RBP18.01■□□□□ 0.47
SYNE4-206ENST00000503121 CPS1P31327 1500 aa18■□□□□ 0.47
SYNE4-206ENST00000503121 UBAP1LF5GYI3 381 aa18■□□□□ 0.47
SYNE4-206ENST00000503121 SENP3Q9H4L4 574 aaPredicted RBP18■□□□□ 0.47
SYNE4-206ENST00000503121 SLC26A8Q96RN1 970 aa17.99■□□□□ 0.47
SYNE4-206ENST00000503121 SLC4A1APQ9BWU0 796 aaKnown RBP17.99■□□□□ 0.47
SYNE4-206ENST00000503121 RIMS2Q9UQ26 1411 aa17.98■□□□□ 0.47
SYNE4-206ENST00000503121 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms