RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	BCAR3	O75815	825 aa		13.58	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	ADAMTS8	Q9UP79	889 aa		13.58	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	BCL2L13	Q9BXK5	485 aa		13.58	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	TRAK2	O60296	914 aa		13.57	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	ANP32B	Q92688	251 aa	Known RBP	13.57	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	ESPN	B1AK53	854 aa		13.57	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.57	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	PANK1	Q8TE04	598 aa		13.57	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	PTPN23	Q9H3S7	1636 aa		13.56	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	MYOM3	Q5VTT5	1437 aa		13.56	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	GOLGA2	Q08379	1002 aa		13.55	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.55	□□□□□ -0.24	1e-7	■□□□□ 8.7
TRAPPC12-223	ENST00000497597	BRD4	O60885	1362 aa	Predicted RBP	13.55	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	PANK3	Q9H999	370 aa		13.55	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	MCM4	P33991	863 aa		13.53	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	CLCN1	P35523	988 aa		13.53	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	IGHD	P01880	384 aa		13.53	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	KIAA1211	Q6ZU35	1233 aa		13.52	□□□□□ -0.24
TRAPPC12-223	ENST00000497597	PRDM10	Q9NQV6	1147 aa		13.52	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	ERBB4	Q15303	1308 aa		13.52	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	TBC1D2	Q9BYX2	928 aa		13.52	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	MSN	P26038	577 aa	Known RBP	13.51	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	TNNT2	P45379	298 aa	Predicted RBP	13.51	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	TPRN	Q4KMQ1	711 aa		13.51	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	GRPEL1	Q9HAV7	217 aa		13.51	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	IFT140	Q96RY7	1462 aa		13.51	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	ABCA5	Q8WWZ7	1642 aa		13.51	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	APAF1	O14727	1248 aa		13.51	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	ROCK2	O75116	1388 aa	Known RBP	13.5	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	ANKRD30B	Q9BXX2	1392 aa		13.5	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.5	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	KNSTRN	Q9Y448	316 aa		13.5	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	CASKIN1	Q8WXD9	1431 aa		13.5	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	POLA1	P09884	1462 aa	Predicted RBP	13.5	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	MRE11	P49959	708 aa		13.49	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	HSCB	Q8IWL3	235 aa		13.49	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	HSP90AB1	P08238	724 aa	Known RBP	13.49	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	RRP7A	Q9Y3A4	280 aa	Known RBP	13.49	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	KDM2B	Q8NHM5	1336 aa		13.48	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.48	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.47	□□□□□ -0.25	3e-6	■■■■□ 26.4
TRAPPC12-223	ENST00000497597	NBPF1	Q3BBV0	1214 aa		13.47	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.47	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	EIF4G3	O43432	1585 aa	Known RBP	13.47	□□□□□ -0.25
TRAPPC12-223	ENST00000497597	CHMP5	Q9NZZ3	219 aa		13.46	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	PBRM1	Q86U86	1689 aa		13.45	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	ABCA10	Q8WWZ4	1543 aa		13.45	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	DENND4B	O75064	1496 aa	Predicted RBP	13.45	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	FGD5	Q6ZNL6	1462 aa		13.45	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	DUSP27	Q5VZP5	1158 aa		13.45	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	FYCO1	Q9BQS8	1478 aa		13.44	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.44	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	KDM6B	O15054	1643 aa		13.44	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	LRPPRC	P42704	1394 aa	Known RBP	13.44	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	MPND	Q8N594	471 aa		13.43	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	NUP155	O75694	1391 aa		13.43	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	PDZRN3	Q9UPQ7	1066 aa		13.43	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	SPATA31E1	Q6ZUB1	1445 aa		13.43	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	USP19	O94966	1318 aa		13.43	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	C22orf23	Q9BZE7	217 aa		13.42	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	MAPK8IP3	Q9UPT6	1336 aa		13.42	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	RPRD2	Q5VT52	1461 aa	Known RBP	13.42	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	TDRD9	Q8NDG6	1382 aa	Known RBP	13.42	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.41	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.41	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	TNN	Q9UQP3	1299 aa		13.41	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	RAD54L2	Q9Y4B4	1467 aa		13.41	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	FTSJ3	Q8IY81	847 aa	Known RBP	13.4	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	PDCL3	Q9H2J4	239 aa		13.4	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	MIA2	Q96PC5	1412 aa		13.4	□□□□□ -0.26
TRAPPC12-223	ENST00000497597	PTMA	P06454	111 aa	Known RBP	13.39	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	TPM2	P07951	284 aa		13.39	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	DDX11L8	A8MPP1	907 aa		13.39	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	DDX49	Q9Y6V7	483 aa	Known RBP	13.39	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.39	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.39	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	PLEKHH1	Q9ULM0	1364 aa		13.38	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	NASP	P49321	788 aa	Predicted RBP	13.38	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	TMF1	P82094	1093 aa		13.38	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	XPC	Q01831	940 aa	Predicted RBP	13.38	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	GBP4	Q96PP9	640 aa		13.38	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	GOLGA6L22	H0YM25	854 aa		13.38	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	GAS2L3	Q86XJ1	694 aa		13.37	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	BCORL1	Q5H9F3	1711 aa		13.36	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	CGNL1	Q0VF96	1302 aa		13.36	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	TBC1D32	Q96NH3	1257 aa		13.36	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	SENP3	Q9H4L4	574 aa	Predicted RBP	13.36	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	TSPY4	P0CV99	314 aa		13.35	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	TSPY10	P0CW01	314 aa		13.35	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	PPP2R1A	P30153	589 aa		13.35	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	SLFN5	Q08AF3	891 aa		13.35	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	ANTXR1	Q9H6X2	564 aa		13.35	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.35	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	UQCRHL	A0A096LP55	91 aa		13.34	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	FSD2	A1L4K1	749 aa		13.34	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	UQCRH	P07919	91 aa		13.34	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	AAMP	Q13685	434 aa		13.34	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	RWDD1	Q9H446	243 aa	Predicted RBP	13.34	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	DMRT2	Q9Y5R5	561 aa		13.34	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	TEX14	Q8IWB6	1497 aa		13.34	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 36 ms