RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 ABCC1P33527 1531 aa15.25■□□□□ 0.03
CMSS1-208ENST00000496116 FKBP8Q14318 412 aa15.25■□□□□ 0.03
CMSS1-208ENST00000496116 ROCK2O75116 1388 aaKnown RBP15.24■□□□□ 0.03
CMSS1-208ENST00000496116 KDM2AQ9Y2K7 1162 aa15.24■□□□□ 0.03
CMSS1-208ENST00000496116 ARAP3Q8WWN8 1544 aa15.24■□□□□ 0.03
CMSS1-208ENST00000496116 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.23■□□□□ 0.032e-10■■■■□ 23
CMSS1-208ENST00000496116 MAGI2Q86UL8 1455 aa15.22■□□□□ 0.03
CMSS1-208ENST00000496116 MRS2Q9HD23 443 aa15.22■□□□□ 0.03
CMSS1-208ENST00000496116 POLR3GLQ9BT43 218 aa15.19■□□□□ 0.02
CMSS1-208ENST00000496116 ATP10AO60312 1499 aa15.19■□□□□ 0.02
CMSS1-208ENST00000496116 RTEL1-TNFRSF6BF6WH68 1400 aa15.19■□□□□ 0.02
CMSS1-208ENST00000496116 CCDC184Q52MB2 194 aa15.19■□□□□ 0.02
CMSS1-208ENST00000496116 DHX29Q7Z478 1369 aaKnown RBP15.18■□□□□ 0.02
CMSS1-208ENST00000496116 TRPM1Q7Z4N2 1603 aa15.18■□□□□ 0.02
CMSS1-208ENST00000496116 PRAG1Q86YV5 1406 aa15.18■□□□□ 0.02
CMSS1-208ENST00000496116 TRAPPC8Q9Y2L5 1435 aa15.18■□□□□ 0.02
CMSS1-208ENST00000496116 PLA2R1Q13018 1463 aa15.18■□□□□ 0.02
CMSS1-208ENST00000496116 WDR7Q9Y4E6 1490 aa15.18■□□□□ 0.02
CMSS1-208ENST00000496116 FAM9BQ8IZU0 186 aa15.17■□□□□ 0.02
CMSS1-208ENST00000496116 ST20-MTHFSA0A0A6YYL1 179 aa15.17■□□□□ 0.02
CMSS1-208ENST00000496116 SPAG9O60271 1321 aaKnown RBP15.16■□□□□ 0.02
CMSS1-208ENST00000496116 BCANQ96GW7 911 aa15.16■□□□□ 0.02
CMSS1-208ENST00000496116 EIF2AK4Q9P2K8 1649 aaKnown RBP15.15■□□□□ 0.02
CMSS1-208ENST00000496116 A2MP01023 1474 aa15.14■□□□□ 0.01
CMSS1-208ENST00000496116 RGL3Q3MIN7 710 aa15.14■□□□□ 0.01
CMSS1-208ENST00000496116 ZFYVE16Q7Z3T8 1539 aa15.14■□□□□ 0.01
CMSS1-208ENST00000496116 LAMC1P11047 1609 aa15.14■□□□□ 0.01
CMSS1-208ENST00000496116 ZBED9Q6R2W3 1325 aa15.13■□□□□ 0.01
CMSS1-208ENST00000496116 ABCA9Q8IUA7 1624 aa15.13■□□□□ 0.01
CMSS1-208ENST00000496116 GPRASP1Q5JY77 1395 aa15.13■□□□□ 0.01
CMSS1-208ENST00000496116 FANCAO15360 1455 aa15.12■□□□□ 0.01
CMSS1-208ENST00000496116 AFAP1Q8N556 730 aa15.11■□□□□ 0.01
CMSS1-208ENST00000496116 KTN1Q86UP2 1357 aaKnown RBP15.11■□□□□ 0.01
CMSS1-208ENST00000496116 E9PCH4 1651 aa15.09■□□□□ 0.01
CMSS1-208ENST00000496116 PRDM15P57071 1507 aaPredicted RBP15.09■□□□□ 0.01
CMSS1-208ENST00000496116 ATP7AQ04656 1500 aa15.09■□□□□ 0.01
CMSS1-208ENST00000496116 DEPDC5O75140 1603 aa15.09■□□□□ 0.01
CMSS1-208ENST00000496116 INO80Q9ULG1 1556 aaPredicted RBP15.09■□□□□ 0.01
CMSS1-208ENST00000496116 KANK1Q14678 1352 aa15.07■□□□□ 0
CMSS1-208ENST00000496116 ADGRL1O94910 1474 aa15.07■□□□□ 0
CMSS1-208ENST00000496116 NBPF1Q3BBV0 1214 aa15.07■□□□□ 0
CMSS1-208ENST00000496116 TRPM2O94759 1503 aa15.06■□□□□ 0
CMSS1-208ENST00000496116 ASXL2Q76L83 1435 aa15.06■□□□□ 0
CMSS1-208ENST00000496116 RALBP1Q15311 655 aa15.06■□□□□ 0
CMSS1-208ENST00000496116 SPHKAPQ2M3C7 1700 aa15.06■□□□□ 0
CMSS1-208ENST00000496116 CNGB1Q14028 1251 aaPredicted RBP15.05■□□□□ 0
CMSS1-208ENST00000496116 ERICH6BQ5W0A0 696 aa15.05■□□□□ 0
CMSS1-208ENST00000496116 TET3O43151 1660 aa15.05■□□□□ 0
CMSS1-208ENST00000496116 STAC3Q96MF2 364 aa15.05■□□□□ -0
CMSS1-208ENST00000496116 TSHZ2Q9NRE2 1034 aa15.05■□□□□ -0
CMSS1-208ENST00000496116 SCAPERQ9BY12 1400 aa15.05■□□□□ -0
CMSS1-208ENST00000496116 CEP152O94986 1710 aa15.05■□□□□ -0
CMSS1-208ENST00000496116 TMC1Q8TDI8 760 aa15.04■□□□□ -0
CMSS1-208ENST00000496116 PTPRTO14522 1441 aa15.04■□□□□ -0
CMSS1-208ENST00000496116 RNF17Q9BXT8 1623 aaKnown RBP15.04■□□□□ -0
CMSS1-208ENST00000496116 MYT1LQ9UL68 1186 aa15.04■□□□□ -0
CMSS1-208ENST00000496116 COL17A1Q9UMD9 1497 aaPredicted RBP15.04■□□□□ -0
CMSS1-208ENST00000496116 MYBBP1AQ9BQG0 1328 aaKnown RBP15.03■□□□□ -0
CMSS1-208ENST00000496116 NPM1P06748 294 aaKnown RBP eCLIP15.02■□□□□ -0
CMSS1-208ENST00000496116 BRD4O60885 1362 aaPredicted RBP15.02■□□□□ -0
CMSS1-208ENST00000496116 VWDEQ8N2E2 1590 aa15.02□□□□□ -0.01
CMSS1-208ENST00000496116 OSCARQ8IYS5 282 aa15.01□□□□□ -0.01
CMSS1-208ENST00000496116 TMF1P82094 1093 aa15.01□□□□□ -0.01
CMSS1-208ENST00000496116 PNISRQ8TF01 805 aaKnown RBP15.01□□□□□ -0.01
CMSS1-208ENST00000496116 MADDQ8WXG6 1647 aa15□□□□□ -0.01
CMSS1-208ENST00000496116 KIF3BO15066 747 aa14.99□□□□□ -0.01
CMSS1-208ENST00000496116 CLTCL1P53675 1640 aa14.99□□□□□ -0.01
CMSS1-208ENST00000496116 TESK2Q96S53 571 aa14.99□□□□□ -0.01
CMSS1-208ENST00000496116 WASHC2CQ9Y4E1 1318 aa14.99□□□□□ -0.01
CMSS1-208ENST00000496116 CFAP74Q9C0B2 1584 aa14.98□□□□□ -0.01
CMSS1-208ENST00000496116 ZNF518AQ6AHZ1 1483 aa14.98□□□□□ -0.01
CMSS1-208ENST00000496116 NEURL4Q96JN8 1562 aa14.98□□□□□ -0.01
CMSS1-208ENST00000496116 SMG6Q86US8 1419 aaKnown RBP14.97□□□□□ -0.01
CMSS1-208ENST00000496116 DISP3Q9P2K9 1392 aa14.97□□□□□ -0.01
CMSS1-208ENST00000496116 PARD3Q8TEW0 1356 aa14.97□□□□□ -0.01
CMSS1-208ENST00000496116 KIDINS220Q9ULH0 1771 aa14.96□□□□□ -0.01
CMSS1-208ENST00000496116 LRPPRCP42704 1394 aaKnown RBP14.96□□□□□ -0.01
CMSS1-208ENST00000496116 IRX6P78412 446 aaPredicted RBP14.96□□□□□ -0.01
CMSS1-208ENST00000496116 NLRP13Q86W25 1043 aa14.96□□□□□ -0.01
CMSS1-208ENST00000496116 IQGAP1P46940 1657 aa14.95□□□□□ -0.02
CMSS1-208ENST00000496116 PER1O15534 1290 aaPredicted RBP14.95□□□□□ -0.02
CMSS1-208ENST00000496116 MROH1Q8NDA8 1641 aa14.95□□□□□ -0.02
CMSS1-208ENST00000496116 NUDCQ9Y266 331 aa14.95□□□□□ -0.02
CMSS1-208ENST00000496116 DNAJC5Q9H3Z4 198 aa14.94□□□□□ -0.02
CMSS1-208ENST00000496116 PPP4R2Q9NY27 417 aa14.93□□□□□ -0.02
CMSS1-208ENST00000496116 KIAA1210Q9ULL0 1709 aa14.93□□□□□ -0.02
CMSS1-208ENST00000496116 SCAF11Q99590 1463 aaKnown RBP14.93□□□□□ -0.02
CMSS1-208ENST00000496116 CD109Q6YHK3 1445 aa14.93□□□□□ -0.02
CMSS1-208ENST00000496116 EFCAB6Q5THR3 1501 aa14.93□□□□□ -0.02
CMSS1-208ENST00000496116 CDCA8Q53HL2 280 aa14.92□□□□□ -0.02
CMSS1-208ENST00000496116 KIF1BO60333 1816 aa14.92□□□□□ -0.02
CMSS1-208ENST00000496116 EIF3AQ14152 1382 aaKnown RBP14.92□□□□□ -0.02
CMSS1-208ENST00000496116 LMTK2Q8IWU2 1503 aa14.91□□□□□ -0.02
CMSS1-208ENST00000496116 PANK3Q9H999 370 aa14.91□□□□□ -0.02
CMSS1-208ENST00000496116 SLC24A1O60721 1099 aa14.9□□□□□ -0.02
CMSS1-208ENST00000496116 POGZQ7Z3K3 1410 aa14.9□□□□□ -0.02
CMSS1-208ENST00000496116 MYOM2P54296 1465 aa14.9□□□□□ -0.02
CMSS1-208ENST00000496116 MLH3Q9UHC1 1453 aa14.89□□□□□ -0.03
CMSS1-208ENST00000496116 PPRC1Q5VV67 1664 aaKnown RBP14.88□□□□□ -0.03
CMSS1-208ENST00000496116 HECW2Q9P2P5 1572 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms