RNA–Protein interactions for RNA: ENST00000495426.1

BBS9-213, Transcript of Bardet-Biedl syndrome 9, human

TSL 3

Gene BBS9, Length 481 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BBS9-213	ENST00000495426	PREX2	Q70Z35	1606 aa		12.04	□□□□□ -0.48
BBS9-213	ENST00000495426	GSE1	Q14687	1217 aa		12.04	□□□□□ -0.48
BBS9-213	ENST00000495426	FMN1	Q68DA7	1419 aa		12.03	□□□□□ -0.48
BBS9-213	ENST00000495426	DCAF8	Q5TAQ9	597 aa		12.03	□□□□□ -0.48
BBS9-213	ENST00000495426	DISP3	Q9P2K9	1392 aa		12.02	□□□□□ -0.49
BBS9-213	ENST00000495426	TRO	Q12816	1431 aa	Predicted RBP	12.02	□□□□□ -0.49
BBS9-213	ENST00000495426	ABCC1	P33527	1531 aa		12.01	□□□□□ -0.49
BBS9-213	ENST00000495426	CEBPA	P49715	358 aa	Predicted RBP	12.01	□□□□□ -0.49
BBS9-213	ENST00000495426	EFCAB2	Q5VUJ9	269 aa		12.01	□□□□□ -0.49
BBS9-213	ENST00000495426	ARHGAP35	Q9NRY4	1499 aa		12.01	□□□□□ -0.49
BBS9-213	ENST00000495426	CDC42BPA	Q5VT25	1732 aa		12	□□□□□ -0.49
BBS9-213	ENST00000495426	RGL2	O15211	777 aa		12	□□□□□ -0.49
BBS9-213	ENST00000495426	CLIP1	P30622	1438 aa		12	□□□□□ -0.49
BBS9-213	ENST00000495426	KIDINS220	Q9ULH0	1771 aa		12	□□□□□ -0.49
BBS9-213	ENST00000495426	CHADL	Q6NUI6	762 aa		11.99	□□□□□ -0.49
BBS9-213	ENST00000495426	AGL	P35573	1532 aa		11.99	□□□□□ -0.49
BBS9-213	ENST00000495426	MROH2A	A6NES4	1674 aa		11.99	□□□□□ -0.49
BBS9-213	ENST00000495426	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.98	□□□□□ -0.49
BBS9-213	ENST00000495426	FAM212A	Q96EL1	285 aa		11.98	□□□□□ -0.49
BBS9-213	ENST00000495426	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.98	□□□□□ -0.49
BBS9-213	ENST00000495426	LTBP4	Q8N2S1	1624 aa		11.97	□□□□□ -0.49
BBS9-213	ENST00000495426	MLH3	Q9UHC1	1453 aa		11.97	□□□□□ -0.49
BBS9-213	ENST00000495426	PTPRT	O14522	1441 aa		11.97	□□□□□ -0.49
BBS9-213	ENST00000495426	ILDR2	Q71H61	639 aa		11.97	□□□□□ -0.49
BBS9-213	ENST00000495426	AFAP1	Q8N556	730 aa		11.96	□□□□□ -0.49
BBS9-213	ENST00000495426	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.96	□□□□□ -0.49
BBS9-213	ENST00000495426	ZNF142	P52746	1687 aa	Predicted RBP	11.95	□□□□□ -0.5
BBS9-213	ENST00000495426	MYT1L	Q9UL68	1186 aa		11.95	□□□□□ -0.5
BBS9-213	ENST00000495426	IQSEC2	Q5JU85	1478 aa		11.95	□□□□□ -0.5
BBS9-213	ENST00000495426	NCOA1	Q15788	1441 aa		11.94	□□□□□ -0.5
BBS9-213	ENST00000495426	RASEF	Q8IZ41	740 aa		11.94	□□□□□ -0.5
BBS9-213	ENST00000495426	TRAPPC8	Q9Y2L5	1435 aa		11.94	□□□□□ -0.5
BBS9-213	ENST00000495426	CAMSAP1	Q5T5Y3	1602 aa		11.93	□□□□□ -0.5
BBS9-213	ENST00000495426	MYO3A	Q8NEV4	1616 aa		11.93	□□□□□ -0.5
BBS9-213	ENST00000495426	SOCS7	O14512	581 aa		11.93	□□□□□ -0.5
BBS9-213	ENST00000495426	CCDC18	Q5T9S5	1454 aa		11.93	□□□□□ -0.5
BBS9-213	ENST00000495426	CLTC	Q00610	1675 aa	Known RBP	11.93	□□□□□ -0.5
BBS9-213	ENST00000495426	CNTLN	Q9NXG0	1405 aa		11.93	□□□□□ -0.5
BBS9-213	ENST00000495426	PRKAR2A	P13861	404 aa	Known RBP	11.92	□□□□□ -0.5
BBS9-213	ENST00000495426	SAMD9L	Q8IVG5	1584 aa		11.92	□□□□□ -0.5
BBS9-213	ENST00000495426	SYCP2	Q9BX26	1530 aa		11.91	□□□□□ -0.5
BBS9-213	ENST00000495426	UBTF	P17480	764 aa	Known RBP	11.91	□□□□□ -0.5
BBS9-213	ENST00000495426	CHRDL2	Q6WN34	429 aa		11.91	□□□□□ -0.5
BBS9-213	ENST00000495426	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.91	□□□□□ -0.5
BBS9-213	ENST00000495426	FXR2	P51116	673 aa	Known RBP eCLIP	11.9	□□□□□ -0.5
BBS9-213	ENST00000495426	ESF1	Q9H501	851 aa	Known RBP	11.9	□□□□□ -0.5
BBS9-213	ENST00000495426	INO80	Q9ULG1	1556 aa	Predicted RBP	11.89	□□□□□ -0.51
BBS9-213	ENST00000495426	NPAT	Q14207	1427 aa		11.89	□□□□□ -0.51
BBS9-213	ENST00000495426	PLXNC1	O60486	1568 aa		11.88	□□□□□ -0.51
BBS9-213	ENST00000495426	ATP7A	Q04656	1500 aa		11.88	□□□□□ -0.51
BBS9-213	ENST00000495426	PLCB2	Q00722	1185 aa		11.88	□□□□□ -0.51
BBS9-213	ENST00000495426	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	11.88	□□□□□ -0.51
BBS9-213	ENST00000495426	CASKIN1	Q8WXD9	1431 aa		11.87	□□□□□ -0.51
BBS9-213	ENST00000495426	POLR1A	O95602	1720 aa	Predicted RBP	11.86	□□□□□ -0.51
BBS9-213	ENST00000495426	FYCO1	Q9BQS8	1478 aa		11.86	□□□□□ -0.51
BBS9-213	ENST00000495426	ADGB	Q8N7X0	1667 aa		11.86	□□□□□ -0.51
BBS9-213	ENST00000495426	BBX	Q8WY36	941 aa	Predicted RBP	11.85	□□□□□ -0.51
BBS9-213	ENST00000495426	PLA2R1	Q13018	1463 aa		11.84	□□□□□ -0.51
BBS9-213	ENST00000495426	CHGA	P10645	457 aa	Known RBP	11.84	□□□□□ -0.51
BBS9-213	ENST00000495426	PIP4P2	Q8N4L2	257 aa		11.83	□□□□□ -0.52
BBS9-213	ENST00000495426	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.83	□□□□□ -0.52
BBS9-213	ENST00000495426	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.83	□□□□□ -0.52
BBS9-213	ENST00000495426	TCOF1	Q13428	1488 aa	Known RBP	11.83	□□□□□ -0.52
BBS9-213	ENST00000495426	CHRM1	P11229	460 aa	Predicted RBP	11.82	□□□□□ -0.52
BBS9-213	ENST00000495426	RNF25	Q96BH1	459 aa	Predicted RBP	11.82	□□□□□ -0.52
BBS9-213	ENST00000495426	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.82	□□□□□ -0.52
BBS9-213	ENST00000495426	ZMYM3	Q14202	1370 aa		11.81	□□□□□ -0.52
BBS9-213	ENST00000495426	PYGB	P11216	843 aa		11.81	□□□□□ -0.52
BBS9-213	ENST00000495426	A2M	P01023	1474 aa		11.81	□□□□□ -0.52
BBS9-213	ENST00000495426	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.81	□□□□□ -0.52
BBS9-213	ENST00000495426	PTPRK	Q15262	1439 aa		11.8	□□□□□ -0.52
BBS9-213	ENST00000495426	RIOK3	O14730	519 aa	Known RBP	11.8	□□□□□ -0.52
BBS9-213	ENST00000495426	TAOK2	Q9UL54	1235 aa		11.8	□□□□□ -0.52
BBS9-213	ENST00000495426	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.8	□□□□□ -0.52
BBS9-213	ENST00000495426	PLEKHH2	Q8IVE3	1493 aa		11.8	□□□□□ -0.52
BBS9-213	ENST00000495426	SPAG9	O60271	1321 aa	Known RBP	11.8	□□□□□ -0.52
BBS9-213	ENST00000495426	NCKAP5L	Q9HCH0	1330 aa		11.8	□□□□□ -0.52
BBS9-213	ENST00000495426	DNMT1	P26358	1616 aa	Known RBP	11.79	□□□□□ -0.52
BBS9-213	ENST00000495426	MED1	Q15648	1581 aa	Predicted RBP	11.79	□□□□□ -0.52
BBS9-213	ENST00000495426	UBAP1L	F5GYI3	381 aa		11.78	□□□□□ -0.52
BBS9-213	ENST00000495426	TIAM1	Q13009	1591 aa		11.78	□□□□□ -0.52
BBS9-213	ENST00000495426	NEURL4	Q96JN8	1562 aa		11.78	□□□□□ -0.52
BBS9-213	ENST00000495426	KIAA1107	Q9UPP5	1409 aa		11.77	□□□□□ -0.52
BBS9-213	ENST00000495426	A2ML1	A8K2U0	1454 aa		11.76	□□□□□ -0.53
BBS9-213	ENST00000495426	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.75	□□□□□ -0.53
BBS9-213	ENST00000495426	HAP1	P54257	671 aa	Predicted RBP	11.75	□□□□□ -0.53
BBS9-213	ENST00000495426	CCNB3	Q8WWL7	1395 aa		11.74	□□□□□ -0.53
BBS9-213	ENST00000495426	CPS1	P31327	1500 aa		11.74	□□□□□ -0.53
BBS9-213	ENST00000495426	EHBP1L1	Q8N3D4	1523 aa		11.74	□□□□□ -0.53
BBS9-213	ENST00000495426	GGT6	Q6P531	493 aa		11.73	□□□□□ -0.53
BBS9-213	ENST00000495426	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.73	□□□□□ -0.53
BBS9-213	ENST00000495426	HS6ST3	Q8IZP7	471 aa		11.73	□□□□□ -0.53
BBS9-213	ENST00000495426	FAM135A	Q9P2D6	1515 aa		11.73	□□□□□ -0.53
BBS9-213	ENST00000495426	KDM5D	Q9BY66	1539 aa		11.72	□□□□□ -0.53
BBS9-213	ENST00000495426	VGF	O15240	615 aa	Predicted RBP	11.72	□□□□□ -0.53
BBS9-213	ENST00000495426	PAK3	O75914	559 aa	Predicted RBP	11.72	□□□□□ -0.53
BBS9-213	ENST00000495426	CFAP44	Q96MT7	982 aa		11.72	□□□□□ -0.53
BBS9-213	ENST00000495426	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.72	□□□□□ -0.53
BBS9-213	ENST00000495426	MTUS2	Q5JR59	1369 aa		11.71	□□□□□ -0.53
BBS9-213	ENST00000495426	IQGAP1	P46940	1657 aa		11.7	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms