RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 NCKAP5LQ9HCH0 1330 aa36.83■■■■□ 3.49
COL27A1-208ENST00000494780 PKD2Q13563 968 aa36.81■■■■□ 3.48
COL27A1-208ENST00000494780 KDM5DQ9BY66 1539 aa36.8■■■■□ 3.48
COL27A1-208ENST00000494780 A2ML1A8K2U0 1454 aa36.77■■■■□ 3.48
COL27A1-208ENST00000494780 TCOF1Q13428 1488 aaKnown RBP36.77■■■■□ 3.48
COL27A1-208ENST00000494780 IQSEC2Q5JU85 1478 aa36.76■■■■□ 3.48
COL27A1-208ENST00000494780 KANK4Q5T7N3 995 aaPredicted RBP36.76■■■■□ 3.48
COL27A1-208ENST00000494780 WASHC2CQ9Y4E1 1318 aa36.74■■■■□ 3.47
COL27A1-208ENST00000494780 PZPP20742 1482 aa36.74■■■■□ 3.47
COL27A1-208ENST00000494780 TNRQ92752 1358 aa36.72■■■■□ 3.47
COL27A1-208ENST00000494780 MIA2Q96PC5 1412 aa36.72■■■■□ 3.47
COL27A1-208ENST00000494780 MAST1Q9Y2H9 1570 aa36.72■■■■□ 3.47
COL27A1-208ENST00000494780 DNMT1P26358 1616 aaKnown RBP36.7■■■■□ 3.47
COL27A1-208ENST00000494780 MYOM3Q5VTT5 1437 aa36.7■■■■□ 3.47
COL27A1-208ENST00000494780 FBXO31Q5XUX0 539 aaPredicted RBP36.7■■■■□ 3.47
COL27A1-208ENST00000494780 ZNF335Q9H4Z2 1342 aaPredicted RBP36.65■■■■□ 3.46
COL27A1-208ENST00000494780 RNF17Q9BXT8 1623 aaKnown RBP36.62■■■■□ 3.45
COL27A1-208ENST00000494780 EIF2AK4Q9P2K8 1649 aaKnown RBP36.58■■■■□ 3.45
COL27A1-208ENST00000494780 NLRP1Q9C000 1473 aa36.56■■■■□ 3.44
COL27A1-208ENST00000494780 ZC3H13Q5T200 1668 aaKnown RBP36.54■■■■□ 3.44
COL27A1-208ENST00000494780 ABCC3O15438 1527 aa36.54■■■■□ 3.44
COL27A1-208ENST00000494780 APLP2Q06481 763 aa36.54■■■■□ 3.44
COL27A1-208ENST00000494780 POLR1AO95602 1720 aaPredicted RBP36.52■■■■□ 3.44
COL27A1-208ENST00000494780 THEMISQ8N1K5 641 aaPredicted RBP36.52■■■■□ 3.44
COL27A1-208ENST00000494780 DUOX2Q9NRD8 1548 aa36.5■■■■□ 3.43
COL27A1-208ENST00000494780 NEURL4Q96JN8 1562 aa36.49■■■■□ 3.43
COL27A1-208ENST00000494780 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.48■■■■□ 3.43
COL27A1-208ENST00000494780 UGGT1Q9NYU2 1555 aa36.48■■■■□ 3.43
COL27A1-208ENST00000494780 ANKLE2Q86XL3 938 aa36.47■■■■□ 3.43
COL27A1-208ENST00000494780 MROH1Q8NDA8 1641 aa36.47■■■■□ 3.43
COL27A1-208ENST00000494780 SPATA31D1Q6ZQQ2 1576 aa36.45■■■■□ 3.43
COL27A1-208ENST00000494780 SHANK2Q9UPX8 1470 aa36.45■■■■□ 3.43
COL27A1-208ENST00000494780 PTPN23Q9H3S7 1636 aa36.44■■■■□ 3.42
COL27A1-208ENST00000494780 ABCC5O15440 1437 aa36.43■■■■□ 3.42
COL27A1-208ENST00000494780 UBAP1LF5GYI3 381 aa36.43■■■■□ 3.42
COL27A1-208ENST00000494780 KIF15Q9NS87 1388 aa36.41■■■■□ 3.42
COL27A1-208ENST00000494780 ERVK-7P63135 1459 aa36.41■■■■□ 3.42
COL27A1-208ENST00000494780 CROCC2H7BZ55 1655 aa36.41■■■■□ 3.42
COL27A1-208ENST00000494780 DISP3Q9P2K9 1392 aa36.4■■■■□ 3.42
COL27A1-208ENST00000494780 DEPDC5O75140 1603 aa36.38■■■■□ 3.41
COL27A1-208ENST00000494780 ERBINQ96RT1 1412 aa36.38■■■■□ 3.41
COL27A1-208ENST00000494780 MED14O60244 1454 aa36.37■■■■□ 3.41
COL27A1-208ENST00000494780 CEP152O94986 1710 aa36.37■■■■□ 3.41
COL27A1-208ENST00000494780 CPS1P31327 1500 aa36.37■■■■□ 3.41
COL27A1-208ENST00000494780 FGD6Q6ZV73 1430 aa36.36■■■■□ 3.41
COL27A1-208ENST00000494780 NPHP4O75161 1426 aaPredicted RBP36.35■■■■□ 3.41
COL27A1-208ENST00000494780 DAPK1P53355 1430 aa36.35■■■■□ 3.41
COL27A1-208ENST00000494780 RRP7BPQ9NSQ0 103 aa36.34■■■■□ 3.41
COL27A1-208ENST00000494780 PRDM15P57071 1507 aaPredicted RBP36.34■■■■□ 3.41
COL27A1-208ENST00000494780 ARHGAP31Q2M1Z3 1444 aa36.3■■■■□ 3.4
COL27A1-208ENST00000494780 VWDEQ8N2E2 1590 aa36.29■■■■□ 3.4
COL27A1-208ENST00000494780 IQGAP1P46940 1657 aa36.26■■■■□ 3.39
COL27A1-208ENST00000494780 ANKRD30AQ9BXX3 1397 aa36.24■■■■□ 3.39
COL27A1-208ENST00000494780 CFAP65Q6ZU64 1925 aaKnown RBP36.24■■■■□ 3.39
COL27A1-208ENST00000494780 UBR1Q8IWV7 1749 aa36.22■■■■□ 3.39
COL27A1-208ENST00000494780 KANK1Q14678 1352 aa36.21■■■■□ 3.39
COL27A1-208ENST00000494780 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.21■■■■□ 3.395e-9■□□□□ 10.5
COL27A1-208ENST00000494780 TOM1O60784 492 aa36.19■■■■□ 3.38
COL27A1-208ENST00000494780 CHIC2Q9UKJ5 165 aa36.19■■■■□ 3.38
COL27A1-208ENST00000494780 ILDR2Q71H61 639 aa36.18■■■■□ 3.38
COL27A1-208ENST00000494780 LMTK2Q8IWU2 1503 aa36.13■■■■□ 3.38
COL27A1-208ENST00000494780 SCAF11Q99590 1463 aaKnown RBP36.13■■■■□ 3.37
COL27A1-208ENST00000494780 ARHGAP23Q9P227 1491 aa36.13■■■■□ 3.37
COL27A1-208ENST00000494780 SLIT1O75093 1534 aa36.13■■■■□ 3.37
COL27A1-208ENST00000494780 SCAF1Q9H7N4 1312 aaKnown RBP36.11■■■■□ 3.37
COL27A1-208ENST00000494780 PIP4K2BP78356 416 aa36.1■■■■□ 3.37
COL27A1-208ENST00000494780 ADGRL2O95490 1459 aa36.1■■■■□ 3.37
COL27A1-208ENST00000494780 TXNDC2Q86VQ3 553 aa36.08■■■■□ 3.37
COL27A1-208ENST00000494780 LTKP29376 864 aa36.07■■■■□ 3.36
COL27A1-208ENST00000494780 STRCP1A6NGW2 1772 aa36.06■■■■□ 3.36
COL27A1-208ENST00000494780 PIK3C2BO00750 1634 aa36.05■■■■□ 3.36
COL27A1-208ENST00000494780 FAM50AQ14320 339 aaKnown RBP36.05■■■■□ 3.36
COL27A1-208ENST00000494780 EID1Q9Y6B2 187 aa36.05■■■■□ 3.36
COL27A1-208ENST00000494780 LRRC7Q96NW7 1537 aa36.04■■■■□ 3.36
COL27A1-208ENST00000494780 SYNMO15061 1565 aa36.04■■■■□ 3.36
COL27A1-208ENST00000494780 HSPA1LP34931 641 aa36.04■■■■□ 3.36
COL27A1-208ENST00000494780 SOCS7O14512 581 aa36.01■■■■□ 3.36
COL27A1-208ENST00000494780 STAG3Q9UJ98 1225 aa36.01■■■■□ 3.36
COL27A1-208ENST00000494780 TMEM2Q9UHN6 1383 aa36.01■■■■□ 3.35
COL27A1-208ENST00000494780 KDM5AP29375 1690 aaKnown RBP36■■■■□ 3.35
COL27A1-208ENST00000494780 ALKQ9UM73 1620 aa35.99■■■■□ 3.35
COL27A1-208ENST00000494780 EFCAB6Q5THR3 1501 aa35.98■■■■□ 3.35
COL27A1-208ENST00000494780 IDI1Q13907 227 aa35.98■■■■□ 3.35
COL27A1-208ENST00000494780 NOS1P29475 1434 aa35.96■■■■□ 3.35
COL27A1-208ENST00000494780 ANKRD50Q9ULJ7 1429 aa35.96■■■■□ 3.35
COL27A1-208ENST00000494780 SLC52A1Q9NWF4 448 aa35.89■■■■□ 3.34
COL27A1-208ENST00000494780 RPRD2Q5VT52 1461 aaKnown RBP35.88■■■■□ 3.33
COL27A1-208ENST00000494780 ADGRB3O60242 1522 aa35.86■■■■□ 3.33
COL27A1-208ENST00000494780 MED1Q15648 1581 aaPredicted RBP35.82■■■■□ 3.32
COL27A1-208ENST00000494780 TET3O43151 1660 aa35.81■■■■□ 3.32
COL27A1-208ENST00000494780 ROCK1Q13464 1354 aa35.77■■■■□ 3.32
COL27A1-208ENST00000494780 XIRP1Q702N8 1843 aaKnown RBP35.77■■■■□ 3.32
COL27A1-208ENST00000494780 UNC13BO14795 1591 aa35.76■■■■□ 3.32
COL27A1-208ENST00000494780 KCNA6P17658 529 aa35.76■■■■□ 3.32
COL27A1-208ENST00000494780 SLC26A8Q96RN1 970 aa35.74■■■■□ 3.31
COL27A1-208ENST00000494780 GCC2Q8IWJ2 1684 aa35.74■■■■□ 3.31
COL27A1-208ENST00000494780 TMEM94Q12767 1356 aa35.69■■■■□ 3.3
COL27A1-208ENST00000494780 ZFYVE9O95405 1425 aa35.67■■■■□ 3.3
COL27A1-208ENST00000494780 SENP3Q9H4L4 574 aaPredicted RBP35.67■■■■□ 3.3
COL27A1-208ENST00000494780 HDGFP51858 240 aaKnown RBP35.66■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms