RNA–Protein interactions for RNA: ENST00000493955.1

SMC2-205, Transcript of structural maintenance of chromosomes 2, humanhuman

TSL 1 (best)

Gene SMC2, Length 1,408 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC2-205ENST00000493955 FAM205CA6NFA0 338 aa12.04□□□□□ -0.48
SMC2-205ENST00000493955 FECHP22830 423 aa12.04□□□□□ -0.48
SMC2-205ENST00000493955 PRIM1P49642 420 aaKnown RBP12.04□□□□□ -0.48
SMC2-205ENST00000493955 POTEBQ6S5H4 581 aa12.04□□□□□ -0.48
SMC2-205ENST00000493955 HS3ST6Q96QI5 342 aa12.04□□□□□ -0.48
SMC2-205ENST00000493955 PTGDRQ13258 359 aa12.03□□□□□ -0.48
SMC2-205ENST00000493955 PARP9Q8IXQ6 854 aa12.03□□□□□ -0.48
SMC2-205ENST00000493955 DDRGK1Q96HY6 314 aa12.03□□□□□ -0.48
SMC2-205ENST00000493955 KRTAP3-3Q9BYR6 98 aa12.03□□□□□ -0.48
SMC2-205ENST00000493955 KRTAP3-2Q9BYR7 98 aa12.03□□□□□ -0.48
SMC2-205ENST00000493955 SLC34A2O95436 690 aa12.01□□□□□ -0.49
SMC2-205ENST00000493955 ANO8Q9HCE9 1232 aaPredicted RBP12□□□□□ -0.49
SMC2-205ENST00000493955 TTLL12Q14166 644 aaPredicted RBP11.99□□□□□ -0.49
SMC2-205ENST00000493955 PLEKHG3A1L390 1219 aa11.98□□□□□ -0.49
SMC2-205ENST00000493955 SUPT5HO00267 1087 aaKnown RBP11.97□□□□□ -0.49
SMC2-205ENST00000493955 EN1Q05925 392 aaPredicted RBP11.96□□□□□ -0.49
SMC2-205ENST00000493955 EPAS1Q99814 870 aa11.96□□□□□ -0.49
SMC2-205ENST00000493955 PHF14O94880 888 aa11.95□□□□□ -0.5
SMC2-205ENST00000493955 HOMEZQ8IX15 550 aa11.94□□□□□ -0.5
SMC2-205ENST00000493955 CDHR5Q9HBB8 845 aa11.94□□□□□ -0.5
SMC2-205ENST00000493955 MAP3K7O43318 606 aa11.93□□□□□ -0.5
SMC2-205ENST00000493955 GIGYF2Q6Y7W6 1299 aaKnown RBP11.92□□□□□ -0.5
SMC2-205ENST00000493955 NPDC1Q9NQX5 325 aaPredicted RBP11.91□□□□□ -0.5
SMC2-205ENST00000493955 ZMYND15Q9H091 742 aa11.89□□□□□ -0.51
SMC2-205ENST00000493955 GOPCQ9HD26 462 aa11.89□□□□□ -0.51
SMC2-205ENST00000493955 PCDHGA10Q9Y5H3 936 aa11.89□□□□□ -0.51
SMC2-205ENST00000493955 HOXB3P14651 431 aaPredicted RBP11.88□□□□□ -0.51
SMC2-205ENST00000493955 TYW1BQ6NUM6 668 aa11.88□□□□□ -0.51
SMC2-205ENST00000493955 RBM33Q96EV2 1170 aaKnown RBP11.88□□□□□ -0.51
SMC2-205ENST00000493955 PCDHGA4Q9Y5G9 962 aa11.88□□□□□ -0.51
SMC2-205ENST00000493955 MS4A1P11836 297 aa11.86□□□□□ -0.51
SMC2-205ENST00000493955 TSR1Q2NL82 804 aaKnown RBP11.86□□□□□ -0.51
SMC2-205ENST00000493955 FBXW7Q969H0 707 aa11.86□□□□□ -0.51
SMC2-205ENST00000493955 REPIN1Q9BWE0 567 aaKnown RBP11.86□□□□□ -0.51
SMC2-205ENST00000493955 CLCN1P35523 988 aa11.85□□□□□ -0.51
SMC2-205ENST00000493955 JPH4Q96JJ6 628 aa11.85□□□□□ -0.51
SMC2-205ENST00000493955 ZNF710Q8N1W2 664 aa11.84□□□□□ -0.51
SMC2-205ENST00000493955 RSPH6AQ9H0K4 717 aa11.84□□□□□ -0.51
SMC2-205ENST00000493955 TMUB1Q9BVT8 246 aa11.83□□□□□ -0.52
SMC2-205ENST00000493955 HOXB1P14653 301 aaPredicted RBP11.82□□□□□ -0.52
SMC2-205ENST00000493955 GPCPD1Q9NPB8 672 aa11.82□□□□□ -0.52
SMC2-205ENST00000493955 KDM4FA0A1W2PPD8 638 aa11.81□□□□□ -0.52
SMC2-205ENST00000493955 FLIIQ13045 1269 aa11.81□□□□□ -0.52
SMC2-205ENST00000493955 ERBB3P21860 1342 aa11.8□□□□□ -0.52
SMC2-205ENST00000493955 MDM2Q00987 491 aaPredicted RBP11.8□□□□□ -0.52
SMC2-205ENST00000493955 CERKQ8TCT0 537 aa11.79□□□□□ -0.52
SMC2-205ENST00000493955 PCMTD1Q96MG8 357 aaPredicted RBP11.79□□□□□ -0.52
SMC2-205ENST00000493955 PHOX2BQ99453 314 aa11.79□□□□□ -0.52
SMC2-205ENST00000493955 FOSBP53539 338 aa11.78□□□□□ -0.52
SMC2-205ENST00000493955 DOK7Q18PE1 504 aa11.78□□□□□ -0.52
SMC2-205ENST00000493955 SH3D19Q5HYK7 790 aa11.77□□□□□ -0.52
SMC2-205ENST00000493955 OATP04181 439 aa11.76□□□□□ -0.53
SMC2-205ENST00000493955 METTL3Q86U44 580 aaKnown RBP11.76□□□□□ -0.53
SMC2-205ENST00000493955 SSTR3P32745 418 aaPredicted RBP11.75□□□□□ -0.53
SMC2-205ENST00000493955 C6orf132Q5T0Z8 1188 aa11.75□□□□□ -0.53
SMC2-205ENST00000493955 PADI6Q6TGC4 694 aa11.75□□□□□ -0.53
SMC2-205ENST00000493955 ZDHHC16Q969W1 377 aa11.74□□□□□ -0.53
SMC2-205ENST00000493955 RNF166Q96A37 237 aaPredicted RBP11.74□□□□□ -0.53
SMC2-205ENST00000493955 RBM27Q9P2N5 1060 aaKnown RBP11.74□□□□□ -0.53
SMC2-205ENST00000493955 ONECUT3O60422 494 aaPredicted RBP11.73□□□□□ -0.53
SMC2-205ENST00000493955 FAM161AQ3B820 660 aa11.73□□□□□ -0.53
SMC2-205ENST00000493955 ZNF454Q8N9F8 522 aa11.73□□□□□ -0.53
SMC2-205ENST00000493955 VARS2Q5ST30 1063 aaKnown RBP11.72□□□□□ -0.53
SMC2-205ENST00000493955 FAM217BQ9NTX9 383 aaPredicted RBP11.72□□□□□ -0.53
SMC2-205ENST00000493955 ADGRG1Q9Y653 693 aa11.72□□□□□ -0.53
SMC2-205ENST00000493955 PXYLP1Q8TE99 480 aa11.71□□□□□ -0.53
SMC2-205ENST00000493955 BEGAINQ9BUH8 593 aa11.71□□□□□ -0.53
SMC2-205ENST00000493955 RIMBP2O15034 1052 aa11.7□□□□□ -0.54
SMC2-205ENST00000493955 NUDT7P0C024 238 aa11.69□□□□□ -0.54
SMC2-205ENST00000493955 SKIV2LQ15477 1246 aaKnown RBP11.69□□□□□ -0.54
SMC2-205ENST00000493955 TTC13Q8NBP0 860 aa11.69□□□□□ -0.54
SMC2-205ENST00000493955 NLRP7Q8WX94 980 aa11.69□□□□□ -0.54
SMC2-205ENST00000493955 ADAM33Q9BZ11 813 aa11.68□□□□□ -0.54
SMC2-205ENST00000493955 ZSWIM6Q9HCJ5 1215 aa11.67□□□□□ -0.54
SMC2-205ENST00000493955 MYT1LQ9UL68 1186 aa11.67□□□□□ -0.54
SMC2-205ENST00000493955 ARSIQ5FYB1 569 aa11.66□□□□□ -0.54
SMC2-205ENST00000493955 KHSRPQ92945 711 aaKnown RBP eCLIP11.66□□□□□ -0.54
SMC2-205ENST00000493955 PRSS12P56730 875 aa11.65□□□□□ -0.54
SMC2-205ENST00000493955 RBM46Q8TBY0 533 aaKnown RBP11.64□□□□□ -0.55
SMC2-205ENST00000493955 MCM6Q14566 821 aa11.63□□□□□ -0.55
SMC2-205ENST00000493955 CDCA7LQ96GN5 454 aa11.63□□□□□ -0.55
SMC2-205ENST00000493955 GPR153Q6NV75 609 aa11.62□□□□□ -0.55
SMC2-205ENST00000493955 ZNF687Q8N1G0 1237 aa11.62□□□□□ -0.55
SMC2-205ENST00000493955 C1orf115Q9H7X2 142 aa11.62□□□□□ -0.55
SMC2-205ENST00000493955 ATP1B4Q9UN42 357 aaPredicted RBP11.62□□□□□ -0.55
SMC2-205ENST00000493955 A6NJR5 290 aa11.61□□□□□ -0.55
SMC2-205ENST00000493955 UBTFP17480 764 aaKnown RBP11.61□□□□□ -0.55
SMC2-205ENST00000493955 MYSM1Q5VVJ2 828 aa11.61□□□□□ -0.55
SMC2-205ENST00000493955 PROCA1Q8NCQ7 364 aaPredicted RBP11.6□□□□□ -0.55
SMC2-205ENST00000493955 POLR3EQ9NVU0 708 aa11.6□□□□□ -0.55
SMC2-205ENST00000493955 CLUAP1Q96AJ1 413 aa11.6□□□□□ -0.55
SMC2-205ENST00000493955 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.59□□□□□ -0.55
SMC2-205ENST00000493955 CLK2P49760 499 aaKnown RBP11.59□□□□□ -0.55
SMC2-205ENST00000493955 DIXDC1Q155Q3 683 aa11.59□□□□□ -0.55
SMC2-205ENST00000493955 PPP4R3BQ5MIZ7 849 aa11.59□□□□□ -0.55
SMC2-205ENST00000493955 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.59□□□□□ -0.55
SMC2-205ENST00000493955 ARID3CA6NKF2 412 aa11.58□□□□□ -0.56
SMC2-205ENST00000493955 APBB1O00213 710 aa11.58□□□□□ -0.56
SMC2-205ENST00000493955 PSDA5PKW4 1024 aaPredicted RBP11.57□□□□□ -0.56
SMC2-205ENST00000493955 ARID3AQ99856 593 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms