RNA–Protein interactions for RNA: ENST00000493618.5

ATG4B-223, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 5

Gene ATG4B, Length 899 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-223ENST00000493618 PPP6R1Q9UPN7 881 aa23.04■■□□□ 1.28
ATG4B-223ENST00000493618 MIA2Q96PC5 1412 aa23.04■■□□□ 1.28
ATG4B-223ENST00000493618 CROCC2H7BZ55 1655 aa23.03■■□□□ 1.28
ATG4B-223ENST00000493618 PTPN23Q9H3S7 1636 aa23.03■■□□□ 1.28
ATG4B-223ENST00000493618 PTPRTO14522 1441 aa23.01■■□□□ 1.27
ATG4B-223ENST00000493618 RNF17Q9BXT8 1623 aaKnown RBP23■■□□□ 1.27
ATG4B-223ENST00000493618 NCKAP5LQ9HCH0 1330 aa22.99■■□□□ 1.27
ATG4B-223ENST00000493618 WASHC2CQ9Y4E1 1318 aa22.98■■□□□ 1.27
ATG4B-223ENST00000493618 EIF2AK4Q9P2K8 1649 aaKnown RBP22.97■■□□□ 1.27
ATG4B-223ENST00000493618 CEP152O94986 1710 aa22.97■■□□□ 1.27
ATG4B-223ENST00000493618 FBXO31Q5XUX0 539 aaPredicted RBP22.97■■□□□ 1.27
ATG4B-223ENST00000493618 FAM135AQ9P2D6 1515 aa22.97■■□□□ 1.27
ATG4B-223ENST00000493618 DNMT1P26358 1616 aaKnown RBP22.97■■□□□ 1.27
ATG4B-223ENST00000493618 PZPP20742 1482 aa22.96■■□□□ 1.27
ATG4B-223ENST00000493618 CFAP65Q6ZU64 1925 aaKnown RBP22.95■■□□□ 1.26
ATG4B-223ENST00000493618 ZC3H13Q5T200 1668 aaKnown RBP22.94■■□□□ 1.26
ATG4B-223ENST00000493618 A2ML1A8K2U0 1454 aa22.94■■□□□ 1.26
ATG4B-223ENST00000493618 MROH1Q8NDA8 1641 aa22.93■■□□□ 1.26
ATG4B-223ENST00000493618 TNRQ92752 1358 aa22.93■■□□□ 1.26
ATG4B-223ENST00000493618 POLR1AO95602 1720 aaPredicted RBP22.92■■□□□ 1.26
ATG4B-223ENST00000493618 LTBP4Q8N2S1 1624 aa22.92■■□□□ 1.26
ATG4B-223ENST00000493618 ABCC3O15438 1527 aa22.92■■□□□ 1.26
ATG4B-223ENST00000493618 DUOX2Q9NRD8 1548 aa22.92■■□□□ 1.26
ATG4B-223ENST00000493618 PLA2R1Q13018 1463 aa22.92■■□□□ 1.26
ATG4B-223ENST00000493618 ABCC5O15440 1437 aa22.91■■□□□ 1.26
ATG4B-223ENST00000493618 FGD6Q6ZV73 1430 aa22.91■■□□□ 1.26
ATG4B-223ENST00000493618 TCOF1Q13428 1488 aaKnown RBP22.89■■□□□ 1.25
ATG4B-223ENST00000493618 SHANK2Q9UPX8 1470 aa22.89■■□□□ 1.25
ATG4B-223ENST00000493618 DAPK1P53355 1430 aa22.89■■□□□ 1.25
ATG4B-223ENST00000493618 RRP7BPQ9NSQ0 103 aa22.87■■□□□ 1.25
ATG4B-223ENST00000493618 KIF15Q9NS87 1388 aa22.86■■□□□ 1.25
ATG4B-223ENST00000493618 PKD2Q13563 968 aa22.85■■□□□ 1.25
ATG4B-223ENST00000493618 CHIC2Q9UKJ5 165 aa22.83■■□□□ 1.25
ATG4B-223ENST00000493618 ZNF335Q9H4Z2 1342 aaPredicted RBP22.82■■□□□ 1.24
ATG4B-223ENST00000493618 NEURL4Q96JN8 1562 aa22.82■■□□□ 1.24
ATG4B-223ENST00000493618 SPATA31D1Q6ZQQ2 1576 aa22.81■■□□□ 1.24
ATG4B-223ENST00000493618 ERBINQ96RT1 1412 aa22.81■■□□□ 1.24
ATG4B-223ENST00000493618 UGGT1Q9NYU2 1555 aa22.8■■□□□ 1.24
ATG4B-223ENST00000493618 NLRP1Q9C000 1473 aa22.8■■□□□ 1.24
ATG4B-223ENST00000493618 DEPDC5O75140 1603 aa22.8■■□□□ 1.24
ATG4B-223ENST00000493618 PRDM15P57071 1507 aaPredicted RBP22.8■■□□□ 1.24
ATG4B-223ENST00000493618 ERVK-7P63135 1459 aa22.79■■□□□ 1.24
ATG4B-223ENST00000493618 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.78■■□□□ 1.245e-9■■■■□ 24.7
ATG4B-223ENST00000493618 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.78■■□□□ 1.241e-13■□□□□ 10.9
ATG4B-223ENST00000493618 FAM50AQ14320 339 aaKnown RBP22.76■■□□□ 1.23
ATG4B-223ENST00000493618 UBR1Q8IWV7 1749 aa22.75■■□□□ 1.23
ATG4B-223ENST00000493618 ANKRD30AQ9BXX3 1397 aa22.75■■□□□ 1.23
ATG4B-223ENST00000493618 IQSEC2Q5JU85 1478 aa22.74■■□□□ 1.23
ATG4B-223ENST00000493618 THEMISQ8N1K5 641 aaPredicted RBP22.73■■□□□ 1.23
ATG4B-223ENST00000493618 IQGAP1P46940 1657 aa22.71■■□□□ 1.23
ATG4B-223ENST00000493618 ANKLE2Q86XL3 938 aa22.71■■□□□ 1.23
ATG4B-223ENST00000493618 ADGRL2O95490 1459 aa22.69■■□□□ 1.22
ATG4B-223ENST00000493618 KANK1Q14678 1352 aa22.68■■□□□ 1.22
ATG4B-223ENST00000493618 PIK3C2BO00750 1634 aa22.68■■□□□ 1.22
ATG4B-223ENST00000493618 NPHP4O75161 1426 aaPredicted RBP22.67■■□□□ 1.22
ATG4B-223ENST00000493618 PPARGC1BQ86YN6 1023 aaKnown RBP22.67■■□□□ 1.22
ATG4B-223ENST00000493618 VWDEQ8N2E2 1590 aa22.67■■□□□ 1.22
ATG4B-223ENST00000493618 ARHGAP31Q2M1Z3 1444 aa22.66■■□□□ 1.22
ATG4B-223ENST00000493618 MED14O60244 1454 aa22.65■■□□□ 1.22
ATG4B-223ENST00000493618 DISP3Q9P2K9 1392 aa22.63■■□□□ 1.21
ATG4B-223ENST00000493618 STRCP1A6NGW2 1772 aa22.63■■□□□ 1.21
ATG4B-223ENST00000493618 LMTK2Q8IWU2 1503 aa22.63■■□□□ 1.21
ATG4B-223ENST00000493618 UBAP1LF5GYI3 381 aa22.62■■□□□ 1.21
ATG4B-223ENST00000493618 CPS1P31327 1500 aa22.61■■□□□ 1.21
ATG4B-223ENST00000493618 EFCAB6Q5THR3 1501 aa22.61■■□□□ 1.21
ATG4B-223ENST00000493618 SYNMO15061 1565 aa22.6■■□□□ 1.21
ATG4B-223ENST00000493618 ANKRD50Q9ULJ7 1429 aa22.59■■□□□ 1.21
ATG4B-223ENST00000493618 ILDR2Q71H61 639 aa22.59■■□□□ 1.21
ATG4B-223ENST00000493618 SCAF11Q99590 1463 aaKnown RBP22.57■■□□□ 1.2
ATG4B-223ENST00000493618 SLIT1O75093 1534 aa22.57■■□□□ 1.2
ATG4B-223ENST00000493618 ARHGAP23Q9P227 1491 aa22.56■■□□□ 1.2
ATG4B-223ENST00000493618 TET3O43151 1660 aa22.55■■□□□ 1.2
ATG4B-223ENST00000493618 MYO5BQ9ULV0 1848 aa22.55■■□□□ 1.2
ATG4B-223ENST00000493618 LTKP29376 864 aa22.55■■□□□ 1.2
ATG4B-223ENST00000493618 KDM5AP29375 1690 aaKnown RBP22.55■■□□□ 1.2
ATG4B-223ENST00000493618 GCC2Q8IWJ2 1684 aa22.55■■□□□ 1.2
ATG4B-223ENST00000493618 UNC13BO14795 1591 aa22.55■■□□□ 1.2
ATG4B-223ENST00000493618 ITGAEP38570 1179 aa22.54■■□□□ 1.2
ATG4B-223ENST00000493618 TXNDC2Q86VQ3 553 aa22.53■■□□□ 1.2
ATG4B-223ENST00000493618 STAG3Q9UJ98 1225 aa22.53■■□□□ 1.2
ATG4B-223ENST00000493618 NOS1P29475 1434 aa22.51■■□□□ 1.19
ATG4B-223ENST00000493618 IDI1Q13907 227 aa22.51■■□□□ 1.19
ATG4B-223ENST00000493618 SCAF1Q9H7N4 1312 aaKnown RBP22.51■■□□□ 1.19
ATG4B-223ENST00000493618 ADGRB3O60242 1522 aa22.5■■□□□ 1.19
ATG4B-223ENST00000493618 E9PCH4 1651 aa22.49■■□□□ 1.19
ATG4B-223ENST00000493618 PIP4K2BP78356 416 aa22.49■■□□□ 1.19
ATG4B-223ENST00000493618 TMEM2Q9UHN6 1383 aa22.49■■□□□ 1.19
ATG4B-223ENST00000493618 EID1Q9Y6B2 187 aa22.48■■□□□ 1.19
ATG4B-223ENST00000493618 LRRC7Q96NW7 1537 aa22.47■■□□□ 1.19
ATG4B-223ENST00000493618 XIRP1Q702N8 1843 aaKnown RBP22.47■■□□□ 1.19
ATG4B-223ENST00000493618 ROCK1Q13464 1354 aa22.47■■□□□ 1.19
ATG4B-223ENST00000493618 RPRD2Q5VT52 1461 aaKnown RBP22.46■■□□□ 1.19
ATG4B-223ENST00000493618 IQGAP3Q86VI3 1631 aa22.46■■□□□ 1.19
ATG4B-223ENST00000493618 ALKQ9UM73 1620 aa22.46■■□□□ 1.19
ATG4B-223ENST00000493618 SOCS7O14512 581 aa22.45■■□□□ 1.18
ATG4B-223ENST00000493618 TOM1O60784 492 aa22.44■■□□□ 1.18
ATG4B-223ENST00000493618 SENP3Q9H4L4 574 aaPredicted RBP22.41■■□□□ 1.18
ATG4B-223ENST00000493618 TMEM131LA2VDJ0 1609 aa22.4■■□□□ 1.18
ATG4B-223ENST00000493618 SLC52A1Q9NWF4 448 aa22.4■■□□□ 1.18
ATG4B-223ENST00000493618 HSPA1LP34931 641 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms