RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 L1TD1Q5T7N2 865 aaKnown RBP15.17■□□□□ 0.02
HDAC4-210ENST00000493582 DAPK1P53355 1430 aa15.16■□□□□ 0.02
HDAC4-210ENST00000493582 USP19O94966 1318 aa15.16■□□□□ 0.02
HDAC4-210ENST00000493582 SEC24BO95487 1268 aa15.16■□□□□ 0.02
HDAC4-210ENST00000493582 XRCC6P12956 609 aaKnown RBP eCLIP15.15■□□□□ 0.02
HDAC4-210ENST00000493582 ABCC5O15440 1437 aa15.15■□□□□ 0.02
HDAC4-210ENST00000493582 ROCK1Q13464 1354 aa15.15■□□□□ 0.02
HDAC4-210ENST00000493582 PARD3Q8TEW0 1356 aa15.15■□□□□ 0.02
HDAC4-210ENST00000493582 PANK2Q9BZ23 570 aa15.14■□□□□ 0.01
HDAC4-210ENST00000493582 KIF21AQ7Z4S6 1674 aa15.14■□□□□ 0.01
HDAC4-210ENST00000493582 PZPP20742 1482 aa15.14■□□□□ 0.01
HDAC4-210ENST00000493582 HSP90AA1P07900 732 aaKnown RBP15.14■□□□□ 0.01
HDAC4-210ENST00000493582 GZF1Q9H116 711 aaPredicted RBP15.13■□□□□ 0.01
HDAC4-210ENST00000493582 PER1O15534 1290 aaPredicted RBP15.13■□□□□ 0.01
HDAC4-210ENST00000493582 KIF14Q15058 1648 aa15.11■□□□□ 0.01
HDAC4-210ENST00000493582 CDK13Q14004 1512 aaKnown RBP15.11■□□□□ 0.01
HDAC4-210ENST00000493582 CLCN1P35523 988 aa15.11■□□□□ 0.01
HDAC4-210ENST00000493582 ADAMTS8Q9UP79 889 aa15.11■□□□□ 0.01
HDAC4-210ENST00000493582 KIAA1107Q9UPP5 1409 aa15.11■□□□□ 0.01
HDAC4-210ENST00000493582 RRP9O43818 475 aaKnown RBP15.1■□□□□ 0.01
HDAC4-210ENST00000493582 DUSP27Q5VZP5 1158 aa15.1■□□□□ 0.01
HDAC4-210ENST00000493582 GOLGA6L3A6NEY3 463 aa15.1■□□□□ 0.01
HDAC4-210ENST00000493582 BECN1Q14457 450 aa15.1■□□□□ 0.01
HDAC4-210ENST00000493582 RALGAPBQ86X10 1494 aa15.09■□□□□ 0.01
HDAC4-210ENST00000493582 EPRSP07814 1512 aaKnown RBP15.09■□□□□ 0.01
HDAC4-210ENST00000493582 IGHDP01880 384 aa15.08■□□□□ 0.01
HDAC4-210ENST00000493582 TDRD9Q8NDG6 1382 aaKnown RBP15.08■□□□□ 0
HDAC4-210ENST00000493582 BLMP54132 1417 aaPredicted RBP15.08■□□□□ 0
HDAC4-210ENST00000493582 SPRYD3Q8NCJ5 442 aa15.08■□□□□ 0
HDAC4-210ENST00000493582 ANTXR1Q9H6X2 564 aa15.08■□□□□ 0
HDAC4-210ENST00000493582 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.06■□□□□ 0
HDAC4-210ENST00000493582 UHRF1BP1Q6BDS2 1440 aa15.06■□□□□ 0
HDAC4-210ENST00000493582 PLEKHH1Q9ULM0 1364 aa15.06■□□□□ 0
HDAC4-210ENST00000493582 NESP48681 1621 aa15.05■□□□□ -0
HDAC4-210ENST00000493582 FSD2A1L4K1 749 aa15.05■□□□□ -0
HDAC4-210ENST00000493582 PANK3Q9H999 370 aa15.04■□□□□ -0
HDAC4-210ENST00000493582 ZMYM4Q5VZL5 1548 aa15.04■□□□□ -0
HDAC4-210ENST00000493582 BCAR3O75815 825 aa15.04■□□□□ -0
HDAC4-210ENST00000493582 GOLGA2Q08379 1002 aa15.04■□□□□ -0
HDAC4-210ENST00000493582 LAMC3Q9Y6N6 1575 aa15.03■□□□□ -0
HDAC4-210ENST00000493582 ZNF777Q9ULD5 760 aaPredicted RBP15.03■□□□□ -0
HDAC4-210ENST00000493582 DNMT1P26358 1616 aaKnown RBP15.02■□□□□ -0
HDAC4-210ENST00000493582 TBC1D2Q9BYX2 928 aa15.02□□□□□ -0.01
HDAC4-210ENST00000493582 E9PCH4 1651 aa15.02□□□□□ -0.01
HDAC4-210ENST00000493582 NBPF1Q3BBV0 1214 aa15.01□□□□□ -0.01
HDAC4-210ENST00000493582 MCM4P33991 863 aa15.01□□□□□ -0.01
HDAC4-210ENST00000493582 GAPVD1Q14C86 1478 aa15□□□□□ -0.01
HDAC4-210ENST00000493582 SPINK5Q9NQ38 1064 aaPredicted RBP14.99□□□□□ -0.01
HDAC4-210ENST00000493582 URB2Q14146 1524 aaKnown RBP14.99□□□□□ -0.01
HDAC4-210ENST00000493582 WDR43Q15061 677 aaKnown RBP eCLIP14.99□□□□□ -0.01
HDAC4-210ENST00000493582 ERBB4Q15303 1308 aa14.99□□□□□ -0.01
HDAC4-210ENST00000493582 PLEKHH2Q8IVE3 1493 aa14.99□□□□□ -0.01
HDAC4-210ENST00000493582 KIAA0586Q9BVV6 1533 aa14.98□□□□□ -0.01
HDAC4-210ENST00000493582 SLFN5Q08AF3 891 aa14.98□□□□□ -0.01
HDAC4-210ENST00000493582 NUP155O75694 1391 aa14.98□□□□□ -0.01
HDAC4-210ENST00000493582 ESPNB1AK53 854 aa14.98□□□□□ -0.01
HDAC4-210ENST00000493582 TRAK2O60296 914 aa14.98□□□□□ -0.01
HDAC4-210ENST00000493582 INSRP06213 1382 aa14.98□□□□□ -0.01
HDAC4-210ENST00000493582 MYH16Q9H6N6 1097 aa14.97□□□□□ -0.01
HDAC4-210ENST00000493582 ZNF608Q9ULD9 1512 aaPredicted RBP14.97□□□□□ -0.01
HDAC4-210ENST00000493582 ZNF521Q96K83 1311 aa14.97□□□□□ -0.01
HDAC4-210ENST00000493582 CFDP1Q9UEE9 299 aaPredicted RBP14.97□□□□□ -0.01
HDAC4-210ENST00000493582 WDR62O43379 1518 aa14.96□□□□□ -0.01
HDAC4-210ENST00000493582 CCDC146Q8IYE0 955 aa14.96□□□□□ -0.01
HDAC4-210ENST00000493582 MRE11P49959 708 aa14.96□□□□□ -0.01
HDAC4-210ENST00000493582 RGL3Q3MIN7 710 aa14.96□□□□□ -0.01
HDAC4-210ENST00000493582 DISP3Q9P2K9 1392 aa14.96□□□□□ -0.01
HDAC4-210ENST00000493582 NLRP1Q9C000 1473 aa14.96□□□□□ -0.01
HDAC4-210ENST00000493582 UPF2Q9HAU5 1272 aaKnown RBP14.95□□□□□ -0.02
HDAC4-210ENST00000493582 EIF3AQ14152 1382 aaKnown RBP14.95□□□□□ -0.02
HDAC4-210ENST00000493582 MAPK8IP3Q9UPT6 1336 aa14.95□□□□□ -0.02
HDAC4-210ENST00000493582 TBC1D32Q96NH3 1257 aa14.95□□□□□ -0.02
HDAC4-210ENST00000493582 COG6Q9Y2V7 657 aa14.95□□□□□ -0.02
HDAC4-210ENST00000493582 GRPEL1Q9HAV7 217 aa14.94□□□□□ -0.02
HDAC4-210ENST00000493582 PANK1Q8TE04 598 aa14.94□□□□□ -0.02
HDAC4-210ENST00000493582 TESK2Q96S53 571 aa14.93□□□□□ -0.02
HDAC4-210ENST00000493582 PPP2R1AP30153 589 aa14.93□□□□□ -0.02
HDAC4-210ENST00000493582 CLUAP1Q96AJ1 413 aa14.93□□□□□ -0.02
HDAC4-210ENST00000493582 ANKRD50Q9ULJ7 1429 aa14.92□□□□□ -0.02
HDAC4-210ENST00000493582 ARHGEF12Q9NZN5 1544 aa14.92□□□□□ -0.02
HDAC4-210ENST00000493582 IQGAP2Q13576 1575 aa14.91□□□□□ -0.02
HDAC4-210ENST00000493582 TRMT2AQ8IZ69 625 aaKnown RBP14.91□□□□□ -0.02
HDAC4-210ENST00000493582 APAF1O14727 1248 aa14.91□□□□□ -0.02
HDAC4-210ENST00000493582 TRIM44Q96DX7 344 aaPredicted RBP14.91□□□□□ -0.02
HDAC4-210ENST00000493582 DMRT2Q9Y5R5 561 aa14.9□□□□□ -0.02
HDAC4-210ENST00000493582 CANXP27824 592 aaKnown RBP14.9□□□□□ -0.02
HDAC4-210ENST00000493582 CAMSAP2Q08AD1 1489 aa14.9□□□□□ -0.02
HDAC4-210ENST00000493582 ANKRD30AQ9BXX3 1397 aa14.89□□□□□ -0.03
HDAC4-210ENST00000493582 DNAJC5BQ9UF47 199 aa14.89□□□□□ -0.03
HDAC4-210ENST00000493582 PODXL2Q9NZ53 605 aa14.89□□□□□ -0.03
HDAC4-210ENST00000493582 CHMP5Q9NZZ3 219 aa14.89□□□□□ -0.03
HDAC4-210ENST00000493582 CGNL1Q0VF96 1302 aa14.89□□□□□ -0.03
HDAC4-210ENST00000493582 PDCL3Q9H2J4 239 aa14.88□□□□□ -0.03
HDAC4-210ENST00000493582 VIRMAQ69YN4 1812 aaKnown RBP14.88□□□□□ -0.03
HDAC4-210ENST00000493582 KNSTRNQ9Y448 316 aa14.87□□□□□ -0.03
HDAC4-210ENST00000493582 ADGBQ8N7X0 1667 aa14.87□□□□□ -0.03
HDAC4-210ENST00000493582 NKTRP30414 1462 aaKnown RBP14.87□□□□□ -0.03
HDAC4-210ENST00000493582 PLEKHG5O94827 1062 aa14.87□□□□□ -0.03
HDAC4-210ENST00000493582 TMF1P82094 1093 aa14.87□□□□□ -0.03
HDAC4-210ENST00000493582 GAS2L3Q86XJ1 694 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms