RNA–Protein interactions for RNA: ENST00000493348.1

TM4SF1-204, Transcript of transmembrane 4 L six family member 1, humanhuman

TSL 2

Gene TM4SF1, Length 976 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1-204ENST00000493348 ADAMTSL3P82987 1691 aa12.29□□□□□ -0.44
TM4SF1-204ENST00000493348 SIGLEC1Q9BZZ2 1709 aa12.28□□□□□ -0.44
TM4SF1-204ENST00000493348 EIF2AK4Q9P2K8 1649 aaKnown RBP12.27□□□□□ -0.44
TM4SF1-204ENST00000493348 ERBINQ96RT1 1412 aa12.25□□□□□ -0.45
TM4SF1-204ENST00000493348 CNTLNQ9NXG0 1405 aa12.25□□□□□ -0.45
TM4SF1-204ENST00000493348 ADGRL2O95490 1459 aa12.25□□□□□ -0.45
TM4SF1-204ENST00000493348 KANK1Q14678 1352 aa12.24□□□□□ -0.45
TM4SF1-204ENST00000493348 NCOA1Q15788 1441 aa12.24□□□□□ -0.45
TM4SF1-204ENST00000493348 CLTCQ00610 1675 aaKnown RBP12.23□□□□□ -0.45
TM4SF1-204ENST00000493348 ROCK1Q13464 1354 aa12.23□□□□□ -0.45
TM4SF1-204ENST00000493348 WASHC2CQ9Y4E1 1318 aa12.23□□□□□ -0.45
TM4SF1-204ENST00000493348 PTPRMP28827 1452 aa12.22□□□□□ -0.45
TM4SF1-204ENST00000493348 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.22□□□□□ -0.45
TM4SF1-204ENST00000493348 ANKRD50Q9ULJ7 1429 aa12.21□□□□□ -0.45
TM4SF1-204ENST00000493348 MROH2AA6NES4 1674 aa12.21□□□□□ -0.45
TM4SF1-204ENST00000493348 RNF17Q9BXT8 1623 aaKnown RBP12.21□□□□□ -0.46
TM4SF1-204ENST00000493348 FAM135AQ9P2D6 1515 aa12.21□□□□□ -0.46
TM4SF1-204ENST00000493348 ZC3H13Q5T200 1668 aaKnown RBP12.2□□□□□ -0.46
TM4SF1-204ENST00000493348 KDM5DQ9BY66 1539 aa12.2□□□□□ -0.46
TM4SF1-204ENST00000493348 SETD1BQ9UPS6 1966 aaKnown RBP12.19□□□□□ -0.46
TM4SF1-204ENST00000493348 PTPRKQ15262 1439 aa12.19□□□□□ -0.46
TM4SF1-204ENST00000493348 C3P01024 1663 aa12.18□□□□□ -0.46
TM4SF1-204ENST00000493348 CFAP65Q6ZU64 1925 aaKnown RBP12.17□□□□□ -0.46
TM4SF1-204ENST00000493348 CEP152O94986 1710 aa12.17□□□□□ -0.46
TM4SF1-204ENST00000493348 GCC2Q8IWJ2 1684 aa12.17□□□□□ -0.46
TM4SF1-204ENST00000493348 ZMYM3Q14202 1370 aa12.17□□□□□ -0.46
TM4SF1-204ENST00000493348 CEBPAP49715 358 aaPredicted RBP12.16□□□□□ -0.46
TM4SF1-204ENST00000493348 DEPDC5O75140 1603 aa12.15□□□□□ -0.46
TM4SF1-204ENST00000493348 PRDM15P57071 1507 aaPredicted RBP12.15□□□□□ -0.46
TM4SF1-204ENST00000493348 TRIM52Q96A61 297 aa12.14□□□□□ -0.47
TM4SF1-204ENST00000493348 PREX1Q8TCU6 1659 aa12.13□□□□□ -0.47
TM4SF1-204ENST00000493348 ABCC3O15438 1527 aa12.13□□□□□ -0.47
TM4SF1-204ENST00000493348 CAMSAP1Q5T5Y3 1602 aa12.13□□□□□ -0.47
TM4SF1-204ENST00000493348 ACIN1Q9UKV3 1341 aaKnown RBP12.12□□□□□ -0.47
TM4SF1-204ENST00000493348 HFM1A2PYH4 1435 aa12.12□□□□□ -0.47
TM4SF1-204ENST00000493348 NAIPQ13075 1403 aa12.11□□□□□ -0.47
TM4SF1-204ENST00000493348 UHRF1BP1Q6BDS2 1440 aa12.11□□□□□ -0.47
TM4SF1-204ENST00000493348 UNC13BO14795 1591 aa12.11□□□□□ -0.47
TM4SF1-204ENST00000493348 NUP155O75694 1391 aa12.11□□□□□ -0.47
TM4SF1-204ENST00000493348 MROH1Q8NDA8 1641 aa12.11□□□□□ -0.47
TM4SF1-204ENST00000493348 NPATQ14207 1427 aa12.11□□□□□ -0.47
TM4SF1-204ENST00000493348 PZPP20742 1482 aa12.1□□□□□ -0.47
TM4SF1-204ENST00000493348 MAPK8IP2Q13387 824 aaPredicted RBP12.1□□□□□ -0.47
TM4SF1-204ENST00000493348 TET3O43151 1660 aa12.09□□□□□ -0.47
TM4SF1-204ENST00000493348 IQGAP3Q86VI3 1631 aa12.08□□□□□ -0.48
TM4SF1-204ENST00000493348 SETD5Q9C0A6 1442 aa12.08□□□□□ -0.48
TM4SF1-204ENST00000493348 TNRQ92752 1358 aa12.07□□□□□ -0.48
TM4SF1-204ENST00000493348 LMTK2Q8IWU2 1503 aa12.07□□□□□ -0.48
TM4SF1-204ENST00000493348 VWDEQ8N2E2 1590 aa12.06□□□□□ -0.48
TM4SF1-204ENST00000493348 ARHGAP31Q2M1Z3 1444 aa12.06□□□□□ -0.48
TM4SF1-204ENST00000493348 STAG3Q9UJ98 1225 aa12.06□□□□□ -0.48
TM4SF1-204ENST00000493348 EFCAB6Q5THR3 1501 aa12.06□□□□□ -0.48
TM4SF1-204ENST00000493348 MYO3AQ8NEV4 1616 aa12.05□□□□□ -0.48
TM4SF1-204ENST00000493348 TRIM26Q12899 539 aaPredicted RBP12.05□□□□□ -0.48
TM4SF1-204ENST00000493348 FBXO31Q5XUX0 539 aaPredicted RBP12.05□□□□□ -0.48
TM4SF1-204ENST00000493348 DMRT2Q9Y5R5 561 aa12.05□□□□□ -0.48
TM4SF1-204ENST00000493348 ERVK-7P63135 1459 aa12.04□□□□□ -0.48
TM4SF1-204ENST00000493348 RPRD2Q5VT52 1461 aaKnown RBP12.04□□□□□ -0.48
TM4SF1-204ENST00000493348 SLC4A1APQ9BWU0 796 aaKnown RBP12.04□□□□□ -0.48
TM4SF1-204ENST00000493348 SPATA31D1Q6ZQQ2 1576 aa12.03□□□□□ -0.48
TM4SF1-204ENST00000493348 LMTK3Q96Q04 1460 aa12.02□□□□□ -0.48
TM4SF1-204ENST00000493348 NLRP1Q9C000 1473 aa12.02□□□□□ -0.48
TM4SF1-204ENST00000493348 CEP170BQ9Y4F5 1589 aaPredicted RBP12.02□□□□□ -0.49
TM4SF1-204ENST00000493348 E9PCH4 1651 aa12.02□□□□□ -0.49
TM4SF1-204ENST00000493348 ZNF142P52746 1687 aaPredicted RBP12.02□□□□□ -0.49
TM4SF1-204ENST00000493348 A2ML1A8K2U0 1454 aa12.02□□□□□ -0.49
TM4SF1-204ENST00000493348 HSPA2P54652 639 aa12.01□□□□□ -0.49
TM4SF1-204ENST00000493348 RAB3GAP2Q9H2M9 1393 aa12.01□□□□□ -0.49
TM4SF1-204ENST00000493348 THEMISQ8N1K5 641 aaPredicted RBP12□□□□□ -0.49
TM4SF1-204ENST00000493348 SLC52A1Q9NWF4 448 aa12□□□□□ -0.49
TM4SF1-204ENST00000493348 UGGT1Q9NYU2 1555 aa12□□□□□ -0.49
TM4SF1-204ENST00000493348 SPHKAPQ2M3C7 1700 aa12□□□□□ -0.49
TM4SF1-204ENST00000493348 CHGAP10645 457 aaKnown RBP11.99□□□□□ -0.49
TM4SF1-204ENST00000493348 PKD2Q13563 968 aa11.99□□□□□ -0.49
TM4SF1-204ENST00000493348 HRCP23327 699 aa11.97□□□□□ -0.49
TM4SF1-204ENST00000493348 NOS1P29475 1434 aa11.96□□□□□ -0.49
TM4SF1-204ENST00000493348 HDGFP51858 240 aaKnown RBP11.96□□□□□ -0.49
TM4SF1-204ENST00000493348 MPHOSPH9Q99550 1183 aa11.96□□□□□ -0.49
TM4SF1-204ENST00000493348 PIK3C2BO00750 1634 aa11.96□□□□□ -0.5
TM4SF1-204ENST00000493348 KIF1BO60333 1816 aa11.95□□□□□ -0.5
TM4SF1-204ENST00000493348 UBR1Q8IWV7 1749 aa11.95□□□□□ -0.5
TM4SF1-204ENST00000493348 ANKLE2Q86XL3 938 aa11.95□□□□□ -0.5
TM4SF1-204ENST00000493348 EID1Q9Y6B2 187 aa11.95□□□□□ -0.5
TM4SF1-204ENST00000493348 SYNMO15061 1565 aa11.95□□□□□ -0.5
TM4SF1-204ENST00000493348 POLR1AO95602 1720 aaPredicted RBP11.94□□□□□ -0.5
TM4SF1-204ENST00000493348 KDM5AP29375 1690 aaKnown RBP11.94□□□□□ -0.5
TM4SF1-204ENST00000493348 SCAF1Q9H7N4 1312 aaKnown RBP11.94□□□□□ -0.5
TM4SF1-204ENST00000493348 IDI1Q13907 227 aa11.94□□□□□ -0.5
TM4SF1-204ENST00000493348 ZNF326Q5BKZ1 582 aaKnown RBP11.93□□□□□ -0.5
TM4SF1-204ENST00000493348 BCANQ96GW7 911 aa11.93□□□□□ -0.5
TM4SF1-204ENST00000493348 PLA2R1Q13018 1463 aa11.93□□□□□ -0.5
TM4SF1-204ENST00000493348 MYO5BQ9ULV0 1848 aa11.93□□□□□ -0.5
TM4SF1-204ENST00000493348 ADGRB3O60242 1522 aa11.92□□□□□ -0.5
TM4SF1-204ENST00000493348 PPP1R15AO75807 674 aaPredicted RBP11.92□□□□□ -0.5
TM4SF1-204ENST00000493348 TRPM2O94759 1503 aa11.91□□□□□ -0.5
TM4SF1-204ENST00000493348 CCDC144AA2RUR9 1427 aa11.91□□□□□ -0.5
TM4SF1-204ENST00000493348 NCKAP5LQ9HCH0 1330 aa11.9□□□□□ -0.5
TM4SF1-204ENST00000493348 STRCQ7RTU9 1775 aa11.9□□□□□ -0.5
TM4SF1-204ENST00000493348 PTPRTO14522 1441 aa11.9□□□□□ -0.5
TM4SF1-204ENST00000493348 TXNDC2Q86VQ3 553 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms