RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SPAG9O60271 1321 aaKnown RBP29.49■■■□□ 2.31
CCDC88B-208ENST00000492980 CCDC144AA2RUR9 1427 aa29.48■■■□□ 2.31
CCDC88B-208ENST00000492980 USP47Q96K76 1375 aa29.47■■■□□ 2.31
CCDC88B-208ENST00000492980 INO80Q9ULG1 1556 aaPredicted RBP29.46■■■□□ 2.31
CCDC88B-208ENST00000492980 AFAP1Q8N556 730 aa29.46■■■□□ 2.31
CCDC88B-208ENST00000492980 KIF7Q2M1P5 1343 aa29.44■■■□□ 2.3
CCDC88B-208ENST00000492980 ATP7AQ04656 1500 aa29.43■■■□□ 2.3
CCDC88B-208ENST00000492980 ATP10AO60312 1499 aa29.42■■■□□ 2.3
CCDC88B-208ENST00000492980 BCORL1Q5H9F3 1711 aa29.42■■■□□ 2.3
CCDC88B-208ENST00000492980 ADGRL1O94910 1474 aa29.42■■■□□ 2.3
CCDC88B-208ENST00000492980 DCAF11Q8TEB1 546 aa29.4■■■□□ 2.3
CCDC88B-208ENST00000492980 DEPDC5O75140 1603 aa29.39■■■□□ 2.3
CCDC88B-208ENST00000492980 SCAPERQ9BY12 1400 aa29.38■■■□□ 2.29
CCDC88B-208ENST00000492980 KDM2AQ9Y2K7 1162 aa29.38■■■□□ 2.29
CCDC88B-208ENST00000492980 NPM1P06748 294 aaKnown RBP eCLIP29.35■■■□□ 2.29
CCDC88B-208ENST00000492980 TRPM1Q7Z4N2 1603 aa29.34■■■□□ 2.29
CCDC88B-208ENST00000492980 E9PCH4 1651 aa29.33■■■□□ 2.29
CCDC88B-208ENST00000492980 A2MP01023 1474 aa29.33■■■□□ 2.29
CCDC88B-208ENST00000492980 PRAG1Q86YV5 1406 aa29.33■■■□□ 2.29
CCDC88B-208ENST00000492980 CARD11Q9BXL7 1154 aa29.32■■■□□ 2.28
CCDC88B-208ENST00000492980 EIF2AK4Q9P2K8 1649 aaKnown RBP29.29■■■□□ 2.28
CCDC88B-208ENST00000492980 ARID4BQ4LE39 1312 aaPredicted RBP29.27■■■□□ 2.28
CCDC88B-208ENST00000492980 VWDEQ8N2E2 1590 aa29.27■■■□□ 2.28
CCDC88B-208ENST00000492980 CFAP74Q9C0B2 1584 aa29.27■■■□□ 2.28
CCDC88B-208ENST00000492980 TET3O43151 1660 aa29.26■■■□□ 2.27
CCDC88B-208ENST00000492980 RGL3Q3MIN7 710 aa29.26■■■□□ 2.27
CCDC88B-208ENST00000492980 KIDINS220Q9ULH0 1771 aa29.26■■■□□ 2.27
CCDC88B-208ENST00000492980 ROCK2O75116 1388 aaKnown RBP29.25■■■□□ 2.27
CCDC88B-208ENST00000492980 PRKRIP1Q9H875 184 aaPredicted RBP29.24■■■□□ 2.27
CCDC88B-208ENST00000492980 TRPM2O94759 1503 aa29.24■■■□□ 2.27
CCDC88B-208ENST00000492980 DHX29Q7Z478 1369 aaKnown RBP29.23■■■□□ 2.27
CCDC88B-208ENST00000492980 SPHKAPQ2M3C7 1700 aa29.23■■■□□ 2.27
CCDC88B-208ENST00000492980 CD109Q6YHK3 1445 aa29.23■■■□□ 2.27
CCDC88B-208ENST00000492980 ZNF518AQ6AHZ1 1483 aa29.23■■■□□ 2.27
CCDC88B-208ENST00000492980 PRDM15P57071 1507 aaPredicted RBP29.22■■■□□ 2.27
CCDC88B-208ENST00000492980 LAMC1P11047 1609 aa29.21■■■□□ 2.27
CCDC88B-208ENST00000492980 MROH1Q8NDA8 1641 aa29.21■■■□□ 2.27
CCDC88B-208ENST00000492980 PTPRTO14522 1441 aa29.19■■■□□ 2.26
CCDC88B-208ENST00000492980 GPRASP1Q5JY77 1395 aa29.19■■■□□ 2.26
CCDC88B-208ENST00000492980 MYT1LQ9UL68 1186 aa29.18■■■□□ 2.26
CCDC88B-208ENST00000492980 KANK1Q14678 1352 aa29.18■■■□□ 2.26
CCDC88B-208ENST00000492980 CEP152O94986 1710 aa29.18■■■□□ 2.26
CCDC88B-208ENST00000492980 ST20-MTHFSA0A0A6YYL1 179 aa29.18■■■□□ 2.26
CCDC88B-208ENST00000492980 KIF3BO15066 747 aa29.15■■■□□ 2.26
CCDC88B-208ENST00000492980 POGZQ7Z3K3 1410 aa29.15■■■□□ 2.26
CCDC88B-208ENST00000492980 CLTCL1P53675 1640 aa29.15■■■□□ 2.26
CCDC88B-208ENST00000492980 POLR3GLQ9BT43 218 aa29.13■■■□□ 2.25
CCDC88B-208ENST00000492980 NBPF1Q3BBV0 1214 aa29.12■■■□□ 2.25
CCDC88B-208ENST00000492980 CCDC184Q52MB2 194 aa29.12■■■□□ 2.25
CCDC88B-208ENST00000492980 RNF17Q9BXT8 1623 aaKnown RBP29.1■■■□□ 2.25
CCDC88B-208ENST00000492980 MLH3Q9UHC1 1453 aa29.08■■■□□ 2.25
CCDC88B-208ENST00000492980 HECW2Q9P2P5 1572 aa29.08■■■□□ 2.25
CCDC88B-208ENST00000492980 SUPT16HQ9Y5B9 1047 aaKnown RBP29.08■■■□□ 2.25
CCDC88B-208ENST00000492980 MADDQ8WXG6 1647 aa29.07■■■□□ 2.24
CCDC88B-208ENST00000492980 EFCAB6Q5THR3 1501 aa29.06■■■□□ 2.24
CCDC88B-208ENST00000492980 NEO1Q92859 1461 aa29.05■■■□□ 2.24
CCDC88B-208ENST00000492980 FRMPD1Q5SYB0 1578 aa29.05■■■□□ 2.24
CCDC88B-208ENST00000492980 LMTK2Q8IWU2 1503 aa29.03■■■□□ 2.24
CCDC88B-208ENST00000492980 PPRC1Q5VV67 1664 aaKnown RBP29.03■■■□□ 2.24
CCDC88B-208ENST00000492980 NEURL4Q96JN8 1562 aa29.03■■■□□ 2.24
CCDC88B-208ENST00000492980 HNRNPUQ00839 825 aaKnown RBP eCLIP29.02■■■□□ 2.24
CCDC88B-208ENST00000492980 MRS2Q9HD23 443 aa29.02■■■□□ 2.24
CCDC88B-208ENST00000492980 ABCA6Q8N139 1617 aa29■■■□□ 2.23
CCDC88B-208ENST00000492980 MAP3K4Q9Y6R4 1608 aa28.98■■■□□ 2.23
CCDC88B-208ENST00000492980 COL17A1Q9UMD9 1497 aaPredicted RBP28.98■■■□□ 2.23
CCDC88B-208ENST00000492980 STAC3Q96MF2 364 aa28.96■■■□□ 2.23
CCDC88B-208ENST00000492980 UGGT1Q9NYU2 1555 aa28.95■■■□□ 2.22
CCDC88B-208ENST00000492980 IQGAP1P46940 1657 aa28.95■■■□□ 2.22
CCDC88B-208ENST00000492980 TESK2Q96S53 571 aa28.94■■■□□ 2.22
CCDC88B-208ENST00000492980 KIF1BO60333 1816 aa28.93■■■□□ 2.22
CCDC88B-208ENST00000492980 RIMBP3CA6NJZ7 1639 aa28.92■■■□□ 2.22
CCDC88B-208ENST00000492980 RIMBP3BA6NNM3 1639 aa28.92■■■□□ 2.22
CCDC88B-208ENST00000492980 RIMBP3Q9UFD9 1639 aa28.92■■■□□ 2.22
CCDC88B-208ENST00000492980 FAM9BQ8IZU0 186 aa28.91■■■□□ 2.22
CCDC88B-208ENST00000492980 RICTORQ6R327 1708 aa28.91■■■□□ 2.22
CCDC88B-208ENST00000492980 GLI2P10070 1586 aa28.9■■■□□ 2.22
CCDC88B-208ENST00000492980 DISP3Q9P2K9 1392 aa28.9■■■□□ 2.22
CCDC88B-208ENST00000492980 CYB5RLQ6IPT4 315 aa28.89■■■□□ 2.22
CCDC88B-208ENST00000492980 KIAA1210Q9ULL0 1709 aa28.89■■■□□ 2.22
CCDC88B-208ENST00000492980 DIP2CQ9Y2E4 1556 aa28.88■■■□□ 2.21
CCDC88B-208ENST00000492980 RAPGEF3O95398 923 aa28.88■■■□□ 2.21
CCDC88B-208ENST00000492980 MROH2AA6NES4 1674 aa28.87■■■□□ 2.21
CCDC88B-208ENST00000492980 IFT172Q9UG01 1749 aa28.87■■■□□ 2.21
CCDC88B-208ENST00000492980 CNGB1Q14028 1251 aaPredicted RBP28.87■■■□□ 2.21
CCDC88B-208ENST00000492980 MYOM2P54296 1465 aa28.86■■■□□ 2.21
CCDC88B-208ENST00000492980 KTN1Q86UP2 1357 aaKnown RBP28.84■■■□□ 2.21
CCDC88B-208ENST00000492980 ABCC3O15438 1527 aa28.83■■■□□ 2.21
CCDC88B-208ENST00000492980 NPATQ14207 1427 aa28.83■■■□□ 2.21
CCDC88B-208ENST00000492980 SCAF11Q99590 1463 aaKnown RBP28.82■■■□□ 2.2
CCDC88B-208ENST00000492980 TMF1P82094 1093 aa28.81■■■□□ 2.2
CCDC88B-208ENST00000492980 GGT6Q6P531 493 aa28.81■■■□□ 2.2
CCDC88B-208ENST00000492980 ADGRB3O60242 1522 aa28.81■■■□□ 2.2
CCDC88B-208ENST00000492980 FKBP8Q14318 412 aa28.8■■■□□ 2.2
CCDC88B-208ENST00000492980 CAMSAP1Q5T5Y3 1602 aa28.79■■■□□ 2.2
CCDC88B-208ENST00000492980 RALBP1Q15311 655 aa28.78■■■□□ 2.2
CCDC88B-208ENST00000492980 ZBED9Q6R2W3 1325 aa28.78■■■□□ 2.2
CCDC88B-208ENST00000492980 DIP2BQ9P265 1576 aa28.76■■■□□ 2.19
CCDC88B-208ENST00000492980 MYBBP1AQ9BQG0 1328 aaKnown RBP28.75■■■□□ 2.19
CCDC88B-208ENST00000492980 PER1O15534 1290 aaPredicted RBP28.75■■■□□ 2.19
CCDC88B-208ENST00000492980 NEFLP07196 543 aa28.75■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms