RNA–Protein interactions for RNA: ENST00000491860.1

NUP50-217, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-217ENST00000491860 CEP170BQ9Y4F5 1589 aaPredicted RBP13.82□□□□□ -0.2
NUP50-217ENST00000491860 ZNF644Q9H582 1327 aaPredicted RBP13.82□□□□□ -0.2
NUP50-217ENST00000491860 CLTCQ00610 1675 aaKnown RBP13.82□□□□□ -0.2
NUP50-217ENST00000491860 GGT6Q6P531 493 aa13.8□□□□□ -0.2
NUP50-217ENST00000491860 ZNF335Q9H4Z2 1342 aaPredicted RBP13.8□□□□□ -0.2
NUP50-217ENST00000491860 PTPRKQ15262 1439 aa13.8□□□□□ -0.2
NUP50-217ENST00000491860 LOC105371045A0A1W2PR82 267 aa13.79□□□□□ -0.2
NUP50-217ENST00000491860 NCKAP5LQ9HCH0 1330 aa13.79□□□□□ -0.2
NUP50-217ENST00000491860 MIA2Q96PC5 1412 aa13.79□□□□□ -0.2
NUP50-217ENST00000491860 UBAP1LF5GYI3 381 aa13.78□□□□□ -0.2
NUP50-217ENST00000491860 APLP2Q06481 763 aa13.78□□□□□ -0.2
NUP50-217ENST00000491860 MAST1Q9Y2H9 1570 aa13.75□□□□□ -0.21
NUP50-217ENST00000491860 KDM5DQ9BY66 1539 aa13.74□□□□□ -0.21
NUP50-217ENST00000491860 A2ML1A8K2U0 1454 aa13.74□□□□□ -0.21
NUP50-217ENST00000491860 MYOM3Q5VTT5 1437 aa13.74□□□□□ -0.21
NUP50-217ENST00000491860 KIF3BO15066 747 aa13.74□□□□□ -0.21
NUP50-217ENST00000491860 DNMT1P26358 1616 aaKnown RBP13.74□□□□□ -0.21
NUP50-217ENST00000491860 CPS1P31327 1500 aa13.73□□□□□ -0.21
NUP50-217ENST00000491860 POLR1AO95602 1720 aaPredicted RBP13.73□□□□□ -0.21
NUP50-217ENST00000491860 EIF2AK4Q9P2K8 1649 aaKnown RBP13.72□□□□□ -0.21
NUP50-217ENST00000491860 MED1Q15648 1581 aaPredicted RBP13.71□□□□□ -0.21
NUP50-217ENST00000491860 WASHC2CQ9Y4E1 1318 aa13.71□□□□□ -0.21
NUP50-217ENST00000491860 PZPP20742 1482 aa13.71□□□□□ -0.21
NUP50-217ENST00000491860 NEURL4Q96JN8 1562 aa13.71□□□□□ -0.22
NUP50-217ENST00000491860 ZC3H13Q5T200 1668 aaKnown RBP13.7□□□□□ -0.22
NUP50-217ENST00000491860 KANK4Q5T7N3 995 aaPredicted RBP13.7□□□□□ -0.22
NUP50-217ENST00000491860 RNF17Q9BXT8 1623 aaKnown RBP13.69□□□□□ -0.22
NUP50-217ENST00000491860 SHANK2Q9UPX8 1470 aa13.68□□□□□ -0.22
NUP50-217ENST00000491860 TNRQ92752 1358 aa13.68□□□□□ -0.22
NUP50-217ENST00000491860 TOM1O60784 492 aa13.67□□□□□ -0.22
NUP50-217ENST00000491860 DUOX2Q9NRD8 1548 aa13.67□□□□□ -0.22
NUP50-217ENST00000491860 NLRP1Q9C000 1473 aa13.67□□□□□ -0.22
NUP50-217ENST00000491860 HSPA1LP34931 641 aa13.66□□□□□ -0.22
NUP50-217ENST00000491860 DEPDC5O75140 1603 aa13.65□□□□□ -0.22
NUP50-217ENST00000491860 PTPN23Q9H3S7 1636 aa13.65□□□□□ -0.22
NUP50-217ENST00000491860 VWDEQ8N2E2 1590 aa13.65□□□□□ -0.22
NUP50-217ENST00000491860 CROCC2H7BZ55 1655 aa13.65□□□□□ -0.22
NUP50-217ENST00000491860 ERBINQ96RT1 1412 aa13.64□□□□□ -0.23
NUP50-217ENST00000491860 MED14O60244 1454 aa13.64□□□□□ -0.23
NUP50-217ENST00000491860 THEMISQ8N1K5 641 aaPredicted RBP13.63□□□□□ -0.23
NUP50-217ENST00000491860 ALKQ9UM73 1620 aa13.63□□□□□ -0.23
NUP50-217ENST00000491860 ABCC3O15438 1527 aa13.63□□□□□ -0.23
NUP50-217ENST00000491860 FGD6Q6ZV73 1430 aa13.62□□□□□ -0.23
NUP50-217ENST00000491860 KIF15Q9NS87 1388 aa13.61□□□□□ -0.23
NUP50-217ENST00000491860 DAPK1P53355 1430 aa13.61□□□□□ -0.23
NUP50-217ENST00000491860 UGGT1Q9NYU2 1555 aa13.61□□□□□ -0.23
NUP50-217ENST00000491860 ABCC5O15440 1437 aa13.6□□□□□ -0.23
NUP50-217ENST00000491860 PIP4K2BP78356 416 aa13.6□□□□□ -0.23
NUP50-217ENST00000491860 FBXO31Q5XUX0 539 aaPredicted RBP13.6□□□□□ -0.23
NUP50-217ENST00000491860 ANKLE2Q86XL3 938 aa13.6□□□□□ -0.23
NUP50-217ENST00000491860 SCAF1Q9H7N4 1312 aaKnown RBP13.6□□□□□ -0.23
NUP50-217ENST00000491860 KANK1Q14678 1352 aa13.59□□□□□ -0.23
NUP50-217ENST00000491860 ANKRD30AQ9BXX3 1397 aa13.59□□□□□ -0.23
NUP50-217ENST00000491860 PRDM15P57071 1507 aaPredicted RBP13.59□□□□□ -0.23
NUP50-217ENST00000491860 NPHP4O75161 1426 aaPredicted RBP13.58□□□□□ -0.24
NUP50-217ENST00000491860 ARHGAP31Q2M1Z3 1444 aa13.58□□□□□ -0.24
NUP50-217ENST00000491860 MROH1Q8NDA8 1641 aa13.58□□□□□ -0.24
NUP50-217ENST00000491860 ERVK-7P63135 1459 aa13.58□□□□□ -0.24
NUP50-217ENST00000491860 IQGAP1P46940 1657 aa13.58□□□□□ -0.24
NUP50-217ENST00000491860 SYNMO15061 1565 aa13.58□□□□□ -0.24
NUP50-217ENST00000491860 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.58□□□□□ -0.24
NUP50-217ENST00000491860 CEP152O94986 1710 aa13.57□□□□□ -0.24
NUP50-217ENST00000491860 RRP7BPQ9NSQ0 103 aa13.56□□□□□ -0.24
NUP50-217ENST00000491860 STRCP1A6NGW2 1772 aa13.55□□□□□ -0.24
NUP50-217ENST00000491860 LRRC7Q96NW7 1537 aa13.54□□□□□ -0.24
NUP50-217ENST00000491860 ADGRL2O95490 1459 aa13.54□□□□□ -0.24
NUP50-217ENST00000491860 PHF23Q9BUL5 403 aaPredicted RBP13.53□□□□□ -0.24
NUP50-217ENST00000491860 CFAP65Q6ZU64 1925 aaKnown RBP13.52□□□□□ -0.24
NUP50-217ENST00000491860 LMTK2Q8IWU2 1503 aa13.52□□□□□ -0.25
NUP50-217ENST00000491860 UBR1Q8IWV7 1749 aa13.5□□□□□ -0.25
NUP50-217ENST00000491860 KDM5AP29375 1690 aaKnown RBP13.5□□□□□ -0.25
NUP50-217ENST00000491860 FAM50AQ14320 339 aaKnown RBP13.5□□□□□ -0.25
NUP50-217ENST00000491860 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.49□□□□□ -0.253e-6■□□□□ 11.3
NUP50-217ENST00000491860 CHIC2Q9UKJ5 165 aa13.49□□□□□ -0.25
NUP50-217ENST00000491860 EID1Q9Y6B2 187 aa13.48□□□□□ -0.25
NUP50-217ENST00000491860 SLIT1O75093 1534 aa13.48□□□□□ -0.25
NUP50-217ENST00000491860 SCAF11Q99590 1463 aaKnown RBP13.48□□□□□ -0.25
NUP50-217ENST00000491860 RPRD2Q5VT52 1461 aaKnown RBP13.47□□□□□ -0.25
NUP50-217ENST00000491860 ARHGAP23Q9P227 1491 aa13.47□□□□□ -0.25
NUP50-217ENST00000491860 ANKRD50Q9ULJ7 1429 aa13.47□□□□□ -0.25
NUP50-217ENST00000491860 EFCAB6Q5THR3 1501 aa13.46□□□□□ -0.25
NUP50-217ENST00000491860 STAG3Q9UJ98 1225 aa13.46□□□□□ -0.25
NUP50-217ENST00000491860 XIRP1Q702N8 1843 aaKnown RBP13.46□□□□□ -0.26
NUP50-217ENST00000491860 ROCK1Q13464 1354 aa13.45□□□□□ -0.26
NUP50-217ENST00000491860 PIK3C2BO00750 1634 aa13.44□□□□□ -0.26
NUP50-217ENST00000491860 SLC52A1Q9NWF4 448 aa13.44□□□□□ -0.26
NUP50-217ENST00000491860 RGS17Q9UGC6 210 aaPredicted RBP13.44□□□□□ -0.26
NUP50-217ENST00000491860 NOS1P29475 1434 aa13.43□□□□□ -0.26
NUP50-217ENST00000491860 TXNDC2Q86VQ3 553 aa13.43□□□□□ -0.26
NUP50-217ENST00000491860 FAM135BQ49AJ0 1406 aa13.42□□□□□ -0.26
NUP50-217ENST00000491860 TET3O43151 1660 aa13.42□□□□□ -0.26
NUP50-217ENST00000491860 TMEM2Q9UHN6 1383 aa13.42□□□□□ -0.26
NUP50-217ENST00000491860 GCC2Q8IWJ2 1684 aa13.4□□□□□ -0.26
NUP50-217ENST00000491860 HDGFP51858 240 aaKnown RBP13.4□□□□□ -0.26
NUP50-217ENST00000491860 UNC13BO14795 1591 aa13.4□□□□□ -0.26
NUP50-217ENST00000491860 ADGRB3O60242 1522 aa13.39□□□□□ -0.27
NUP50-217ENST00000491860 LTKP29376 864 aa13.39□□□□□ -0.27
NUP50-217ENST00000491860 IDI1Q13907 227 aa13.39□□□□□ -0.27
NUP50-217ENST00000491860 SENP3Q9H4L4 574 aaPredicted RBP13.35□□□□□ -0.27
NUP50-217ENST00000491860 IQGAP3Q86VI3 1631 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms