RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 HFM1A2PYH4 1435 aa10.26□□□□□ -0.77
SYNE1-229ENST00000490866 CCDC141Q6ZP82 1450 aa10.26□□□□□ -0.77
SYNE1-229ENST00000490866 DNMT1P26358 1616 aaKnown RBP10.25□□□□□ -0.77
SYNE1-229ENST00000490866 ABCC5O15440 1437 aa10.25□□□□□ -0.77
SYNE1-229ENST00000490866 MBD5Q9P267 1494 aa10.25□□□□□ -0.77
SYNE1-229ENST00000490866 HNRNPMP52272 730 aaKnown RBP eCLIP10.25□□□□□ -0.77
SYNE1-229ENST00000490866 TTC37Q6PGP7 1564 aa10.25□□□□□ -0.77
SYNE1-229ENST00000490866 ZNF644Q9H582 1327 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-229ENST00000490866 NCOA1Q15788 1441 aa10.24□□□□□ -0.77
SYNE1-229ENST00000490866 C19orf67A6NJJ6 358 aa10.24□□□□□ -0.77
SYNE1-229ENST00000490866 SPAG9O60271 1321 aaKnown RBP10.24□□□□□ -0.77
SYNE1-229ENST00000490866 ADGRL1O94910 1474 aa10.23□□□□□ -0.77
SYNE1-229ENST00000490866 ADGRL2O95490 1459 aa10.23□□□□□ -0.77
SYNE1-229ENST00000490866 ZNF518AQ6AHZ1 1483 aa10.23□□□□□ -0.77
SYNE1-229ENST00000490866 MAP3K4Q9Y6R4 1608 aa10.23□□□□□ -0.77
SYNE1-229ENST00000490866 SCAPERQ9BY12 1400 aa10.23□□□□□ -0.77
SYNE1-229ENST00000490866 MIER1Q8N108 512 aa10.22□□□□□ -0.77
SYNE1-229ENST00000490866 C9orf84Q5VXU9 1444 aa10.22□□□□□ -0.77
SYNE1-229ENST00000490866 CCER1Q8TC90 406 aaPredicted RBP10.21□□□□□ -0.77
SYNE1-229ENST00000490866 DENND4BO75064 1496 aaPredicted RBP10.21□□□□□ -0.78
SYNE1-229ENST00000490866 MAGI2Q86UL8 1455 aa10.21□□□□□ -0.78
SYNE1-229ENST00000490866 SAMD9LQ8IVG5 1584 aa10.21□□□□□ -0.78
SYNE1-229ENST00000490866 DIP2BQ9P265 1576 aa10.21□□□□□ -0.78
SYNE1-229ENST00000490866 MAST1Q9Y2H9 1570 aa10.21□□□□□ -0.78
SYNE1-229ENST00000490866 ABCC1P33527 1531 aa10.2□□□□□ -0.78
SYNE1-229ENST00000490866 CHIC2Q9UKJ5 165 aa10.2□□□□□ -0.78
SYNE1-229ENST00000490866 MYT1LQ9UL68 1186 aa10.2□□□□□ -0.78
SYNE1-229ENST00000490866 TIMELESSQ9UNS1 1208 aa10.2□□□□□ -0.78
SYNE1-229ENST00000490866 MLH3Q9UHC1 1453 aa10.19□□□□□ -0.78
SYNE1-229ENST00000490866 NAIPQ13075 1403 aa10.19□□□□□ -0.78
SYNE1-229ENST00000490866 ZBTB47Q9UFB7 747 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-229ENST00000490866 RAB3GAP2Q9H2M9 1393 aa10.18□□□□□ -0.78
SYNE1-229ENST00000490866 MNX1P50219 401 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-229ENST00000490866 AFAP1Q8N556 730 aa10.18□□□□□ -0.78
SYNE1-229ENST00000490866 RRP7BPQ9NSQ0 103 aa10.18□□□□□ -0.78
SYNE1-229ENST00000490866 ADGBQ8N7X0 1667 aa10.18□□□□□ -0.78
SYNE1-229ENST00000490866 SYCP2Q9BX26 1530 aa10.17□□□□□ -0.78
SYNE1-229ENST00000490866 PTPRKQ15262 1439 aa10.17□□□□□ -0.78
SYNE1-229ENST00000490866 ANKRD50Q9ULJ7 1429 aa10.17□□□□□ -0.78
SYNE1-229ENST00000490866 PLCD3Q8N3E9 789 aa10.17□□□□□ -0.78
SYNE1-229ENST00000490866 SP7Q8TDD2 431 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-229ENST00000490866 DUOX2Q9NRD8 1548 aa10.17□□□□□ -0.78
SYNE1-229ENST00000490866 ERBINQ96RT1 1412 aa10.16□□□□□ -0.78
SYNE1-229ENST00000490866 KIF15Q9NS87 1388 aa10.16□□□□□ -0.78
SYNE1-229ENST00000490866 CROCC2H7BZ55 1655 aa10.16□□□□□ -0.78
SYNE1-229ENST00000490866 CLCN6P51797 869 aa10.16□□□□□ -0.78
SYNE1-229ENST00000490866 PLXNC1O60486 1568 aa10.16□□□□□ -0.78
SYNE1-229ENST00000490866 POGZQ7Z3K3 1410 aa10.16□□□□□ -0.78
SYNE1-229ENST00000490866 DHX29Q7Z478 1369 aaKnown RBP10.15□□□□□ -0.78
SYNE1-229ENST00000490866 TRIM52Q96A61 297 aa10.14□□□□□ -0.79
SYNE1-229ENST00000490866 GCC2Q8IWJ2 1684 aa10.14□□□□□ -0.79
SYNE1-229ENST00000490866 TRAPPC8Q9Y2L5 1435 aa10.14□□□□□ -0.79
SYNE1-229ENST00000490866 KANK1Q14678 1352 aa10.14□□□□□ -0.79
SYNE1-229ENST00000490866 ARHGEF12Q9NZN5 1544 aa10.13□□□□□ -0.79
SYNE1-229ENST00000490866 CD44P16070 742 aaKnown RBP10.13□□□□□ -0.79
SYNE1-229ENST00000490866 KDM5CP41229 1560 aa10.13□□□□□ -0.79
SYNE1-229ENST00000490866 KIF13AQ9H1H9 1805 aa10.12□□□□□ -0.79
SYNE1-229ENST00000490866 MPHOSPH9Q99550 1183 aa10.12□□□□□ -0.79
SYNE1-229ENST00000490866 ATP7AQ04656 1500 aa10.12□□□□□ -0.79
SYNE1-229ENST00000490866 PAK3O75914 559 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-229ENST00000490866 RAPGEF3O95398 923 aa10.1□□□□□ -0.79
SYNE1-229ENST00000490866 EVX2Q03828 476 aa10.1□□□□□ -0.79
SYNE1-229ENST00000490866 ZMYM4Q5VZL5 1548 aa10.09□□□□□ -0.79
SYNE1-229ENST00000490866 NUP155O75694 1391 aa10.09□□□□□ -0.79
SYNE1-229ENST00000490866 DHX57Q6P158 1386 aaKnown RBP10.09□□□□□ -0.79
SYNE1-229ENST00000490866 HECW2Q9P2P5 1572 aa10.09□□□□□ -0.79
SYNE1-229ENST00000490866 ZFYVE16Q7Z3T8 1539 aa10.08□□□□□ -0.8
SYNE1-229ENST00000490866 EIF2AK4Q9P2K8 1649 aaKnown RBP10.08□□□□□ -0.8
SYNE1-229ENST00000490866 STAC3Q96MF2 364 aa10.08□□□□□ -0.8
SYNE1-229ENST00000490866 ATP10AO60312 1499 aa10.08□□□□□ -0.8
SYNE1-229ENST00000490866 A2MP01023 1474 aa10.08□□□□□ -0.8
SYNE1-229ENST00000490866 INO80Q9ULG1 1556 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-229ENST00000490866 TSPOAP1O95153 1857 aa10.08□□□□□ -0.8
SYNE1-229ENST00000490866 KIF3BO15066 747 aa10.07□□□□□ -0.8
SYNE1-229ENST00000490866 VASPP50552 380 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-229ENST00000490866 RICTORQ6R327 1708 aa10.07□□□□□ -0.8
SYNE1-229ENST00000490866 FAM135AQ9P2D6 1515 aa10.06□□□□□ -0.8
SYNE1-229ENST00000490866 PPRC1Q5VV67 1664 aaKnown RBP10.06□□□□□ -0.8
SYNE1-229ENST00000490866 REREQ9P2R6 1566 aa10.05□□□□□ -0.8
SYNE1-229ENST00000490866 ESF1Q9H501 851 aaKnown RBP10.05□□□□□ -0.8
SYNE1-229ENST00000490866 KDM5DQ9BY66 1539 aa10.05□□□□□ -0.8
SYNE1-229ENST00000490866 KIDINS220Q9ULH0 1771 aa10.05□□□□□ -0.8
SYNE1-229ENST00000490866 AGLP35573 1532 aa10.04□□□□□ -0.8
SYNE1-229ENST00000490866 ZRANB1Q9UGI0 708 aa10.04□□□□□ -0.8
SYNE1-229ENST00000490866 BCORL1Q5H9F3 1711 aa10.04□□□□□ -0.8
SYNE1-229ENST00000490866 WASHC2CQ9Y4E1 1318 aa10.04□□□□□ -0.8
SYNE1-229ENST00000490866 ZNF579Q8NAF0 562 aaKnown RBP10.03□□□□□ -0.8
SYNE1-229ENST00000490866 PKD2Q13563 968 aa10.02□□□□□ -0.81
SYNE1-229ENST00000490866 UNC13BO14795 1591 aa10.01□□□□□ -0.81
SYNE1-229ENST00000490866 RPRD2Q5VT52 1461 aaKnown RBP10.01□□□□□ -0.81
SYNE1-229ENST00000490866 GGT6Q6P531 493 aa10□□□□□ -0.81
SYNE1-229ENST00000490866 KDM6BO15054 1643 aa10□□□□□ -0.81
SYNE1-229ENST00000490866 DEPDC5O75140 1603 aa10□□□□□ -0.81
SYNE1-229ENST00000490866 LMTK2Q8IWU2 1503 aa9.99□□□□□ -0.81
SYNE1-229ENST00000490866 IQGAP3Q86VI3 1631 aa9.99□□□□□ -0.81
SYNE1-229ENST00000490866 ANKRD30BQ9BXX2 1392 aa9.99□□□□□ -0.81
SYNE1-229ENST00000490866 DIP2CQ9Y2E4 1556 aa9.98□□□□□ -0.81
SYNE1-229ENST00000490866 GABBR2O75899 941 aa9.98□□□□□ -0.81
SYNE1-229ENST00000490866 SLC52A1Q9NWF4 448 aa9.98□□□□□ -0.81
SYNE1-229ENST00000490866 ARHGAP31Q2M1Z3 1444 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms