RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 PTPREP23469 700 aa11.02□□□□□ -0.65
HMGB1P38-201ENST00000490557 KRI1Q8N9T8 703 aaKnown RBP11.02□□□□□ -0.65
HMGB1P38-201ENST00000490557 BCL2L12Q9HB09 334 aa11.01□□□□□ -0.65
HMGB1P38-201ENST00000490557 CDHR5Q9HBB8 845 aa11.01□□□□□ -0.65
HMGB1P38-201ENST00000490557 PTGDRQ13258 359 aa11□□□□□ -0.65
HMGB1P38-201ENST00000490557 HIC1Q14526 733 aa11□□□□□ -0.65
HMGB1P38-201ENST00000490557 CERKQ8TCT0 537 aa11□□□□□ -0.65
HMGB1P38-201ENST00000490557 ZMYND10O75800 440 aa10.99□□□□□ -0.65
HMGB1P38-201ENST00000490557 KCNK17Q96T54 332 aa10.99□□□□□ -0.65
HMGB1P38-201ENST00000490557 GNPATO15228 680 aa10.98□□□□□ -0.65
HMGB1P38-201ENST00000490557 BARGINQ6ZT62 677 aa10.96□□□□□ -0.65
HMGB1P38-201ENST00000490557 GPR37O15354 613 aa10.95□□□□□ -0.66
HMGB1P38-201ENST00000490557 HS3ST6Q96QI5 342 aa10.95□□□□□ -0.66
HMGB1P38-201ENST00000490557 PPP1R3GB7ZBB8 358 aa10.94□□□□□ -0.66
HMGB1P38-201ENST00000490557 PBX2P40425 430 aa10.93□□□□□ -0.66
HMGB1P38-201ENST00000490557 SLC24A3Q9HC58 644 aa10.93□□□□□ -0.66
HMGB1P38-201ENST00000490557 NPDC1Q9NQX5 325 aaPredicted RBP10.93□□□□□ -0.66
HMGB1P38-201ENST00000490557 ARHGAP33O14559 1287 aa10.92□□□□□ -0.66
HMGB1P38-201ENST00000490557 LCE2DQ5TA82 110 aaPredicted RBP10.92□□□□□ -0.66
HMGB1P38-201ENST00000490557 ZNF687Q8N1G0 1237 aa10.92□□□□□ -0.66
HMGB1P38-201ENST00000490557 COL9A1P20849 921 aa10.91□□□□□ -0.66
HMGB1P38-201ENST00000490557 PRSS12P56730 875 aa10.91□□□□□ -0.66
HMGB1P38-201ENST00000490557 MAP2K5Q13163 448 aa10.91□□□□□ -0.66
HMGB1P38-201ENST00000490557 MINK1Q8N4C8 1332 aaPredicted RBP10.9□□□□□ -0.66
HMGB1P38-201ENST00000490557 PADI6Q6TGC4 694 aa10.9□□□□□ -0.66
HMGB1P38-201ENST00000490557 CDCA7LQ96GN5 454 aa10.9□□□□□ -0.66
HMGB1P38-201ENST00000490557 PSEN2P49810 448 aa10.89□□□□□ -0.67
HMGB1P38-201ENST00000490557 AK7Q96M32 723 aa10.89□□□□□ -0.67
HMGB1P38-201ENST00000490557 RBM27Q9P2N5 1060 aaKnown RBP10.89□□□□□ -0.67
HMGB1P38-201ENST00000490557 AXIN2Q9Y2T1 843 aa10.89□□□□□ -0.67
HMGB1P38-201ENST00000490557 FECHP22830 423 aa10.88□□□□□ -0.67
HMGB1P38-201ENST00000490557 IRF6O14896 467 aa10.86□□□□□ -0.67
HMGB1P38-201ENST00000490557 PACS2Q86VP3 889 aa10.86□□□□□ -0.67
HMGB1P38-201ENST00000490557 CCDC102AQ96A19 550 aa10.85□□□□□ -0.67
HMGB1P38-201ENST00000490557 POTEB3A0JP26 581 aa10.84□□□□□ -0.67
HMGB1P38-201ENST00000490557 TRIM6-TRIM34B2RNG4 842 aa10.84□□□□□ -0.67
HMGB1P38-201ENST00000490557 POTEBQ6S5H4 581 aa10.84□□□□□ -0.67
HMGB1P38-201ENST00000490557 OATP04181 439 aa10.83□□□□□ -0.68
HMGB1P38-201ENST00000490557 NBPF26B4DH59 902 aa10.82□□□□□ -0.68
HMGB1P38-201ENST00000490557 PROX2Q3B8N5 592 aa10.82□□□□□ -0.68
HMGB1P38-201ENST00000490557 DMRTA1Q5VZB9 504 aa10.82□□□□□ -0.68
HMGB1P38-201ENST00000490557 POTEEQ6S8J3 1075 aa10.82□□□□□ -0.68
HMGB1P38-201ENST00000490557 ZBED2Q9BTP6 218 aa10.82□□□□□ -0.68
HMGB1P38-201ENST00000490557 RBM46Q8TBY0 533 aaKnown RBP10.81□□□□□ -0.68
HMGB1P38-201ENST00000490557 TSKSQ9UJT2 592 aa10.81□□□□□ -0.68
HMGB1P38-201ENST00000490557 ONECUT3O60422 494 aaPredicted RBP10.8□□□□□ -0.68
HMGB1P38-201ENST00000490557 TTC13Q8NBP0 860 aa10.8□□□□□ -0.68
HMGB1P38-201ENST00000490557 LSM11P83369 360 aaKnown RBP eCLIP10.79□□□□□ -0.68
HMGB1P38-201ENST00000490557 FAM161AQ3B820 660 aa10.79□□□□□ -0.68
HMGB1P38-201ENST00000490557 POTEGQ6S5H5 508 aa10.79□□□□□ -0.68
HMGB1P38-201ENST00000490557 SLC4A5Q9BY07 1137 aa10.79□□□□□ -0.68
HMGB1P38-201ENST00000490557 KIAA1468Q9P260 1216 aa10.79□□□□□ -0.68
HMGB1P38-201ENST00000490557 PNMA3Q9UL41 463 aa10.79□□□□□ -0.68
HMGB1P38-201ENST00000490557 ADGRG1Q9Y653 693 aa10.79□□□□□ -0.68
HMGB1P38-201ENST00000490557 POTEMA6NI47 508 aa10.78□□□□□ -0.68
HMGB1P38-201ENST00000490557 TRIM66O15016 1216 aa10.78□□□□□ -0.68
HMGB1P38-201ENST00000490557 ANKRD13DQ6ZTN6 518 aa10.78□□□□□ -0.68
HMGB1P38-201ENST00000490557 NUDT18Q6ZVK8 323 aa10.78□□□□□ -0.68
HMGB1P38-201ENST00000490557 STAC3Q96MF2 364 aa10.78□□□□□ -0.68
HMGB1P38-201ENST00000490557 NEUROD2Q15784 382 aa10.77□□□□□ -0.69
HMGB1P38-201ENST00000490557 TATDN2Q93075 761 aa10.77□□□□□ -0.69
HMGB1P38-201ENST00000490557 RABGEF1Q9UJ41 708 aa10.77□□□□□ -0.69
HMGB1P38-201ENST00000490557 VPS9D1Q9Y2B5 631 aa10.77□□□□□ -0.69
HMGB1P38-201ENST00000490557 TTLL12Q14166 644 aaPredicted RBP10.76□□□□□ -0.69
HMGB1P38-201ENST00000490557 METTL3Q86U44 580 aaKnown RBP10.76□□□□□ -0.69
HMGB1P38-201ENST00000490557 NBPF3Q9H094 633 aa10.76□□□□□ -0.69
HMGB1P38-201ENST00000490557 FAM198AQ9UFP1 575 aa10.76□□□□□ -0.69
HMGB1P38-201ENST00000490557 TK2O00142 265 aa10.75□□□□□ -0.69
HMGB1P38-201ENST00000490557 PDE4DQ08499 809 aa10.74□□□□□ -0.69
HMGB1P38-201ENST00000490557 ADGRD1Q6QNK2 874 aa10.74□□□□□ -0.69
HMGB1P38-201ENST00000490557 PXYLP1Q8TE99 480 aa10.74□□□□□ -0.69
HMGB1P38-201ENST00000490557 SMAPO00193 183 aa10.73□□□□□ -0.69
HMGB1P38-201ENST00000490557 SEPT9Q9UHD8 586 aaPredicted RBP10.72□□□□□ -0.69
HMGB1P38-201ENST00000490557 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.71□□□□□ -0.69
HMGB1P38-201ENST00000490557 CLCN1P35523 988 aa10.71□□□□□ -0.69
HMGB1P38-201ENST00000490557 HDGFP51858 240 aaKnown RBP10.71□□□□□ -0.69
HMGB1P38-201ENST00000490557 AMHR2Q16671 573 aa10.71□□□□□ -0.69
HMGB1P38-201ENST00000490557 CDAN1Q8IWY9 1227 aa10.71□□□□□ -0.69
HMGB1P38-201ENST00000490557 DNAJB2P25686 324 aa10.7□□□□□ -0.7
HMGB1P38-201ENST00000490557 MDM2Q00987 491 aaPredicted RBP10.7□□□□□ -0.7
HMGB1P38-201ENST00000490557 MRPL50Q8N5N7 158 aaKnown RBP10.7□□□□□ -0.7
HMGB1P38-201ENST00000490557 EYA1Q99502 592 aa10.7□□□□□ -0.7
HMGB1P38-201ENST00000490557 RCCD1A6NED2 376 aa10.69□□□□□ -0.7
HMGB1P38-201ENST00000490557 GOLGA8CPA6NN73 597 aa10.69□□□□□ -0.7
HMGB1P38-201ENST00000490557 BRPF1P55201 1214 aaPredicted RBP10.69□□□□□ -0.7
HMGB1P38-201ENST00000490557 SLC4A3P48751 1232 aa10.68□□□□□ -0.7
HMGB1P38-201ENST00000490557 FAM98CQ17RN3 349 aaKnown RBP10.68□□□□□ -0.7
HMGB1P38-201ENST00000490557 LAPTM4BQ86VI4 370 aa10.68□□□□□ -0.7
HMGB1P38-201ENST00000490557 PHOX2BQ99453 314 aa10.68□□□□□ -0.7
HMGB1P38-201ENST00000490557 GPCPD1Q9NPB8 672 aa10.68□□□□□ -0.7
HMGB1P38-201ENST00000490557 C3orf80F5H4A9 247 aa10.67□□□□□ -0.7
HMGB1P38-201ENST00000490557 NLRP7Q8WX94 980 aa10.67□□□□□ -0.7
HMGB1P38-201ENST00000490557 PARP9Q8IXQ6 854 aa10.66□□□□□ -0.7
HMGB1P38-201ENST00000490557 GPBP1L1Q9HC44 474 aaPredicted RBP10.66□□□□□ -0.7
HMGB1P38-201ENST00000490557 KRTAP3-3Q9BYR6 98 aa10.65□□□□□ -0.7
HMGB1P38-201ENST00000490557 KRTAP3-2Q9BYR7 98 aa10.65□□□□□ -0.7
HMGB1P38-201ENST00000490557 KDM4CQ9H3R0 1056 aa10.65□□□□□ -0.7
HMGB1P38-201ENST00000490557 GIGYF2Q6Y7W6 1299 aaKnown RBP10.64□□□□□ -0.71
HMGB1P38-201ENST00000490557 BHMG1C9JSJ3 638 aaPredicted RBP10.63□□□□□ -0.71
HMGB1P38-201ENST00000490557 TMEM134Q9H6X4 195 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms