RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 KIF3BO15066 747 aa15.31■□□□□ 0.04
TMEM39A-210ENST00000490099 MAST1Q9Y2H9 1570 aa15.3■□□□□ 0.04
TMEM39A-210ENST00000490099 PTPRTO14522 1441 aa15.29■□□□□ 0.04
TMEM39A-210ENST00000490099 FAM135AQ9P2D6 1515 aa15.28■□□□□ 0.04
TMEM39A-210ENST00000490099 CLTCQ00610 1675 aaKnown RBP15.28■□□□□ 0.04
TMEM39A-210ENST00000490099 NCOA1Q15788 1441 aa15.27■□□□□ 0.04
TMEM39A-210ENST00000490099 APLP2Q06481 763 aa15.27■□□□□ 0.04
TMEM39A-210ENST00000490099 KCNA4P22459 653 aa15.26■□□□□ 0.03
TMEM39A-210ENST00000490099 CERKQ8TCT0 537 aa15.26■□□□□ 0.03
TMEM39A-210ENST00000490099 ABCC5O15440 1437 aa15.25■□□□□ 0.03
TMEM39A-210ENST00000490099 WASHC2CQ9Y4E1 1318 aa15.23■□□□□ 0.03
TMEM39A-210ENST00000490099 TCOF1Q13428 1488 aaKnown RBP15.23■□□□□ 0.03
TMEM39A-210ENST00000490099 FBXO31Q5XUX0 539 aaPredicted RBP15.23■□□□□ 0.03
TMEM39A-210ENST00000490099 KDM5DQ9BY66 1539 aa15.22■□□□□ 0.03
TMEM39A-210ENST00000490099 PZPP20742 1482 aa15.22■□□□□ 0.03
TMEM39A-210ENST00000490099 FGD6Q6ZV73 1430 aa15.22■□□□□ 0.03
TMEM39A-210ENST00000490099 PLA2R1Q13018 1463 aa15.21■□□□□ 0.03
TMEM39A-210ENST00000490099 SHANK2Q9UPX8 1470 aa15.21■□□□□ 0.03
TMEM39A-210ENST00000490099 RNF17Q9BXT8 1623 aaKnown RBP15.21■□□□□ 0.02
TMEM39A-210ENST00000490099 PKD2Q13563 968 aa15.2■□□□□ 0.02
TMEM39A-210ENST00000490099 CAMSAP1Q5T5Y3 1602 aa15.2■□□□□ 0.02
TMEM39A-210ENST00000490099 A2ML1A8K2U0 1454 aa15.2■□□□□ 0.02
TMEM39A-210ENST00000490099 CEP170BQ9Y4F5 1589 aaPredicted RBP15.19■□□□□ 0.02
TMEM39A-210ENST00000490099 ZNF142P52746 1687 aaPredicted RBP15.19■□□□□ 0.02
TMEM39A-210ENST00000490099 PTPN23Q9H3S7 1636 aa15.19■□□□□ 0.02
TMEM39A-210ENST00000490099 TNRQ92752 1358 aa15.19■□□□□ 0.02
TMEM39A-210ENST00000490099 DUOX2Q9NRD8 1548 aa15.18■□□□□ 0.02
TMEM39A-210ENST00000490099 MYO3AQ8NEV4 1616 aa15.18■□□□□ 0.02
TMEM39A-210ENST00000490099 EIF2AK4Q9P2K8 1649 aaKnown RBP15.18■□□□□ 0.02
TMEM39A-210ENST00000490099 NCKAP5LQ9HCH0 1330 aa15.17■□□□□ 0.02
TMEM39A-210ENST00000490099 DAPK1P53355 1430 aa15.17■□□□□ 0.02
TMEM39A-210ENST00000490099 MROH1Q8NDA8 1641 aa15.17■□□□□ 0.02
TMEM39A-210ENST00000490099 KIF15Q9NS87 1388 aa15.17■□□□□ 0.02
TMEM39A-210ENST00000490099 ABCC3O15438 1527 aa15.17■□□□□ 0.02
TMEM39A-210ENST00000490099 NCBP3Q53F19 620 aaKnown RBP15.16■□□□□ 0.02
TMEM39A-210ENST00000490099 CNKSR2Q8WXI2 1034 aa15.16■□□□□ 0.02
TMEM39A-210ENST00000490099 LTBP4Q8N2S1 1624 aa15.16■□□□□ 0.02
TMEM39A-210ENST00000490099 DNMT1P26358 1616 aaKnown RBP15.15■□□□□ 0.02
TMEM39A-210ENST00000490099 RRP7BPQ9NSQ0 103 aa15.15■□□□□ 0.02
TMEM39A-210ENST00000490099 ERBINQ96RT1 1412 aa15.15■□□□□ 0.02
TMEM39A-210ENST00000490099 NLRP1Q9C000 1473 aa15.14■□□□□ 0.01
TMEM39A-210ENST00000490099 CROCC2H7BZ55 1655 aa15.13■□□□□ 0.01
TMEM39A-210ENST00000490099 ARHGAP31Q2M1Z3 1444 aa15.13■□□□□ 0.01
TMEM39A-210ENST00000490099 ANKRD30AQ9BXX3 1397 aa15.12■□□□□ 0.01
TMEM39A-210ENST00000490099 ZC3H13Q5T200 1668 aaKnown RBP15.12■□□□□ 0.01
TMEM39A-210ENST00000490099 SPATA31D1Q6ZQQ2 1576 aa15.11■□□□□ 0.01
TMEM39A-210ENST00000490099 THEMISQ8N1K5 641 aaPredicted RBP15.11■□□□□ 0.01
TMEM39A-210ENST00000490099 ADGRL2O95490 1459 aa15.11■□□□□ 0.01
TMEM39A-210ENST00000490099 PRDM15P57071 1507 aaPredicted RBP15.11■□□□□ 0.01
TMEM39A-210ENST00000490099 IQSEC2Q5JU85 1478 aa15.1■□□□□ 0.01
TMEM39A-210ENST00000490099 ERVK-7P63135 1459 aa15.09■□□□□ 0.01
TMEM39A-210ENST00000490099 DEPDC5O75140 1603 aa15.08■□□□□ 0
TMEM39A-210ENST00000490099 CHIC2Q9UKJ5 165 aa15.08■□□□□ 0
TMEM39A-210ENST00000490099 ANKLE2Q86XL3 938 aa15.07■□□□□ 0
TMEM39A-210ENST00000490099 ZNF335Q9H4Z2 1342 aaPredicted RBP15.07■□□□□ 0
TMEM39A-210ENST00000490099 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.07■□□□□ 0
TMEM39A-210ENST00000490099 MED14O60244 1454 aa15.07■□□□□ 0
TMEM39A-210ENST00000490099 VWDEQ8N2E2 1590 aa15.07■□□□□ 0
TMEM39A-210ENST00000490099 LMTK2Q8IWU2 1503 aa15.06■□□□□ 0
TMEM39A-210ENST00000490099 NEURL4Q96JN8 1562 aa15.06■□□□□ 0
TMEM39A-210ENST00000490099 UGGT1Q9NYU2 1555 aa15.06■□□□□ 0
TMEM39A-210ENST00000490099 FAM50AQ14320 339 aaKnown RBP15.05■□□□□ -0
TMEM39A-210ENST00000490099 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.03■□□□□ -0
TMEM39A-210ENST00000490099 CEP152O94986 1710 aa15.03■□□□□ -0
TMEM39A-210ENST00000490099 ANKRD50Q9ULJ7 1429 aa15.02■□□□□ -0
TMEM39A-210ENST00000490099 KANK1Q14678 1352 aa15.02■□□□□ -0
TMEM39A-210ENST00000490099 ROCK1Q13464 1354 aa15.01□□□□□ -0.01
TMEM39A-210ENST00000490099 ARHGAP23Q9P227 1491 aa15□□□□□ -0.01
TMEM39A-210ENST00000490099 POLR1AO95602 1720 aaPredicted RBP15□□□□□ -0.01
TMEM39A-210ENST00000490099 NPHP4O75161 1426 aaPredicted RBP15□□□□□ -0.01
TMEM39A-210ENST00000490099 NOS1P29475 1434 aa15□□□□□ -0.01
TMEM39A-210ENST00000490099 NPM3O75607 178 aaKnown RBP14.99□□□□□ -0.01
TMEM39A-210ENST00000490099 SLIT1O75093 1534 aa14.98□□□□□ -0.01
TMEM39A-210ENST00000490099 CFAP65Q6ZU64 1925 aaKnown RBP14.98□□□□□ -0.01
TMEM39A-210ENST00000490099 IDI1Q13907 227 aa14.98□□□□□ -0.01
TMEM39A-210ENST00000490099 LTKP29376 864 aa14.97□□□□□ -0.01
TMEM39A-210ENST00000490099 UBR1Q8IWV7 1749 aa14.97□□□□□ -0.01
TMEM39A-210ENST00000490099 CPS1P31327 1500 aa14.96□□□□□ -0.02
TMEM39A-210ENST00000490099 EFCAB6Q5THR3 1501 aa14.96□□□□□ -0.02
TMEM39A-210ENST00000490099 RPRD2Q5VT52 1461 aaKnown RBP14.95□□□□□ -0.02
TMEM39A-210ENST00000490099 TXNDC2Q86VQ3 553 aa14.95□□□□□ -0.02
TMEM39A-210ENST00000490099 SLC52A1Q9NWF4 448 aa14.95□□□□□ -0.02
TMEM39A-210ENST00000490099 TMEM2Q9UHN6 1383 aa14.95□□□□□ -0.02
TMEM39A-210ENST00000490099 SCAF11Q99590 1463 aaKnown RBP14.95□□□□□ -0.02
TMEM39A-210ENST00000490099 KDM5AP29375 1690 aaKnown RBP14.93□□□□□ -0.02
TMEM39A-210ENST00000490099 SYNMO15061 1565 aa14.93□□□□□ -0.02
TMEM39A-210ENST00000490099 IQGAP1P46940 1657 aa14.91□□□□□ -0.02
TMEM39A-210ENST00000490099 UBAP1LF5GYI3 381 aa14.91□□□□□ -0.02
TMEM39A-210ENST00000490099 PPARGC1BQ86YN6 1023 aaKnown RBP14.91□□□□□ -0.02
TMEM39A-210ENST00000490099 EID1Q9Y6B2 187 aa14.91□□□□□ -0.02
TMEM39A-210ENST00000490099 PIK3C2BO00750 1634 aa14.91□□□□□ -0.02
TMEM39A-210ENST00000490099 RRBP1Q9P2E9 1410 aaKnown RBP14.91□□□□□ -0.02
TMEM39A-210ENST00000490099 UNC13BO14795 1591 aa14.9□□□□□ -0.02
TMEM39A-210ENST00000490099 TET3O43151 1660 aa14.88□□□□□ -0.03
TMEM39A-210ENST00000490099 RNF216Q9NWF9 866 aaPredicted RBP14.88□□□□□ -0.03
TMEM39A-210ENST00000490099 STAG3Q9UJ98 1225 aa14.87□□□□□ -0.03
TMEM39A-210ENST00000490099 LRRC7Q96NW7 1537 aa14.87□□□□□ -0.03
TMEM39A-210ENST00000490099 STRCP1A6NGW2 1772 aa14.86□□□□□ -0.03
TMEM39A-210ENST00000490099 TOM1O60784 492 aa14.86□□□□□ -0.03
TMEM39A-210ENST00000490099 ADGRB3O60242 1522 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms