RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 FBXO31Q5XUX0 539 aaPredicted RBP22.52■■□□□ 1.2
VARS-227ENST00000489979 TNRQ92752 1358 aa22.51■■□□□ 1.19
VARS-227ENST00000489979 POLR1AO95602 1720 aaPredicted RBP22.51■■□□□ 1.19
VARS-227ENST00000489979 NEURL4Q96JN8 1562 aa22.49■■□□□ 1.19
VARS-227ENST00000489979 PZPP20742 1482 aa22.47■■□□□ 1.19
VARS-227ENST00000489979 CCDC141Q6ZP82 1450 aa22.47■■□□□ 1.19
VARS-227ENST00000489979 KDM5DQ9BY66 1539 aa22.47■■□□□ 1.19
VARS-227ENST00000489979 SCAF1Q9H7N4 1312 aaKnown RBP22.47■■□□□ 1.19
VARS-227ENST00000489979 WASHC2CQ9Y4E1 1318 aa22.46■■□□□ 1.19
VARS-227ENST00000489979 PIP4K2BP78356 416 aa22.45■■□□□ 1.18
VARS-227ENST00000489979 CAMSAP2Q08AD1 1489 aa22.45■■□□□ 1.18
VARS-227ENST00000489979 SHANK2Q9UPX8 1470 aa22.45■■□□□ 1.18
VARS-227ENST00000489979 CPS1P31327 1500 aa22.45■■□□□ 1.18
VARS-227ENST00000489979 FAM135AQ9P2D6 1515 aa22.45■■□□□ 1.18
VARS-227ENST00000489979 HSPA1LP34931 641 aa22.44■■□□□ 1.18
VARS-227ENST00000489979 NCOA2Q15596 1464 aa22.43■■□□□ 1.18
VARS-227ENST00000489979 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.43■■□□□ 1.18
VARS-227ENST00000489979 TOM1O60784 492 aa22.43■■□□□ 1.18
VARS-227ENST00000489979 ANKLE2Q86XL3 938 aa22.43■■□□□ 1.18
VARS-227ENST00000489979 RSPH4AQ5TD94 716 aa22.42■■□□□ 1.18
VARS-227ENST00000489979 MIA2Q96PC5 1412 aa22.4■■□□□ 1.18
VARS-227ENST00000489979 THEMISQ8N1K5 641 aaPredicted RBP22.4■■□□□ 1.18
VARS-227ENST00000489979 NLRP1Q9C000 1473 aa22.39■■□□□ 1.17
VARS-227ENST00000489979 VWDEQ8N2E2 1590 aa22.38■■□□□ 1.17
VARS-227ENST00000489979 UGGT1Q9NYU2 1555 aa22.38■■□□□ 1.17
VARS-227ENST00000489979 MED1Q15648 1581 aaPredicted RBP22.38■■□□□ 1.17
VARS-227ENST00000489979 ARHGEF5Q12774 1597 aa22.37■■□□□ 1.17
VARS-227ENST00000489979 TSPY4P0CV99 314 aa22.36■■□□□ 1.17
VARS-227ENST00000489979 TSPY10P0CW01 314 aa22.36■■□□□ 1.17
VARS-227ENST00000489979 NPHP4O75161 1426 aaPredicted RBP22.36■■□□□ 1.17
VARS-227ENST00000489979 MED14O60244 1454 aa22.35■■□□□ 1.17
VARS-227ENST00000489979 DEPDC5O75140 1603 aa22.35■■□□□ 1.17
VARS-227ENST00000489979 IQGAP1P46940 1657 aa22.31■■□□□ 1.16
VARS-227ENST00000489979 RNF17Q9BXT8 1623 aaKnown RBP22.31■■□□□ 1.16
VARS-227ENST00000489979 ALKQ9UM73 1620 aa22.31■■□□□ 1.16
VARS-227ENST00000489979 ABCC3O15438 1527 aa22.3■■□□□ 1.16
VARS-227ENST00000489979 STRCP1A6NGW2 1772 aa22.27■■□□□ 1.16
VARS-227ENST00000489979 ZC3H13Q5T200 1668 aaKnown RBP22.27■■□□□ 1.16
VARS-227ENST00000489979 MAST1Q9Y2H9 1570 aa22.26■■□□□ 1.15
VARS-227ENST00000489979 CFAP65Q6ZU64 1925 aaKnown RBP22.25■■□□□ 1.15
VARS-227ENST00000489979 ERVK-7P63135 1459 aa22.25■■□□□ 1.15
VARS-227ENST00000489979 LRRC9Q6ZRR7 1453 aa22.24■■□□□ 1.15
VARS-227ENST00000489979 LRRC7Q96NW7 1537 aa22.24■■□□□ 1.15
VARS-227ENST00000489979 EIF2AK4Q9P2K8 1649 aaKnown RBP22.24■■□□□ 1.15
VARS-227ENST00000489979 PHF23Q9BUL5 403 aaPredicted RBP22.23■■□□□ 1.15
VARS-227ENST00000489979 MROH1Q8NDA8 1641 aa22.22■■□□□ 1.15
VARS-227ENST00000489979 SENP3Q9H4L4 574 aaPredicted RBP22.22■■□□□ 1.15
VARS-227ENST00000489979 CEP152O94986 1710 aa22.22■■□□□ 1.15
VARS-227ENST00000489979 SYNMO15061 1565 aa22.21■■□□□ 1.15
VARS-227ENST00000489979 UBR1Q8IWV7 1749 aa22.2■■□□□ 1.14
VARS-227ENST00000489979 VPS8Q8N3P4 1428 aa22.17■■□□□ 1.14
VARS-227ENST00000489979 KANK4Q5T7N3 995 aaPredicted RBP22.16■■□□□ 1.14
VARS-227ENST00000489979 SCAF11Q99590 1463 aaKnown RBP22.15■■□□□ 1.14
VARS-227ENST00000489979 DUOX2Q9NRD8 1548 aa22.15■■□□□ 1.14
VARS-227ENST00000489979 LTKP29376 864 aa22.14■■□□□ 1.13
VARS-227ENST00000489979 MYOM3Q5VTT5 1437 aa22.14■■□□□ 1.13
VARS-227ENST00000489979 TXNDC2Q86VQ3 553 aa22.13■■□□□ 1.13
VARS-227ENST00000489979 ARHGAP23Q9P227 1491 aa22.12■■□□□ 1.13
VARS-227ENST00000489979 SLIT1O75093 1534 aa22.11■■□□□ 1.13
VARS-227ENST00000489979 ARHGAP31Q2M1Z3 1444 aa22.09■■□□□ 1.13
VARS-227ENST00000489979 XIRP1Q702N8 1843 aaKnown RBP22.09■■□□□ 1.13
VARS-227ENST00000489979 PRDM15P57071 1507 aaPredicted RBP22.09■■□□□ 1.13
VARS-227ENST00000489979 MAP3K1Q13233 1512 aa22.09■■□□□ 1.13
VARS-227ENST00000489979 KIF15Q9NS87 1388 aa22.09■■□□□ 1.13
VARS-227ENST00000489979 LOC105371045A0A1W2PR82 267 aa22.07■■□□□ 1.12
VARS-227ENST00000489979 EID1Q9Y6B2 187 aa22.07■■□□□ 1.12
VARS-227ENST00000489979 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.06■■□□□ 1.127e-11■■■□□ 14.8
VARS-227ENST00000489979 RRP7BPQ9NSQ0 103 aa22.06■■□□□ 1.12
VARS-227ENST00000489979 PIK3C2BO00750 1634 aa22.06■■□□□ 1.12
VARS-227ENST00000489979 ERBINQ96RT1 1412 aa22.06■■□□□ 1.12
VARS-227ENST00000489979 ABCC5O15440 1437 aa22.05■■□□□ 1.12
VARS-227ENST00000489979 CROCC2H7BZ55 1655 aa22.04■■□□□ 1.12
VARS-227ENST00000489979 TMEM2Q9UHN6 1383 aa22.03■■□□□ 1.12
VARS-227ENST00000489979 RGS17Q9UGC6 210 aaPredicted RBP22.02■■□□□ 1.12
VARS-227ENST00000489979 STAG3Q9UJ98 1225 aa22.02■■□□□ 1.12
VARS-227ENST00000489979 PTPN23Q9H3S7 1636 aa22■■□□□ 1.11
VARS-227ENST00000489979 KANK1Q14678 1352 aa21.99■■□□□ 1.11
VARS-227ENST00000489979 FAM135BQ49AJ0 1406 aa21.98■■□□□ 1.11
VARS-227ENST00000489979 DAPK1P53355 1430 aa21.97■■□□□ 1.11
VARS-227ENST00000489979 EFCAB6Q5THR3 1501 aa21.97■■□□□ 1.11
VARS-227ENST00000489979 IDI1Q13907 227 aa21.97■■□□□ 1.11
VARS-227ENST00000489979 KDM5AP29375 1690 aaKnown RBP21.97■■□□□ 1.11
VARS-227ENST00000489979 TMEM94Q12767 1356 aa21.97■■□□□ 1.11
VARS-227ENST00000489979 KCNA6P17658 529 aa21.95■■□□□ 1.1
VARS-227ENST00000489979 SLC26A8Q96RN1 970 aa21.94■■□□□ 1.1
VARS-227ENST00000489979 LMTK2Q8IWU2 1503 aa21.94■■□□□ 1.1
VARS-227ENST00000489979 RBM33Q96EV2 1170 aaKnown RBP21.93■■□□□ 1.1
VARS-227ENST00000489979 CHIC2Q9UKJ5 165 aa21.93■■□□□ 1.1
VARS-227ENST00000489979 TET3O43151 1660 aa21.92■■□□□ 1.1
VARS-227ENST00000489979 PROSER2Q86WR7 435 aaPredicted RBP21.92■■□□□ 1.1
VARS-227ENST00000489979 ROBO1Q9Y6N7 1651 aa21.91■■□□□ 1.1
VARS-227ENST00000489979 ANKRD30AQ9BXX3 1397 aa21.91■■□□□ 1.1
VARS-227ENST00000489979 FGD6Q6ZV73 1430 aa21.9■■□□□ 1.1
VARS-227ENST00000489979 APLP2Q06481 763 aa21.9■■□□□ 1.1
VARS-227ENST00000489979 ADGRB3O60242 1522 aa21.89■■□□□ 1.09
VARS-227ENST00000489979 NOS1P29475 1434 aa21.89■■□□□ 1.09
VARS-227ENST00000489979 POTEAQ6S8J7 498 aa21.88■■□□□ 1.09
VARS-227ENST00000489979 BCANQ96GW7 911 aa21.86■■□□□ 1.09
VARS-227ENST00000489979 NWD1Q149M9 1564 aa21.86■■□□□ 1.09
VARS-227ENST00000489979 NKTRP30414 1462 aaKnown RBP21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms