RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 DIP2CQ9Y2E4 1556 aa31.58■■■□□ 2.65
SMC4-221ENST00000489573 FAM135AQ9P2D6 1515 aa31.57■■■□□ 2.64
SMC4-221ENST00000489573 IQGAP3Q86VI3 1631 aa31.56■■■□□ 2.64
SMC4-221ENST00000489573 DEPDC5O75140 1603 aa31.56■■■□□ 2.64
SMC4-221ENST00000489573 SIN3AQ96ST3 1273 aa31.54■■■□□ 2.64
SMC4-221ENST00000489573 COL17A1Q9UMD9 1497 aaPredicted RBP31.53■■■□□ 2.64
SMC4-221ENST00000489573 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.52■■■□□ 2.642e-7■■■■■ 32.9
SMC4-221ENST00000489573 YEATS2Q9ULM3 1422 aa31.52■■■□□ 2.64
SMC4-221ENST00000489573 PKD2Q13563 968 aa31.51■■■□□ 2.63
SMC4-221ENST00000489573 FOXD1Q16676 465 aa31.51■■■□□ 2.63
SMC4-221ENST00000489573 KIF3BO15066 747 aa31.5■■■□□ 2.63
SMC4-221ENST00000489573 ANKRD30BQ9BXX2 1392 aa31.5■■■□□ 2.63
SMC4-221ENST00000489573 NEUROD1Q13562 356 aa31.48■■■□□ 2.63
SMC4-221ENST00000489573 BCORL1Q5H9F3 1711 aa31.47■■■□□ 2.63
SMC4-221ENST00000489573 PRDM15P57071 1507 aaPredicted RBP31.47■■■□□ 2.63
SMC4-221ENST00000489573 RNF17Q9BXT8 1623 aaKnown RBP31.46■■■□□ 2.63
SMC4-221ENST00000489573 MROH1Q8NDA8 1641 aa31.45■■■□□ 2.63
SMC4-221ENST00000489573 KANK1Q14678 1352 aa31.44■■■□□ 2.62
SMC4-221ENST00000489573 VWDEQ8N2E2 1590 aa31.44■■■□□ 2.62
SMC4-221ENST00000489573 TIMELESSQ9UNS1 1208 aa31.43■■■□□ 2.62
SMC4-221ENST00000489573 ATP10AO60312 1499 aa31.41■■■□□ 2.62
SMC4-221ENST00000489573 ARHGEF40Q8TER5 1519 aa31.39■■■□□ 2.62
SMC4-221ENST00000489573 REREQ9P2R6 1566 aa31.39■■■□□ 2.62
SMC4-221ENST00000489573 TONSLQ96HA7 1378 aa31.35■■■□□ 2.61
SMC4-221ENST00000489573 TET3O43151 1660 aa31.35■■■□□ 2.61
SMC4-221ENST00000489573 RPRD2Q5VT52 1461 aaKnown RBP31.34■■■□□ 2.61
SMC4-221ENST00000489573 LMTK2Q8IWU2 1503 aa31.31■■■□□ 2.6
SMC4-221ENST00000489573 AGLP35573 1532 aa31.3■■■□□ 2.6
SMC4-221ENST00000489573 GGT6Q6P531 493 aa31.29■■■□□ 2.6
SMC4-221ENST00000489573 E9PCH4 1651 aa31.28■■■□□ 2.6
SMC4-221ENST00000489573 EFCAB6Q5THR3 1501 aa31.25■■■□□ 2.59
SMC4-221ENST00000489573 CEP152O94986 1710 aa31.25■■■□□ 2.59
SMC4-221ENST00000489573 PLA2R1Q13018 1463 aa31.23■■■□□ 2.59
SMC4-221ENST00000489573 ABCC3O15438 1527 aa31.23■■■□□ 2.59
SMC4-221ENST00000489573 CCDC144AA2RUR9 1427 aa31.2■■■□□ 2.58
SMC4-221ENST00000489573 ZC3H13Q5T200 1668 aaKnown RBP31.19■■■□□ 2.58
SMC4-221ENST00000489573 WASHC2CQ9Y4E1 1318 aa31.18■■■□□ 2.58
SMC4-221ENST00000489573 PPP1R15AO75807 674 aaPredicted RBP31.17■■■□□ 2.58
SMC4-221ENST00000489573 AEBP2Q6ZN18 517 aaPredicted RBP31.17■■■□□ 2.58
SMC4-221ENST00000489573 SIGLEC1Q9BZZ2 1709 aa31.17■■■□□ 2.58
SMC4-221ENST00000489573 PTPRTO14522 1441 aa31.16■■■□□ 2.58
SMC4-221ENST00000489573 SPHKAPQ2M3C7 1700 aa31.16■■■□□ 2.58
SMC4-221ENST00000489573 TRPM2O94759 1503 aa31.15■■■□□ 2.58
SMC4-221ENST00000489573 CAMSAP1Q5T5Y3 1602 aa31.14■■■□□ 2.57
SMC4-221ENST00000489573 L3MBTL2Q969R5 705 aa31.13■■■□□ 2.57
SMC4-221ENST00000489573 PPP6R1Q9UPN7 881 aa31.1■■■□□ 2.57
SMC4-221ENST00000489573 NPATQ14207 1427 aa31.09■■■□□ 2.57
SMC4-221ENST00000489573 ARHGAP31Q2M1Z3 1444 aa31.07■■■□□ 2.56
SMC4-221ENST00000489573 CLTCL1P53675 1640 aa31.03■■■□□ 2.56
SMC4-221ENST00000489573 CNTLNQ9NXG0 1405 aa31■■■□□ 2.55
SMC4-221ENST00000489573 ARID4BQ4LE39 1312 aaPredicted RBP31■■■□□ 2.55
SMC4-221ENST00000489573 MLECQ14165 292 aa30.99■■■□□ 2.55
SMC4-221ENST00000489573 NOS1P29475 1434 aa30.96■■■□□ 2.55
SMC4-221ENST00000489573 CLTCQ00610 1675 aaKnown RBP30.96■■■□□ 2.55
SMC4-221ENST00000489573 SPATA31E1Q6ZUB1 1445 aa30.95■■■□□ 2.55
SMC4-221ENST00000489573 UGGT1Q9NYU2 1555 aa30.94■■■□□ 2.54
SMC4-221ENST00000489573 NEURL4Q96JN8 1562 aa30.92■■■□□ 2.54
SMC4-221ENST00000489573 ZNF316A6NFI3 1004 aaPredicted RBP30.9■■■□□ 2.54
SMC4-221ENST00000489573 RGL3Q3MIN7 710 aa30.89■■■□□ 2.54
SMC4-221ENST00000489573 PREX1Q8TCU6 1659 aa30.89■■■□□ 2.54
SMC4-221ENST00000489573 SYNMO15061 1565 aa30.89■■■□□ 2.53
SMC4-221ENST00000489573 UHRF1BP1Q6BDS2 1440 aa30.88■■■□□ 2.53
SMC4-221ENST00000489573 ESF1Q9H501 851 aaKnown RBP30.88■■■□□ 2.53
SMC4-221ENST00000489573 CFAP65Q6ZU64 1925 aaKnown RBP30.88■■■□□ 2.53
SMC4-221ENST00000489573 NBPF8Q3BBV2 869 aa30.88■■■□□ 2.53
SMC4-221ENST00000489573 DCAF11Q8TEB1 546 aa30.88■■■□□ 2.53
SMC4-221ENST00000489573 KDM4FA0A1W2PPD8 638 aa30.86■■■□□ 2.53
SMC4-221ENST00000489573 ERVK-7P63135 1459 aa30.85■■■□□ 2.53
SMC4-221ENST00000489573 KIF1BO60333 1816 aa30.85■■■□□ 2.53
SMC4-221ENST00000489573 PIK3C2BO00750 1634 aa30.85■■■□□ 2.53
SMC4-221ENST00000489573 KDM2AQ9Y2K7 1162 aa30.82■■■□□ 2.52
SMC4-221ENST00000489573 ADGRB3O60242 1522 aa30.82■■■□□ 2.52
SMC4-221ENST00000489573 ZNF326Q5BKZ1 582 aaKnown RBP30.79■■■□□ 2.52
SMC4-221ENST00000489573 ZMYM3Q14202 1370 aa30.79■■■□□ 2.52
SMC4-221ENST00000489573 SPATA31D1Q6ZQQ2 1576 aa30.79■■■□□ 2.52
SMC4-221ENST00000489573 MROH2AA6NES4 1674 aa30.79■■■□□ 2.52
SMC4-221ENST00000489573 SLC52A1Q9NWF4 448 aa30.78■■■□□ 2.52
SMC4-221ENST00000489573 FBXO31Q5XUX0 539 aaPredicted RBP30.77■■■□□ 2.52
SMC4-221ENST00000489573 PRAG1Q86YV5 1406 aa30.77■■■□□ 2.52
SMC4-221ENST00000489573 RALGAPBQ86X10 1494 aa30.75■■■□□ 2.51
SMC4-221ENST00000489573 STAC3Q96MF2 364 aa30.75■■■□□ 2.51
SMC4-221ENST00000489573 CHGAP10645 457 aaKnown RBP30.72■■■□□ 2.51
SMC4-221ENST00000489573 FER1L4A9Z1Z3 1794 aa30.72■■■□□ 2.51
SMC4-221ENST00000489573 IDI1Q13907 227 aa30.71■■■□□ 2.51
SMC4-221ENST00000489573 MYOM2P54296 1465 aa30.68■■■□□ 2.5
SMC4-221ENST00000489573 IFT172Q9UG01 1749 aa30.68■■■□□ 2.5
SMC4-221ENST00000489573 MADDQ8WXG6 1647 aa30.68■■■□□ 2.5
SMC4-221ENST00000489573 TRPM1Q7Z4N2 1603 aa30.67■■■□□ 2.5
SMC4-221ENST00000489573 RPGRIP1LQ68CZ1 1315 aa30.64■■■□□ 2.5
SMC4-221ENST00000489573 TMEM131LA2VDJ0 1609 aa30.63■■■□□ 2.49
SMC4-221ENST00000489573 EIF4G2P78344 907 aaKnown RBP eCLIP30.63■■■□□ 2.49
SMC4-221ENST00000489573 TNRQ92752 1358 aa30.62■■■□□ 2.49
SMC4-221ENST00000489573 PPLO60437 1756 aa30.61■■■□□ 2.49
SMC4-221ENST00000489573 ROCK2O75116 1388 aaKnown RBP30.6■■■□□ 2.49
SMC4-221ENST00000489573 C3P01024 1663 aa30.6■■■□□ 2.49
SMC4-221ENST00000489573 HSPA5P11021 654 aaKnown RBP30.59■■■□□ 2.49
SMC4-221ENST00000489573 NRXN1Q9ULB1 1477 aa30.58■■■□□ 2.49
SMC4-221ENST00000489573 NEXMIFQ5QGS0 1516 aa30.57■■■□□ 2.48
SMC4-221ENST00000489573 GPRASP1Q5JY77 1395 aa30.57■■■□□ 2.48
SMC4-221ENST00000489573 ADAMTSL3P82987 1691 aa30.56■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms