RNA–Protein interactions for RNA: ENST00000489406.1

UFD1-209, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 994 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-209ENST00000489406 LRRIQ1Q96JM4 1722 aa25.26■■□□□ 1.63
UFD1-209ENST00000489406 UPF1Q92900 1129 aaKnown RBP eCLIP25.26■■□□□ 1.63
UFD1-209ENST00000489406 CDC42BPAQ5VT25 1732 aa25.26■■□□□ 1.63
UFD1-209ENST00000489406 DEPDC5O75140 1603 aa25.24■■□□□ 1.63
UFD1-209ENST00000489406 SYNMO15061 1565 aa25.24■■□□□ 1.63
UFD1-209ENST00000489406 IQGAP1P46940 1657 aa25.23■■□□□ 1.63
UFD1-209ENST00000489406 INO80Q9ULG1 1556 aaPredicted RBP25.22■■□□□ 1.63
UFD1-209ENST00000489406 UGGT1Q9NYU2 1555 aa25.2■■□□□ 1.62
UFD1-209ENST00000489406 FAM135AQ9P2D6 1515 aa25.2■■□□□ 1.62
UFD1-209ENST00000489406 ARHGAP35Q9NRY4 1499 aa25.19■■□□□ 1.62
UFD1-209ENST00000489406 EEA1Q15075 1411 aa25.17■■□□□ 1.62
UFD1-209ENST00000489406 FAM135BQ49AJ0 1406 aa25.17■■□□□ 1.62
UFD1-209ENST00000489406 PZPP20742 1482 aa25.16■■□□□ 1.62
UFD1-209ENST00000489406 MIA2Q96PC5 1412 aa25.15■■□□□ 1.62
UFD1-209ENST00000489406 CHIC1Q5VXU3 224 aa25.15■■□□□ 1.62
UFD1-209ENST00000489406 EHMT2Q96KQ7 1210 aa25.15■■□□□ 1.62
UFD1-209ENST00000489406 NLRP1Q9C000 1473 aa25.14■■□□□ 1.61
UFD1-209ENST00000489406 ADGBQ8N7X0 1667 aa25.13■■□□□ 1.61
UFD1-209ENST00000489406 KIAA1107Q9UPP5 1409 aa25.12■■□□□ 1.61
UFD1-209ENST00000489406 GPATCH8Q9UKJ3 1502 aaKnown RBP25.11■■□□□ 1.61
UFD1-209ENST00000489406 UBTFP17480 764 aaKnown RBP25.1■■□□□ 1.61
UFD1-209ENST00000489406 TRIM52Q96A61 297 aa25.1■■□□□ 1.61
UFD1-209ENST00000489406 SRCAPQ6ZRS2 3230 aa25.08■■□□□ 1.61
UFD1-209ENST00000489406 WASHC2CQ9Y4E1 1318 aa25.08■■□□□ 1.6
UFD1-209ENST00000489406 XIRP1Q702N8 1843 aaKnown RBP25.07■■□□□ 1.6
UFD1-209ENST00000489406 KIF3BO15066 747 aa25.07■■□□□ 1.6
UFD1-209ENST00000489406 PLEKHH2Q8IVE3 1493 aa25.07■■□□□ 1.6
UFD1-209ENST00000489406 CFDP1Q9UEE9 299 aaPredicted RBP25.06■■□□□ 1.6
UFD1-209ENST00000489406 CCDC18Q5T9S5 1454 aa25.06■■□□□ 1.6
UFD1-209ENST00000489406 KDM5DQ9BY66 1539 aa25.06■■□□□ 1.6
UFD1-209ENST00000489406 ZC3H13Q5T200 1668 aaKnown RBP25.04■■□□□ 1.6
UFD1-209ENST00000489406 DHX29Q7Z478 1369 aaKnown RBP25.04■■□□□ 1.6
UFD1-209ENST00000489406 ROBO1Q9Y6N7 1651 aa25.02■■□□□ 1.6
UFD1-209ENST00000489406 CASKIN1Q8WXD9 1431 aa24.97■■□□□ 1.59
UFD1-209ENST00000489406 TMEM94Q12767 1356 aa24.95■■□□□ 1.59
UFD1-209ENST00000489406 JCADQ9P266 1359 aa24.95■■□□□ 1.59
UFD1-209ENST00000489406 ZNF772Q68DY9 489 aaPredicted RBP24.95■■□□□ 1.58
UFD1-209ENST00000489406 ZNF644Q9H582 1327 aaPredicted RBP24.94■■□□□ 1.58
UFD1-209ENST00000489406 LTKP29376 864 aa24.94■■□□□ 1.58
UFD1-209ENST00000489406 SCAF11Q99590 1463 aaKnown RBP24.94■■□□□ 1.58
UFD1-209ENST00000489406 RTEL1-TNFRSF6BF6WH68 1400 aa24.93■■□□□ 1.58
UFD1-209ENST00000489406 CCNB3Q8WWL7 1395 aa24.93■■□□□ 1.58
UFD1-209ENST00000489406 MEX3CQ5U5Q3 659 aaKnown RBP24.92■■□□□ 1.58
UFD1-209ENST00000489406 TXNDC2Q86VQ3 553 aa24.92■■□□□ 1.58
UFD1-209ENST00000489406 RBM33Q96EV2 1170 aaKnown RBP24.91■■□□□ 1.58
UFD1-209ENST00000489406 RXRBP28702 533 aa24.89■■□□□ 1.58
UFD1-209ENST00000489406 PHLPP1O60346 1717 aa24.89■■□□□ 1.57
UFD1-209ENST00000489406 MBD5Q9P267 1494 aa24.88■■□□□ 1.57
UFD1-209ENST00000489406 LRP6O75581 1613 aa24.87■■□□□ 1.57
UFD1-209ENST00000489406 LRRC9Q6ZRR7 1453 aa24.86■■□□□ 1.57
UFD1-209ENST00000489406 PROSER2Q86WR7 435 aaPredicted RBP24.86■■□□□ 1.57
UFD1-209ENST00000489406 UBR1Q8IWV7 1749 aa24.84■■□□□ 1.57
UFD1-209ENST00000489406 MAP3K1Q13233 1512 aa24.83■■□□□ 1.57
UFD1-209ENST00000489406 NCOA2Q15596 1464 aa24.83■■□□□ 1.56
UFD1-209ENST00000489406 ERVK-7P63135 1459 aa24.82■■□□□ 1.56
UFD1-209ENST00000489406 SLAIN2Q9P270 581 aa24.81■■□□□ 1.56
UFD1-209ENST00000489406 EID1Q9Y6B2 187 aa24.81■■□□□ 1.56
UFD1-209ENST00000489406 ARHGAP23Q9P227 1491 aa24.81■■□□□ 1.56
UFD1-209ENST00000489406 SPATA31A6Q5VVP1 1343 aa24.81■■□□□ 1.56
UFD1-209ENST00000489406 KCNA6P17658 529 aa24.8■■□□□ 1.56
UFD1-209ENST00000489406 SLIT1O75093 1534 aa24.79■■□□□ 1.56
UFD1-209ENST00000489406 CDK12Q9NYV4 1490 aaPredicted RBP24.77■■□□□ 1.56
UFD1-209ENST00000489406 FYCO1Q9BQS8 1478 aa24.77■■□□□ 1.56
UFD1-209ENST00000489406 COL16A1Q07092 1604 aaPredicted RBP24.76■■□□□ 1.55
UFD1-209ENST00000489406 ABCC3O15438 1527 aa24.76■■□□□ 1.55
UFD1-209ENST00000489406 MSH6P52701 1360 aa24.75■■□□□ 1.55
UFD1-209ENST00000489406 SLC26A8Q96RN1 970 aa24.72■■□□□ 1.55
UFD1-209ENST00000489406 CFAP65Q6ZU64 1925 aaKnown RBP24.72■■□□□ 1.55
UFD1-209ENST00000489406 PRDM15P57071 1507 aaPredicted RBP24.71■■□□□ 1.55
UFD1-209ENST00000489406 FGD6Q6ZV73 1430 aa24.71■■□□□ 1.55
UFD1-209ENST00000489406 CCDC141Q6ZP82 1450 aa24.7■■□□□ 1.54
UFD1-209ENST00000489406 MTUS2Q5JR59 1369 aa24.69■■□□□ 1.54
UFD1-209ENST00000489406 TIAM1Q13009 1591 aa24.69■■□□□ 1.54
UFD1-209ENST00000489406 ZRANB1Q9UGI0 708 aa24.69■■□□□ 1.54
UFD1-209ENST00000489406 NUTM2BA6NNL0 878 aaPredicted RBP24.68■■□□□ 1.54
UFD1-209ENST00000489406 NUTM2EB1AL46 878 aaPredicted RBP24.68■■□□□ 1.54
UFD1-209ENST00000489406 NUTM2DQ5VT03 806 aaPredicted RBP24.68■■□□□ 1.54
UFD1-209ENST00000489406 NUTM2AQ8IVF1 878 aaPredicted RBP24.68■■□□□ 1.54
UFD1-209ENST00000489406 TMEM2Q9UHN6 1383 aa24.67■■□□□ 1.54
UFD1-209ENST00000489406 RGS12O14924 1447 aa24.66■■□□□ 1.54
UFD1-209ENST00000489406 AFF2P51816 1311 aa24.65■■□□□ 1.54
UFD1-209ENST00000489406 NKTRP30414 1462 aaKnown RBP24.64■■□□□ 1.53
UFD1-209ENST00000489406 SETBP1Q9Y6X0 1596 aa24.63■■□□□ 1.53
UFD1-209ENST00000489406 STAG3Q9UJ98 1225 aa24.62■■□□□ 1.53
UFD1-209ENST00000489406 SHPRHQ149N8 1683 aa24.62■■□□□ 1.53
UFD1-209ENST00000489406 FOXD1Q16676 465 aa24.61■■□□□ 1.53
UFD1-209ENST00000489406 RSPH4AQ5TD94 716 aa24.61■■□□□ 1.53
UFD1-209ENST00000489406 TET3O43151 1660 aa24.59■■□□□ 1.53
UFD1-209ENST00000489406 CEP152O94986 1710 aa24.59■■□□□ 1.53
UFD1-209ENST00000489406 RBM6P78332 1123 aaKnown RBP24.59■■□□□ 1.53
UFD1-209ENST00000489406 NWD1Q149M9 1564 aa24.59■■□□□ 1.53
UFD1-209ENST00000489406 PIK3C2BO00750 1634 aa24.58■■□□□ 1.53
UFD1-209ENST00000489406 TSPY4P0CV99 314 aa24.58■■□□□ 1.53
UFD1-209ENST00000489406 TSPY10P0CW01 314 aa24.58■■□□□ 1.53
UFD1-209ENST00000489406 QTRT2Q9H974 415 aaKnown RBP24.58■■□□□ 1.53
UFD1-209ENST00000489406 BCANQ96GW7 911 aa24.56■■□□□ 1.52
UFD1-209ENST00000489406 CAMSAP2Q08AD1 1489 aa24.56■■□□□ 1.52
UFD1-209ENST00000489406 AHDC1Q5TGY3 1603 aaPredicted RBP24.54■■□□□ 1.52
UFD1-209ENST00000489406 MROH1Q8NDA8 1641 aa24.54■■□□□ 1.52
UFD1-209ENST00000489406 KDM5AP29375 1690 aaKnown RBP24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms