RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 EIF2AK4Q9P2K8 1649 aaKnown RBP35.98■■■■□ 3.35
COL9A3-213ENST00000489045 FGD6Q6ZV73 1430 aa35.97■■■■□ 3.35
COL9A3-213ENST00000489045 CEP170BQ9Y4F5 1589 aaPredicted RBP35.97■■■■□ 3.35
COL9A3-213ENST00000489045 CAMSAP1Q5T5Y3 1602 aa35.97■■■■□ 3.35
COL9A3-213ENST00000489045 FBXO41Q8TF61 875 aa35.96■■■■□ 3.35
COL9A3-213ENST00000489045 DMRT2Q9Y5R5 561 aa35.96■■■■□ 3.35
COL9A3-213ENST00000489045 NCOA1Q15788 1441 aa35.96■■■■□ 3.35
COL9A3-213ENST00000489045 SHANK2Q9UPX8 1470 aa35.94■■■■□ 3.34
COL9A3-213ENST00000489045 DNMT1P26358 1616 aaKnown RBP35.94■■■■□ 3.34
COL9A3-213ENST00000489045 TCOF1Q13428 1488 aaKnown RBP35.93■■■■□ 3.34
COL9A3-213ENST00000489045 ABCC5O15440 1437 aa35.92■■■■□ 3.34
COL9A3-213ENST00000489045 WASHC2CQ9Y4E1 1318 aa35.91■■■■□ 3.34
COL9A3-213ENST00000489045 DUOX2Q9NRD8 1548 aa35.91■■■■□ 3.34
COL9A3-213ENST00000489045 PZPP20742 1482 aa35.91■■■■□ 3.34
COL9A3-213ENST00000489045 PTPRTO14522 1441 aa35.9■■■■□ 3.34
COL9A3-213ENST00000489045 ZC3H13Q5T200 1668 aaKnown RBP35.89■■■■□ 3.34
COL9A3-213ENST00000489045 DAPK1P53355 1430 aa35.88■■■■□ 3.33
COL9A3-213ENST00000489045 MROH1Q8NDA8 1641 aa35.87■■■■□ 3.33
COL9A3-213ENST00000489045 ABCC3O15438 1527 aa35.84■■■■□ 3.33
COL9A3-213ENST00000489045 FBXO31Q5XUX0 539 aaPredicted RBP35.83■■■■□ 3.33
COL9A3-213ENST00000489045 CERKQ8TCT0 537 aa35.83■■■■□ 3.33
COL9A3-213ENST00000489045 KIF15Q9NS87 1388 aa35.83■■■■□ 3.33
COL9A3-213ENST00000489045 A2ML1A8K2U0 1454 aa35.83■■■■□ 3.33
COL9A3-213ENST00000489045 TNRQ92752 1358 aa35.82■■■■□ 3.32
COL9A3-213ENST00000489045 CEP152O94986 1710 aa35.82■■■■□ 3.32
COL9A3-213ENST00000489045 PLA2R1Q13018 1463 aa35.81■■■■□ 3.32
COL9A3-213ENST00000489045 ERBINQ96RT1 1412 aa35.77■■■■□ 3.32
COL9A3-213ENST00000489045 RRP7BPQ9NSQ0 103 aa35.76■■■■□ 3.32
COL9A3-213ENST00000489045 NCKAP5LQ9HCH0 1330 aa35.76■■■■□ 3.31
COL9A3-213ENST00000489045 PRDM15P57071 1507 aaPredicted RBP35.73■■■■□ 3.31
COL9A3-213ENST00000489045 DEPDC5O75140 1603 aa35.7■■■■□ 3.31
COL9A3-213ENST00000489045 POLR1AO95602 1720 aaPredicted RBP35.69■■■■□ 3.3
COL9A3-213ENST00000489045 SPATA31D1Q6ZQQ2 1576 aa35.69■■■■□ 3.3
COL9A3-213ENST00000489045 CHIC2Q9UKJ5 165 aa35.69■■■■□ 3.3
COL9A3-213ENST00000489045 NLRP1Q9C000 1473 aa35.68■■■■□ 3.3
COL9A3-213ENST00000489045 ANKRD30AQ9BXX3 1397 aa35.68■■■■□ 3.3
COL9A3-213ENST00000489045 CFAP65Q6ZU64 1925 aaKnown RBP35.68■■■■□ 3.3
COL9A3-213ENST00000489045 PKD2Q13563 968 aa35.68■■■■□ 3.3
COL9A3-213ENST00000489045 LTBP4Q8N2S1 1624 aa35.68■■■■□ 3.3
COL9A3-213ENST00000489045 FAM50AQ14320 339 aaKnown RBP35.65■■■■□ 3.3
COL9A3-213ENST00000489045 ERVK-7P63135 1459 aa35.65■■■■□ 3.3
COL9A3-213ENST00000489045 ADGRL2O95490 1459 aa35.63■■■■□ 3.29
COL9A3-213ENST00000489045 UGGT1Q9NYU2 1555 aa35.62■■■■□ 3.29
COL9A3-213ENST00000489045 NEURL4Q96JN8 1562 aa35.59■■■■□ 3.29
COL9A3-213ENST00000489045 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.56■■■■□ 3.282e-8■□□□□ 9.6
COL9A3-213ENST00000489045 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.54■■■■□ 3.282e-6■■□□□ 11.9
COL9A3-213ENST00000489045 ARHGAP31Q2M1Z3 1444 aa35.54■■■■□ 3.28
COL9A3-213ENST00000489045 KANK1Q14678 1352 aa35.53■■■■□ 3.28
COL9A3-213ENST00000489045 THEMISQ8N1K5 641 aaPredicted RBP35.53■■■■□ 3.28
COL9A3-213ENST00000489045 VWDEQ8N2E2 1590 aa35.52■■■■□ 3.28
COL9A3-213ENST00000489045 ZNF335Q9H4Z2 1342 aaPredicted RBP35.52■■■■□ 3.28
COL9A3-213ENST00000489045 UBR1Q8IWV7 1749 aa35.49■■■■□ 3.27
COL9A3-213ENST00000489045 LMTK2Q8IWU2 1503 aa35.49■■■■□ 3.27
COL9A3-213ENST00000489045 IQSEC2Q5JU85 1478 aa35.48■■■■□ 3.27
COL9A3-213ENST00000489045 ANKLE2Q86XL3 938 aa35.46■■■■□ 3.27
COL9A3-213ENST00000489045 ANKRD50Q9ULJ7 1429 aa35.44■■■■□ 3.26
COL9A3-213ENST00000489045 PPARGC1BQ86YN6 1023 aaKnown RBP35.44■■■■□ 3.26
COL9A3-213ENST00000489045 EFCAB6Q5THR3 1501 aa35.41■■■■□ 3.26
COL9A3-213ENST00000489045 MED14O60244 1454 aa35.41■■■■□ 3.26
COL9A3-213ENST00000489045 IQGAP1P46940 1657 aa35.4■■■■□ 3.26
COL9A3-213ENST00000489045 PIK3C2BO00750 1634 aa35.39■■■■□ 3.26
COL9A3-213ENST00000489045 NPHP4O75161 1426 aaPredicted RBP35.38■■■■□ 3.25
COL9A3-213ENST00000489045 SYNMO15061 1565 aa35.34■■■■□ 3.25
COL9A3-213ENST00000489045 ROCK1Q13464 1354 aa35.33■■■■□ 3.25
COL9A3-213ENST00000489045 UNC13BO14795 1591 aa35.33■■■■□ 3.25
COL9A3-213ENST00000489045 TET3O43151 1660 aa35.3■■■■□ 3.24
COL9A3-213ENST00000489045 SLIT1O75093 1534 aa35.3■■■■□ 3.24
COL9A3-213ENST00000489045 ARHGAP23Q9P227 1491 aa35.29■■■■□ 3.24
COL9A3-213ENST00000489045 KDM5AP29375 1690 aaKnown RBP35.29■■■■□ 3.24
COL9A3-213ENST00000489045 CPS1P31327 1500 aa35.28■■■■□ 3.24
COL9A3-213ENST00000489045 GCC2Q8IWJ2 1684 aa35.27■■■■□ 3.24
COL9A3-213ENST00000489045 NOS1P29475 1434 aa35.27■■■■□ 3.24
COL9A3-213ENST00000489045 SCAF11Q99590 1463 aaKnown RBP35.27■■■■□ 3.24
COL9A3-213ENST00000489045 ITGAEP38570 1179 aa35.25■■■■□ 3.23
COL9A3-213ENST00000489045 RPRD2Q5VT52 1461 aaKnown RBP35.23■■■■□ 3.23
COL9A3-213ENST00000489045 IDI1Q13907 227 aa35.2■■■■□ 3.23
COL9A3-213ENST00000489045 STRCP1A6NGW2 1772 aa35.2■■■■□ 3.23
COL9A3-213ENST00000489045 LTKP29376 864 aa35.19■■■■□ 3.22
COL9A3-213ENST00000489045 IQGAP3Q86VI3 1631 aa35.19■■■■□ 3.22
COL9A3-213ENST00000489045 STAG3Q9UJ98 1225 aa35.19■■■■□ 3.22
COL9A3-213ENST00000489045 ADGRB3O60242 1522 aa35.18■■■■□ 3.22
COL9A3-213ENST00000489045 TMEM2Q9UHN6 1383 aa35.17■■■■□ 3.22
COL9A3-213ENST00000489045 UBAP1LF5GYI3 381 aa35.17■■■■□ 3.22
COL9A3-213ENST00000489045 TXNDC2Q86VQ3 553 aa35.16■■■■□ 3.22
COL9A3-213ENST00000489045 E9PCH4 1651 aa35.16■■■■□ 3.22
COL9A3-213ENST00000489045 RRBP1Q9P2E9 1410 aaKnown RBP35.15■■■■□ 3.22
COL9A3-213ENST00000489045 EID1Q9Y6B2 187 aa35.14■■■■□ 3.22
COL9A3-213ENST00000489045 MYO5BQ9ULV0 1848 aa35.11■■■■□ 3.21
COL9A3-213ENST00000489045 SLC52A1Q9NWF4 448 aa35.1■■■■□ 3.21
COL9A3-213ENST00000489045 NUP155O75694 1391 aa35.05■■■■□ 3.2
COL9A3-213ENST00000489045 LRRC7Q96NW7 1537 aa35.03■■■■□ 3.2
COL9A3-213ENST00000489045 TMEM131LA2VDJ0 1609 aa35.03■■■■□ 3.2
COL9A3-213ENST00000489045 TOM1O60784 492 aa34.96■■■■□ 3.19
COL9A3-213ENST00000489045 ALKQ9UM73 1620 aa34.95■■■■□ 3.18
COL9A3-213ENST00000489045 ZFYVE9O95405 1425 aa34.94■■■■□ 3.18
COL9A3-213ENST00000489045 XIRP1Q702N8 1843 aaKnown RBP34.94■■■■□ 3.18
COL9A3-213ENST00000489045 SCAF1Q9H7N4 1312 aaKnown RBP34.93■■■■□ 3.18
COL9A3-213ENST00000489045 PIP4K2BP78356 416 aa34.92■■■■□ 3.18
COL9A3-213ENST00000489045 SPHKAPQ2M3C7 1700 aa34.92■■■■□ 3.18
COL9A3-213ENST00000489045 NAIPQ13075 1403 aa34.91■■■■□ 3.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms