RNA–Protein interactions for RNA: ENST00000488809.2

PTCH1-211, Transcript of patched 1, humanhuman

TSL 3

Gene PTCH1, Length 301 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-211ENST00000488809 CHIC1Q5VXU3 224 aa10.54□□□□□ -0.72
PTCH1-211ENST00000488809 MED1Q15648 1581 aaPredicted RBP10.53□□□□□ -0.72
PTCH1-211ENST00000488809 NEURL4Q96JN8 1562 aa10.52□□□□□ -0.72
PTCH1-211ENST00000488809 PZPP20742 1482 aa10.52□□□□□ -0.73
PTCH1-211ENST00000488809 DHX29Q7Z478 1369 aaKnown RBP10.52□□□□□ -0.73
PTCH1-211ENST00000488809 TNRQ92752 1358 aa10.52□□□□□ -0.73
PTCH1-211ENST00000488809 DEPDC5O75140 1603 aa10.51□□□□□ -0.73
PTCH1-211ENST00000488809 SHANK2Q9UPX8 1470 aa10.51□□□□□ -0.73
PTCH1-211ENST00000488809 CCDC141Q6ZP82 1450 aa10.5□□□□□ -0.73
PTCH1-211ENST00000488809 NLRP1Q9C000 1473 aa10.5□□□□□ -0.73
PTCH1-211ENST00000488809 MBD5Q9P267 1494 aa10.5□□□□□ -0.73
PTCH1-211ENST00000488809 PIP4K2BP78356 416 aa10.5□□□□□ -0.73
PTCH1-211ENST00000488809 IQGAP1P46940 1657 aa10.5□□□□□ -0.73
PTCH1-211ENST00000488809 ZC3H13Q5T200 1668 aaKnown RBP10.5□□□□□ -0.73
PTCH1-211ENST00000488809 UGGT1Q9NYU2 1555 aa10.49□□□□□ -0.73
PTCH1-211ENST00000488809 RSPH4AQ5TD94 716 aa10.49□□□□□ -0.73
PTCH1-211ENST00000488809 ANKLE2Q86XL3 938 aa10.49□□□□□ -0.73
PTCH1-211ENST00000488809 THEMISQ8N1K5 641 aaPredicted RBP10.49□□□□□ -0.73
PTCH1-211ENST00000488809 PHF23Q9BUL5 403 aaPredicted RBP10.49□□□□□ -0.73
PTCH1-211ENST00000488809 CEP162Q5TB80 1403 aa10.49□□□□□ -0.73
PTCH1-211ENST00000488809 SYNMO15061 1565 aa10.48□□□□□ -0.73
PTCH1-211ENST00000488809 KIF3BO15066 747 aa10.48□□□□□ -0.73
PTCH1-211ENST00000488809 HSPA1LP34931 641 aa10.48□□□□□ -0.73
PTCH1-211ENST00000488809 WASHC2CQ9Y4E1 1318 aa10.48□□□□□ -0.73
PTCH1-211ENST00000488809 VWDEQ8N2E2 1590 aa10.48□□□□□ -0.73
PTCH1-211ENST00000488809 RNF17Q9BXT8 1623 aaKnown RBP10.47□□□□□ -0.73
PTCH1-211ENST00000488809 MED14O60244 1454 aa10.47□□□□□ -0.73
PTCH1-211ENST00000488809 CAMSAP2Q08AD1 1489 aa10.47□□□□□ -0.73
PTCH1-211ENST00000488809 ZNF644Q9H582 1327 aaPredicted RBP10.46□□□□□ -0.73
PTCH1-211ENST00000488809 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.46□□□□□ -0.74
PTCH1-211ENST00000488809 NPHP4O75161 1426 aaPredicted RBP10.46□□□□□ -0.74
PTCH1-211ENST00000488809 MIA2Q96PC5 1412 aa10.46□□□□□ -0.74
PTCH1-211ENST00000488809 ARHGEF5Q12774 1597 aa10.46□□□□□ -0.74
PTCH1-211ENST00000488809 CFAP65Q6ZU64 1925 aaKnown RBP10.45□□□□□ -0.74
PTCH1-211ENST00000488809 EIF2AK4Q9P2K8 1649 aaKnown RBP10.44□□□□□ -0.74
PTCH1-211ENST00000488809 TSPY4P0CV99 314 aa10.44□□□□□ -0.74
PTCH1-211ENST00000488809 TSPY10P0CW01 314 aa10.44□□□□□ -0.74
PTCH1-211ENST00000488809 FBXO31Q5XUX0 539 aaPredicted RBP10.44□□□□□ -0.74
PTCH1-211ENST00000488809 NCOA2Q15596 1464 aa10.43□□□□□ -0.74
PTCH1-211ENST00000488809 STRCP1A6NGW2 1772 aa10.43□□□□□ -0.74
PTCH1-211ENST00000488809 MAST1Q9Y2H9 1570 aa10.42□□□□□ -0.74
PTCH1-211ENST00000488809 CEP152O94986 1710 aa10.41□□□□□ -0.74
PTCH1-211ENST00000488809 UBR1Q8IWV7 1749 aa10.41□□□□□ -0.74
PTCH1-211ENST00000488809 ALKQ9UM73 1620 aa10.4□□□□□ -0.74
PTCH1-211ENST00000488809 ABCC3O15438 1527 aa10.4□□□□□ -0.74
PTCH1-211ENST00000488809 LRRC7Q96NW7 1537 aa10.4□□□□□ -0.74
PTCH1-211ENST00000488809 ERVK-7P63135 1459 aa10.39□□□□□ -0.75
PTCH1-211ENST00000488809 XIRP1Q702N8 1843 aaKnown RBP10.37□□□□□ -0.75
PTCH1-211ENST00000488809 SCAF11Q99590 1463 aaKnown RBP10.37□□□□□ -0.75
PTCH1-211ENST00000488809 DUOX2Q9NRD8 1548 aa10.36□□□□□ -0.75
PTCH1-211ENST00000488809 MROH1Q8NDA8 1641 aa10.36□□□□□ -0.75
PTCH1-211ENST00000488809 KDM5AP29375 1690 aaKnown RBP10.35□□□□□ -0.75
PTCH1-211ENST00000488809 SLIT1O75093 1534 aa10.35□□□□□ -0.75
PTCH1-211ENST00000488809 SENP3Q9H4L4 574 aaPredicted RBP10.34□□□□□ -0.75
PTCH1-211ENST00000488809 EID1Q9Y6B2 187 aa10.34□□□□□ -0.75
PTCH1-211ENST00000488809 CROCC2H7BZ55 1655 aa10.34□□□□□ -0.75
PTCH1-211ENST00000488809 PRDM15P57071 1507 aaPredicted RBP10.33□□□□□ -0.76
PTCH1-211ENST00000488809 LRRC9Q6ZRR7 1453 aa10.33□□□□□ -0.76
PTCH1-211ENST00000488809 ARHGAP23Q9P227 1491 aa10.33□□□□□ -0.76
PTCH1-211ENST00000488809 PIK3C2BO00750 1634 aa10.33□□□□□ -0.76
PTCH1-211ENST00000488809 ARHGAP31Q2M1Z3 1444 aa10.33□□□□□ -0.76
PTCH1-211ENST00000488809 MYOM3Q5VTT5 1437 aa10.33□□□□□ -0.76
PTCH1-211ENST00000488809 TXNDC2Q86VQ3 553 aa10.32□□□□□ -0.76
PTCH1-211ENST00000488809 STAG3Q9UJ98 1225 aa10.31□□□□□ -0.76
PTCH1-211ENST00000488809 ERBINQ96RT1 1412 aa10.31□□□□□ -0.76
PTCH1-211ENST00000488809 KANK1Q14678 1352 aa10.3□□□□□ -0.76
PTCH1-211ENST00000488809 MAP3K1Q13233 1512 aa10.3□□□□□ -0.76
PTCH1-211ENST00000488809 ROBO1Q9Y6N7 1651 aa10.3□□□□□ -0.76
PTCH1-211ENST00000488809 FAM135BQ49AJ0 1406 aa10.3□□□□□ -0.76
PTCH1-211ENST00000488809 VPS8Q8N3P4 1428 aa10.3□□□□□ -0.76
PTCH1-211ENST00000488809 EFCAB6Q5THR3 1501 aa10.29□□□□□ -0.76
PTCH1-211ENST00000488809 KIF15Q9NS87 1388 aa10.28□□□□□ -0.76
PTCH1-211ENST00000488809 LTKP29376 864 aa10.28□□□□□ -0.76
PTCH1-211ENST00000488809 TMEM2Q9UHN6 1383 aa10.27□□□□□ -0.76
PTCH1-211ENST00000488809 PHLPP1O60346 1717 aa10.27□□□□□ -0.77
PTCH1-211ENST00000488809 PTPN23Q9H3S7 1636 aa10.26□□□□□ -0.77
PTCH1-211ENST00000488809 NKTRP30414 1462 aaKnown RBP10.26□□□□□ -0.77
PTCH1-211ENST00000488809 RGS17Q9UGC6 210 aaPredicted RBP10.26□□□□□ -0.77
PTCH1-211ENST00000488809 NWD1Q149M9 1564 aa10.26□□□□□ -0.77
PTCH1-211ENST00000488809 TMEM94Q12767 1356 aa10.26□□□□□ -0.77
PTCH1-211ENST00000488809 ADGRB3O60242 1522 aa10.25□□□□□ -0.77
PTCH1-211ENST00000488809 LMTK2Q8IWU2 1503 aa10.25□□□□□ -0.77
PTCH1-211ENST00000488809 KCNA6P17658 529 aa10.25□□□□□ -0.77
PTCH1-211ENST00000488809 MSH6P52701 1360 aa10.25□□□□□ -0.77
PTCH1-211ENST00000488809 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.24□□□□□ -0.77
PTCH1-211ENST00000488809 TET3O43151 1660 aa10.24□□□□□ -0.77
PTCH1-211ENST00000488809 CHD2O14647 1828 aaKnown RBP10.23□□□□□ -0.77
PTCH1-211ENST00000488809 PROSER2Q86WR7 435 aaPredicted RBP10.23□□□□□ -0.77
PTCH1-211ENST00000488809 RRP7BPQ9NSQ0 103 aa10.23□□□□□ -0.77
PTCH1-211ENST00000488809 SETD1AO15047 1707 aaKnown RBP10.23□□□□□ -0.77
PTCH1-211ENST00000488809 MYO5BQ9ULV0 1848 aa10.23□□□□□ -0.77
PTCH1-211ENST00000488809 BCANQ96GW7 911 aa10.22□□□□□ -0.77
PTCH1-211ENST00000488809 ANKRD30AQ9BXX3 1397 aa10.22□□□□□ -0.77
PTCH1-211ENST00000488809 ABCC5O15440 1437 aa10.22□□□□□ -0.77
PTCH1-211ENST00000488809 DAPK1P53355 1430 aa10.22□□□□□ -0.77
PTCH1-211ENST00000488809 GCC2Q8IWJ2 1684 aa10.22□□□□□ -0.77
PTCH1-211ENST00000488809 APLP2Q06481 763 aa10.21□□□□□ -0.77
PTCH1-211ENST00000488809 IDI1Q13907 227 aa10.21□□□□□ -0.77
PTCH1-211ENST00000488809 SLC52A1Q9NWF4 448 aa10.21□□□□□ -0.77
PTCH1-211ENST00000488809 JCADQ9P266 1359 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms