RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 MYO3AQ8NEV4 1616 aa19.29■□□□□ 0.68
SDC3-204ENST00000487984 FAM135AQ9P2D6 1515 aa19.29■□□□□ 0.68
SDC3-204ENST00000487984 WASHC2CQ9Y4E1 1318 aa19.28■□□□□ 0.68
SDC3-204ENST00000487984 CEP170BQ9Y4F5 1589 aaPredicted RBP19.27■□□□□ 0.67
SDC3-204ENST00000487984 ZNF142P52746 1687 aaPredicted RBP19.27■□□□□ 0.67
SDC3-204ENST00000487984 FBXO31Q5XUX0 539 aaPredicted RBP19.26■□□□□ 0.67
SDC3-204ENST00000487984 PZPP20742 1482 aa19.26■□□□□ 0.67
SDC3-204ENST00000487984 NCKAP5LQ9HCH0 1330 aa19.25■□□□□ 0.67
SDC3-204ENST00000487984 ABCC5O15440 1437 aa19.24■□□□□ 0.67
SDC3-204ENST00000487984 A2ML1A8K2U0 1454 aa19.23■□□□□ 0.67
SDC3-204ENST00000487984 PLA2R1Q13018 1463 aa19.23■□□□□ 0.67
SDC3-204ENST00000487984 TNRQ92752 1358 aa19.23■□□□□ 0.67
SDC3-204ENST00000487984 PTPN23Q9H3S7 1636 aa19.23■□□□□ 0.67
SDC3-204ENST00000487984 FGD6Q6ZV73 1430 aa19.23■□□□□ 0.67
SDC3-204ENST00000487984 RNF17Q9BXT8 1623 aaKnown RBP19.22■□□□□ 0.67
SDC3-204ENST00000487984 SHANK2Q9UPX8 1470 aa19.22■□□□□ 0.67
SDC3-204ENST00000487984 TCOF1Q13428 1488 aaKnown RBP19.21■□□□□ 0.67
SDC3-204ENST00000487984 PKD2Q13563 968 aa19.2■□□□□ 0.66
SDC3-204ENST00000487984 EIF2AK4Q9P2K8 1649 aaKnown RBP19.2■□□□□ 0.66
SDC3-204ENST00000487984 ABCC3O15438 1527 aa19.2■□□□□ 0.66
SDC3-204ENST00000487984 DUOX2Q9NRD8 1548 aa19.2■□□□□ 0.66
SDC3-204ENST00000487984 KIF15Q9NS87 1388 aa19.19■□□□□ 0.66
SDC3-204ENST00000487984 DAPK1P53355 1430 aa19.19■□□□□ 0.66
SDC3-204ENST00000487984 DNMT1P26358 1616 aaKnown RBP19.18■□□□□ 0.66
SDC3-204ENST00000487984 LTBP4Q8N2S1 1624 aa19.18■□□□□ 0.66
SDC3-204ENST00000487984 MROH1Q8NDA8 1641 aa19.18■□□□□ 0.66
SDC3-204ENST00000487984 RRP7BPQ9NSQ0 103 aa19.17■□□□□ 0.66
SDC3-204ENST00000487984 CROCC2H7BZ55 1655 aa19.17■□□□□ 0.66
SDC3-204ENST00000487984 ERBINQ96RT1 1412 aa19.15■□□□□ 0.66
SDC3-204ENST00000487984 ZC3H13Q5T200 1668 aaKnown RBP19.14■□□□□ 0.66
SDC3-204ENST00000487984 NLRP1Q9C000 1473 aa19.14■□□□□ 0.65
SDC3-204ENST00000487984 ZNF335Q9H4Z2 1342 aaPredicted RBP19.13■□□□□ 0.65
SDC3-204ENST00000487984 CHIC2Q9UKJ5 165 aa19.12■□□□□ 0.65
SDC3-204ENST00000487984 SPATA31D1Q6ZQQ2 1576 aa19.11■□□□□ 0.65
SDC3-204ENST00000487984 ERVK-7P63135 1459 aa19.11■□□□□ 0.65
SDC3-204ENST00000487984 PRDM15P57071 1507 aaPredicted RBP19.1■□□□□ 0.65
SDC3-204ENST00000487984 ANKRD30AQ9BXX3 1397 aa19.1■□□□□ 0.65
SDC3-204ENST00000487984 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.1■□□□□ 0.65
SDC3-204ENST00000487984 UGGT1Q9NYU2 1555 aa19.1■□□□□ 0.65
SDC3-204ENST00000487984 THEMISQ8N1K5 641 aaPredicted RBP19.09■□□□□ 0.65
SDC3-204ENST00000487984 IQSEC2Q5JU85 1478 aa19.09■□□□□ 0.65
SDC3-204ENST00000487984 CEP152O94986 1710 aa19.08■□□□□ 0.64
SDC3-204ENST00000487984 NEURL4Q96JN8 1562 aa19.07■□□□□ 0.64
SDC3-204ENST00000487984 FAM50AQ14320 339 aaKnown RBP19.07■□□□□ 0.64
SDC3-204ENST00000487984 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.07■□□□□ 0.64
SDC3-204ENST00000487984 ANKLE2Q86XL3 938 aa19.06■□□□□ 0.64
SDC3-204ENST00000487984 ARHGAP31Q2M1Z3 1444 aa19.06■□□□□ 0.64
SDC3-204ENST00000487984 ADGRL2O95490 1459 aa19.04■□□□□ 0.64
SDC3-204ENST00000487984 DEPDC5O75140 1603 aa19.04■□□□□ 0.64
SDC3-204ENST00000487984 POLR1AO95602 1720 aaPredicted RBP19.04■□□□□ 0.64
SDC3-204ENST00000487984 KANK1Q14678 1352 aa19.03■□□□□ 0.64
SDC3-204ENST00000487984 MED14O60244 1454 aa19.01■□□□□ 0.63
SDC3-204ENST00000487984 NPHP4O75161 1426 aaPredicted RBP19■□□□□ 0.63
SDC3-204ENST00000487984 VWDEQ8N2E2 1590 aa19■□□□□ 0.63
SDC3-204ENST00000487984 LMTK2Q8IWU2 1503 aa19■□□□□ 0.63
SDC3-204ENST00000487984 ANKRD50Q9ULJ7 1429 aa18.97■□□□□ 0.63
SDC3-204ENST00000487984 CFAP65Q6ZU64 1925 aaKnown RBP18.96■□□□□ 0.63
SDC3-204ENST00000487984 UBR1Q8IWV7 1749 aa18.95■□□□□ 0.62
SDC3-204ENST00000487984 UBAP1LF5GYI3 381 aa18.95■□□□□ 0.62
SDC3-204ENST00000487984 CPS1P31327 1500 aa18.95■□□□□ 0.62
SDC3-204ENST00000487984 IQGAP1P46940 1657 aa18.93■□□□□ 0.62
SDC3-204ENST00000487984 ARHGAP23Q9P227 1491 aa18.93■□□□□ 0.62
SDC3-204ENST00000487984 PPARGC1BQ86YN6 1023 aaKnown RBP18.93■□□□□ 0.62
SDC3-204ENST00000487984 EFCAB6Q5THR3 1501 aa18.93■□□□□ 0.62
SDC3-204ENST00000487984 SCAF11Q99590 1463 aaKnown RBP18.92■□□□□ 0.62
SDC3-204ENST00000487984 SLIT1O75093 1534 aa18.92■□□□□ 0.62
SDC3-204ENST00000487984 LTKP29376 864 aa18.92■□□□□ 0.62
SDC3-204ENST00000487984 NOS1P29475 1434 aa18.91■□□□□ 0.62
SDC3-204ENST00000487984 PIK3C2BO00750 1634 aa18.9■□□□□ 0.62
SDC3-204ENST00000487984 IDI1Q13907 227 aa18.9■□□□□ 0.62
SDC3-204ENST00000487984 TXNDC2Q86VQ3 553 aa18.9■□□□□ 0.62
SDC3-204ENST00000487984 ROCK1Q13464 1354 aa18.9■□□□□ 0.62
SDC3-204ENST00000487984 SYNMO15061 1565 aa18.89■□□□□ 0.62
SDC3-204ENST00000487984 TMEM2Q9UHN6 1383 aa18.89■□□□□ 0.61
SDC3-204ENST00000487984 STAG3Q9UJ98 1225 aa18.88■□□□□ 0.61
SDC3-204ENST00000487984 EID1Q9Y6B2 187 aa18.87■□□□□ 0.61
SDC3-204ENST00000487984 RPRD2Q5VT52 1461 aaKnown RBP18.86■□□□□ 0.61
SDC3-204ENST00000487984 ITGAEP38570 1179 aa18.85■□□□□ 0.61
SDC3-204ENST00000487984 SLC52A1Q9NWF4 448 aa18.84■□□□□ 0.61
SDC3-204ENST00000487984 UNC13BO14795 1591 aa18.84■□□□□ 0.61
SDC3-204ENST00000487984 ADGRB3O60242 1522 aa18.83■□□□□ 0.6
SDC3-204ENST00000487984 TET3O43151 1660 aa18.82■□□□□ 0.6
SDC3-204ENST00000487984 KDM5AP29375 1690 aaKnown RBP18.82■□□□□ 0.6
SDC3-204ENST00000487984 TOM1O60784 492 aa18.82■□□□□ 0.6
SDC3-204ENST00000487984 LRRC7Q96NW7 1537 aa18.82■□□□□ 0.6
SDC3-204ENST00000487984 STRCP1A6NGW2 1772 aa18.82■□□□□ 0.6
SDC3-204ENST00000487984 DISP3Q9P2K9 1392 aa18.81■□□□□ 0.6
SDC3-204ENST00000487984 PIP4K2BP78356 416 aa18.81■□□□□ 0.6
SDC3-204ENST00000487984 SCAF1Q9H7N4 1312 aaKnown RBP18.8■□□□□ 0.6
SDC3-204ENST00000487984 ALKQ9UM73 1620 aa18.78■□□□□ 0.6
SDC3-204ENST00000487984 GCC2Q8IWJ2 1684 aa18.77■□□□□ 0.6
SDC3-204ENST00000487984 NUP155O75694 1391 aa18.77■□□□□ 0.6
SDC3-204ENST00000487984 RRBP1Q9P2E9 1410 aaKnown RBP18.76■□□□□ 0.59
SDC3-204ENST00000487984 IQGAP3Q86VI3 1631 aa18.76■□□□□ 0.59
SDC3-204ENST00000487984 HSPA1LP34931 641 aa18.75■□□□□ 0.59
SDC3-204ENST00000487984 E9PCH4 1651 aa18.74■□□□□ 0.59
SDC3-204ENST00000487984 SLC26A8Q96RN1 970 aa18.74■□□□□ 0.59
SDC3-204ENST00000487984 ZFYVE9O95405 1425 aa18.74■□□□□ 0.59
SDC3-204ENST00000487984 RIMS2Q9UQ26 1411 aa18.72■□□□□ 0.59
SDC3-204ENST00000487984 TMEM131LA2VDJ0 1609 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms