RNA–Protein interactions for RNA: ENST00000487244.5

UBE4B-209, Transcript of ubiquitination factor E4B, humanhuman

TSL 1 (best)

Gene UBE4B, Length 818 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-209ENST00000487244 RIMS1Q86UR5 1692 aaKnown RBP11.3□□□□□ -0.6
UBE4B-209ENST00000487244 MBD5Q9P267 1494 aa11.29□□□□□ -0.6
UBE4B-209ENST00000487244 ATP7AQ04656 1500 aa11.29□□□□□ -0.6
UBE4B-209ENST00000487244 FER1L4A9Z1Z3 1794 aa11.28□□□□□ -0.6
UBE4B-209ENST00000487244 REREQ9P2R6 1566 aa11.28□□□□□ -0.6
UBE4B-209ENST00000487244 CHRDL2Q6WN34 429 aa11.27□□□□□ -0.61
UBE4B-209ENST00000487244 MYT1LQ9UL68 1186 aa11.27□□□□□ -0.61
UBE4B-209ENST00000487244 MYOM3Q5VTT5 1437 aa11.26□□□□□ -0.61
UBE4B-209ENST00000487244 PTPRMP28827 1452 aa11.26□□□□□ -0.61
UBE4B-209ENST00000487244 SPDYE1Q8NFV5 336 aaPredicted RBP11.26□□□□□ -0.61
UBE4B-209ENST00000487244 ADGBQ8N7X0 1667 aa11.25□□□□□ -0.61
UBE4B-209ENST00000487244 PITPNM1O00562 1244 aa11.25□□□□□ -0.61
UBE4B-209ENST00000487244 MLECQ14165 292 aa11.25□□□□□ -0.61
UBE4B-209ENST00000487244 SPAG9O60271 1321 aaKnown RBP11.25□□□□□ -0.61
UBE4B-209ENST00000487244 CCDC141Q6ZP82 1450 aa11.24□□□□□ -0.61
UBE4B-209ENST00000487244 PLXNC1O60486 1568 aa11.24□□□□□ -0.61
UBE4B-209ENST00000487244 ARHGEF5Q12774 1597 aa11.24□□□□□ -0.61
UBE4B-209ENST00000487244 CLEC11AQ9Y240 323 aa11.23□□□□□ -0.61
UBE4B-209ENST00000487244 AGLP35573 1532 aa11.23□□□□□ -0.61
UBE4B-209ENST00000487244 PTPN23Q9H3S7 1636 aa11.23□□□□□ -0.61
UBE4B-209ENST00000487244 FKBP8Q14318 412 aa11.22□□□□□ -0.61
UBE4B-209ENST00000487244 CROCC2H7BZ55 1655 aa11.21□□□□□ -0.61
UBE4B-209ENST00000487244 MIA2Q96PC5 1412 aa11.21□□□□□ -0.61
UBE4B-209ENST00000487244 A2MP01023 1474 aa11.2□□□□□ -0.62
UBE4B-209ENST00000487244 FGD6Q6ZV73 1430 aa11.19□□□□□ -0.62
UBE4B-209ENST00000487244 RTEL1-TNFRSF6BF6WH68 1400 aa11.18□□□□□ -0.62
UBE4B-209ENST00000487244 MAST1Q9Y2H9 1570 aa11.18□□□□□ -0.62
UBE4B-209ENST00000487244 C3P01024 1663 aa11.17□□□□□ -0.62
UBE4B-209ENST00000487244 DNMT1P26358 1616 aaKnown RBP11.17□□□□□ -0.62
UBE4B-209ENST00000487244 TCOF1Q13428 1488 aaKnown RBP11.17□□□□□ -0.62
UBE4B-209ENST00000487244 PPARGC1BQ86YN6 1023 aaKnown RBP11.16□□□□□ -0.62
UBE4B-209ENST00000487244 CLTCQ00610 1675 aaKnown RBP11.16□□□□□ -0.62
UBE4B-209ENST00000487244 CEBPAP49715 358 aaPredicted RBP11.15□□□□□ -0.62
UBE4B-209ENST00000487244 ABCC5O15440 1437 aa11.15□□□□□ -0.62
UBE4B-209ENST00000487244 LMTK3Q96Q04 1460 aa11.14□□□□□ -0.63
UBE4B-209ENST00000487244 DAPK1P53355 1430 aa11.14□□□□□ -0.63
UBE4B-209ENST00000487244 DHX29Q7Z478 1369 aaKnown RBP11.14□□□□□ -0.63
UBE4B-209ENST00000487244 MROH2AA6NES4 1674 aa11.14□□□□□ -0.63
UBE4B-209ENST00000487244 SHANK2Q9UPX8 1470 aa11.13□□□□□ -0.63
UBE4B-209ENST00000487244 RSPH4AQ5TD94 716 aa11.13□□□□□ -0.63
UBE4B-209ENST00000487244 STAG3Q9UJ98 1225 aa11.13□□□□□ -0.63
UBE4B-209ENST00000487244 PREX1Q8TCU6 1659 aa11.12□□□□□ -0.63
UBE4B-209ENST00000487244 TSPY4P0CV99 314 aa11.12□□□□□ -0.63
UBE4B-209ENST00000487244 TSPY10P0CW01 314 aa11.12□□□□□ -0.63
UBE4B-209ENST00000487244 RNF17Q9BXT8 1623 aaKnown RBP11.11□□□□□ -0.63
UBE4B-209ENST00000487244 PRR29P0C7W0 189 aa11.11□□□□□ -0.63
UBE4B-209ENST00000487244 GGT6Q6P531 493 aa11.11□□□□□ -0.63
UBE4B-209ENST00000487244 POTEHQ6S545 545 aa11.11□□□□□ -0.63
UBE4B-209ENST00000487244 MROH1Q8NDA8 1641 aa11.1□□□□□ -0.63
UBE4B-209ENST00000487244 EIF2AK4Q9P2K8 1649 aaKnown RBP11.1□□□□□ -0.63
UBE4B-209ENST00000487244 PROM2Q8N271 834 aa11.1□□□□□ -0.63
UBE4B-209ENST00000487244 CNTLNQ9NXG0 1405 aa11.09□□□□□ -0.63
UBE4B-209ENST00000487244 SETD1BQ9UPS6 1966 aaKnown RBP11.09□□□□□ -0.63
UBE4B-209ENST00000487244 KIF3BO15066 747 aa11.09□□□□□ -0.63
UBE4B-209ENST00000487244 FAM50AQ14320 339 aaKnown RBP11.09□□□□□ -0.63
UBE4B-209ENST00000487244 DUOX2Q9NRD8 1548 aa11.09□□□□□ -0.63
UBE4B-209ENST00000487244 KIF15Q9NS87 1388 aa11.08□□□□□ -0.64
UBE4B-209ENST00000487244 CEP152O94986 1710 aa11.08□□□□□ -0.64
UBE4B-209ENST00000487244 KDM5DQ9BY66 1539 aa11.08□□□□□ -0.64
UBE4B-209ENST00000487244 ZMYM3Q14202 1370 aa11.07□□□□□ -0.64
UBE4B-209ENST00000487244 FXR2P51116 673 aaKnown RBP eCLIP11.07□□□□□ -0.64
UBE4B-209ENST00000487244 HSPA2P54652 639 aa11.07□□□□□ -0.64
UBE4B-209ENST00000487244 PIP4P2Q8N4L2 257 aa11.07□□□□□ -0.64
UBE4B-209ENST00000487244 ESF1Q9H501 851 aaKnown RBP11.07□□□□□ -0.64
UBE4B-209ENST00000487244 CHIC2Q9UKJ5 165 aa11.07□□□□□ -0.64
UBE4B-209ENST00000487244 PTPRKQ15262 1439 aa11.07□□□□□ -0.64
UBE4B-209ENST00000487244 RRP7BPQ9NSQ0 103 aa11.06□□□□□ -0.64
UBE4B-209ENST00000487244 ADGRL2O95490 1459 aa11.06□□□□□ -0.64
UBE4B-209ENST00000487244 MYO3AQ8NEV4 1616 aa11.06□□□□□ -0.64
UBE4B-209ENST00000487244 NCOA1Q15788 1441 aa11.05□□□□□ -0.64
UBE4B-209ENST00000487244 DEPDC5O75140 1603 aa11.05□□□□□ -0.64
UBE4B-209ENST00000487244 ZC3H13Q5T200 1668 aaKnown RBP11.04□□□□□ -0.64
UBE4B-209ENST00000487244 ABCC3O15438 1527 aa11.04□□□□□ -0.64
UBE4B-209ENST00000487244 PRDM15P57071 1507 aaPredicted RBP11.04□□□□□ -0.64
UBE4B-209ENST00000487244 FAM135AQ9P2D6 1515 aa11.04□□□□□ -0.64
UBE4B-209ENST00000487244 CFAP65Q6ZU64 1925 aaKnown RBP11.04□□□□□ -0.64
UBE4B-209ENST00000487244 ERBINQ96RT1 1412 aa11.04□□□□□ -0.64
UBE4B-209ENST00000487244 ANKRD30AQ9BXX3 1397 aa11.03□□□□□ -0.64
UBE4B-209ENST00000487244 NPATQ14207 1427 aa11.03□□□□□ -0.64
UBE4B-209ENST00000487244 UHRF1BP1Q6BDS2 1440 aa11.03□□□□□ -0.64
UBE4B-209ENST00000487244 CAMSAP1Q5T5Y3 1602 aa11.03□□□□□ -0.64
UBE4B-209ENST00000487244 ZNF142P52746 1687 aaPredicted RBP11.03□□□□□ -0.64
UBE4B-209ENST00000487244 STRCQ7RTU9 1775 aa11.03□□□□□ -0.64
UBE4B-209ENST00000487244 PZPP20742 1482 aa11.01□□□□□ -0.65
UBE4B-209ENST00000487244 WASHC2CQ9Y4E1 1318 aa11.01□□□□□ -0.65
UBE4B-209ENST00000487244 RRBP1Q9P2E9 1410 aaKnown RBP11.01□□□□□ -0.65
UBE4B-209ENST00000487244 CEP170BQ9Y4F5 1589 aaPredicted RBP11□□□□□ -0.65
UBE4B-209ENST00000487244 ITGAEP38570 1179 aa11□□□□□ -0.65
UBE4B-209ENST00000487244 FBXO31Q5XUX0 539 aaPredicted RBP11□□□□□ -0.65
UBE4B-209ENST00000487244 VWDEQ8N2E2 1590 aa10.99□□□□□ -0.65
UBE4B-209ENST00000487244 PRKAR2AP13861 404 aaKnown RBP10.99□□□□□ -0.65
UBE4B-209ENST00000487244 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.99□□□□□ -0.65
UBE4B-209ENST00000487244 ANKRD50Q9ULJ7 1429 aa10.98□□□□□ -0.65
UBE4B-209ENST00000487244 ROCK1Q13464 1354 aa10.97□□□□□ -0.65
UBE4B-209ENST00000487244 TNRQ92752 1358 aa10.97□□□□□ -0.65
UBE4B-209ENST00000487244 SPATA31D1Q6ZQQ2 1576 aa10.97□□□□□ -0.65
UBE4B-209ENST00000487244 UNC13BO14795 1591 aa10.96□□□□□ -0.65
UBE4B-209ENST00000487244 ERVK-7P63135 1459 aa10.96□□□□□ -0.65
UBE4B-209ENST00000487244 A2ML1A8K2U0 1454 aa10.95□□□□□ -0.66
UBE4B-209ENST00000487244 EFCAB6Q5THR3 1501 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms