RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 MIA2Q96PC5 1412 aa11.01□□□□□ -0.65
VPS50-218ENST00000485994 RIMS1Q86UR5 1692 aaKnown RBP11□□□□□ -0.65
VPS50-218ENST00000485994 FER1L4A9Z1Z3 1794 aa10.99□□□□□ -0.65
VPS50-218ENST00000485994 TSPY4P0CV99 314 aa10.99□□□□□ -0.65
VPS50-218ENST00000485994 TSPY10P0CW01 314 aa10.99□□□□□ -0.65
VPS50-218ENST00000485994 ATP7AQ04656 1500 aa10.99□□□□□ -0.65
VPS50-218ENST00000485994 DHX29Q7Z478 1369 aaKnown RBP10.98□□□□□ -0.65
VPS50-218ENST00000485994 CNTLNQ9NXG0 1405 aa10.98□□□□□ -0.65
VPS50-218ENST00000485994 A2MP01023 1474 aa10.98□□□□□ -0.65
VPS50-218ENST00000485994 INO80Q9ULG1 1556 aaPredicted RBP10.98□□□□□ -0.65
VPS50-218ENST00000485994 PITPNM1O00562 1244 aa10.97□□□□□ -0.65
VPS50-218ENST00000485994 ESF1Q9H501 851 aaKnown RBP10.97□□□□□ -0.65
VPS50-218ENST00000485994 ARHGEF5Q12774 1597 aa10.96□□□□□ -0.65
VPS50-218ENST00000485994 CAMSAP2Q08AD1 1489 aa10.96□□□□□ -0.65
VPS50-218ENST00000485994 CCDC141Q6ZP82 1450 aa10.96□□□□□ -0.65
VPS50-218ENST00000485994 MYOM3Q5VTT5 1437 aa10.96□□□□□ -0.65
VPS50-218ENST00000485994 HAX1O00165 279 aa10.96□□□□□ -0.65
VPS50-218ENST00000485994 ADGBQ8N7X0 1667 aa10.95□□□□□ -0.66
VPS50-218ENST00000485994 PLXNC1O60486 1568 aa10.95□□□□□ -0.66
VPS50-218ENST00000485994 LMTK3Q96Q04 1460 aa10.95□□□□□ -0.66
VPS50-218ENST00000485994 CEBPAP49715 358 aaPredicted RBP10.95□□□□□ -0.66
VPS50-218ENST00000485994 EVX2Q03828 476 aa10.95□□□□□ -0.66
VPS50-218ENST00000485994 ZMYM3Q14202 1370 aa10.93□□□□□ -0.66
VPS50-218ENST00000485994 GGT6Q6P531 493 aa10.92□□□□□ -0.66
VPS50-218ENST00000485994 MAST1Q9Y2H9 1570 aa10.91□□□□□ -0.66
VPS50-218ENST00000485994 MROH2AA6NES4 1674 aa10.91□□□□□ -0.66
VPS50-218ENST00000485994 NPATQ14207 1427 aa10.91□□□□□ -0.66
VPS50-218ENST00000485994 C3P01024 1663 aa10.9□□□□□ -0.66
VPS50-218ENST00000485994 KIF3BO15066 747 aa10.9□□□□□ -0.66
VPS50-218ENST00000485994 FAM135AQ9P2D6 1515 aa10.89□□□□□ -0.67
VPS50-218ENST00000485994 PREX1Q8TCU6 1659 aa10.89□□□□□ -0.67
VPS50-218ENST00000485994 FXR2P51116 673 aaKnown RBP eCLIP10.89□□□□□ -0.67
VPS50-218ENST00000485994 TCOF1Q13428 1488 aaKnown RBP10.88□□□□□ -0.67
VPS50-218ENST00000485994 FOXD4L1Q9NU39 408 aa10.88□□□□□ -0.67
VPS50-218ENST00000485994 UHRF1BP1Q6BDS2 1440 aa10.87□□□□□ -0.67
VPS50-218ENST00000485994 FGD6Q6ZV73 1430 aa10.87□□□□□ -0.67
VPS50-218ENST00000485994 HSPA2P54652 639 aa10.87□□□□□ -0.67
VPS50-218ENST00000485994 ZBTB12Q9Y330 459 aaPredicted RBP10.87□□□□□ -0.67
VPS50-218ENST00000485994 ABCC5O15440 1437 aa10.86□□□□□ -0.67
VPS50-218ENST00000485994 PTPN23Q9H3S7 1636 aa10.86□□□□□ -0.67
VPS50-218ENST00000485994 PTPRKQ15262 1439 aa10.85□□□□□ -0.67
VPS50-218ENST00000485994 SLC4A1APQ9BWU0 796 aaKnown RBP10.85□□□□□ -0.67
VPS50-218ENST00000485994 SHANK2Q9UPX8 1470 aa10.85□□□□□ -0.67
VPS50-218ENST00000485994 WASHC2CQ9Y4E1 1318 aa10.84□□□□□ -0.67
VPS50-218ENST00000485994 CLTCQ00610 1675 aaKnown RBP10.84□□□□□ -0.67
VPS50-218ENST00000485994 DUOX2Q9NRD8 1548 aa10.84□□□□□ -0.67
VPS50-218ENST00000485994 DAPK1P53355 1430 aa10.83□□□□□ -0.68
VPS50-218ENST00000485994 DNMT1P26358 1616 aaKnown RBP10.82□□□□□ -0.68
VPS50-218ENST00000485994 EIF2AK4Q9P2K8 1649 aaKnown RBP10.82□□□□□ -0.68
VPS50-218ENST00000485994 NCOA1Q15788 1441 aa10.82□□□□□ -0.68
VPS50-218ENST00000485994 RNF17Q9BXT8 1623 aaKnown RBP10.81□□□□□ -0.68
VPS50-218ENST00000485994 ANKRD30AQ9BXX3 1397 aa10.81□□□□□ -0.68
VPS50-218ENST00000485994 STRCQ7RTU9 1775 aa10.81□□□□□ -0.68
VPS50-218ENST00000485994 KDM5DQ9BY66 1539 aa10.81□□□□□ -0.68
VPS50-218ENST00000485994 RRP7BPQ9NSQ0 103 aa10.81□□□□□ -0.68
VPS50-218ENST00000485994 PTPRTO14522 1441 aa10.81□□□□□ -0.68
VPS50-218ENST00000485994 ERBINQ96RT1 1412 aa10.81□□□□□ -0.68
VPS50-218ENST00000485994 PZPP20742 1482 aa10.81□□□□□ -0.68
VPS50-218ENST00000485994 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.8□□□□□ -0.68
VPS50-218ENST00000485994 KIF15Q9NS87 1388 aa10.8□□□□□ -0.68
VPS50-218ENST00000485994 PKD2Q13563 968 aa10.8□□□□□ -0.68
VPS50-218ENST00000485994 CROCC2H7BZ55 1655 aa10.79□□□□□ -0.68
VPS50-218ENST00000485994 ZBTB22O15209 634 aa10.79□□□□□ -0.68
VPS50-218ENST00000485994 FBXO31Q5XUX0 539 aaPredicted RBP10.79□□□□□ -0.68
VPS50-218ENST00000485994 ADGRL2O95490 1459 aa10.79□□□□□ -0.68
VPS50-218ENST00000485994 ARHGAP31Q2M1Z3 1444 aa10.78□□□□□ -0.68
VPS50-218ENST00000485994 ILDR1Q86SU0 546 aaPredicted RBP10.78□□□□□ -0.68
VPS50-218ENST00000485994 CHIC2Q9UKJ5 165 aa10.78□□□□□ -0.68
VPS50-218ENST00000485994 PLA2R1Q13018 1463 aa10.78□□□□□ -0.68
VPS50-218ENST00000485994 TNRQ92752 1358 aa10.77□□□□□ -0.68
VPS50-218ENST00000485994 A2ML1A8K2U0 1454 aa10.77□□□□□ -0.69
VPS50-218ENST00000485994 FAM50AQ14320 339 aaKnown RBP10.77□□□□□ -0.69
VPS50-218ENST00000485994 THEMISQ8N1K5 641 aaPredicted RBP10.77□□□□□ -0.69
VPS50-218ENST00000485994 FBXO41Q8TF61 875 aa10.77□□□□□ -0.69
VPS50-218ENST00000485994 ZNF142P52746 1687 aaPredicted RBP10.76□□□□□ -0.69
VPS50-218ENST00000485994 ZC3H13Q5T200 1668 aaKnown RBP10.76□□□□□ -0.69
VPS50-218ENST00000485994 ABCC3O15438 1527 aa10.76□□□□□ -0.69
VPS50-218ENST00000485994 MROH1Q8NDA8 1641 aa10.76□□□□□ -0.69
VPS50-218ENST00000485994 NLRP1Q9C000 1473 aa10.75□□□□□ -0.69
VPS50-218ENST00000485994 CERKQ8TCT0 537 aa10.75□□□□□ -0.69
VPS50-218ENST00000485994 ROCK1Q13464 1354 aa10.75□□□□□ -0.69
VPS50-218ENST00000485994 CFAP65Q6ZU64 1925 aaKnown RBP10.74□□□□□ -0.69
VPS50-218ENST00000485994 CEP170BQ9Y4F5 1589 aaPredicted RBP10.74□□□□□ -0.69
VPS50-218ENST00000485994 CAMSAP1Q5T5Y3 1602 aa10.74□□□□□ -0.69
VPS50-218ENST00000485994 MYO3AQ8NEV4 1616 aa10.74□□□□□ -0.69
VPS50-218ENST00000485994 KANK1Q14678 1352 aa10.74□□□□□ -0.69
VPS50-218ENST00000485994 PRDM15P57071 1507 aaPredicted RBP10.74□□□□□ -0.69
VPS50-218ENST00000485994 LMTK2Q8IWU2 1503 aa10.74□□□□□ -0.69
VPS50-218ENST00000485994 SPATA31D1Q6ZQQ2 1576 aa10.73□□□□□ -0.69
VPS50-218ENST00000485994 DEPDC5O75140 1603 aa10.73□□□□□ -0.69
VPS50-218ENST00000485994 VWDEQ8N2E2 1590 aa10.73□□□□□ -0.69
VPS50-218ENST00000485994 ANKLE2Q86XL3 938 aa10.72□□□□□ -0.69
VPS50-218ENST00000485994 NCKAP5LQ9HCH0 1330 aa10.72□□□□□ -0.69
VPS50-218ENST00000485994 ANKRD50Q9ULJ7 1429 aa10.72□□□□□ -0.69
VPS50-218ENST00000485994 ERVK-7P63135 1459 aa10.71□□□□□ -0.69
VPS50-218ENST00000485994 RRBP1Q9P2E9 1410 aaKnown RBP10.69□□□□□ -0.7
VPS50-218ENST00000485994 SLC52A1Q9NWF4 448 aa10.69□□□□□ -0.7
VPS50-218ENST00000485994 CEP152O94986 1710 aa10.69□□□□□ -0.7
VPS50-218ENST00000485994 UGGT1Q9NYU2 1555 aa10.69□□□□□ -0.7
VPS50-218ENST00000485994 MED14O60244 1454 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 171.7 ms