RNA–Protein interactions for RNA: ENST00000485883.5

CHRD-215, Transcript of chordin, human

TSL 4

Gene CHRD, Length 568 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHRD-215	ENST00000485883	TCOF1	Q13428	1488 aa	Known RBP	32.29	■■■□□ 2.76
CHRD-215	ENST00000485883	TSPY4	P0CV99	314 aa		32.27	■■■□□ 2.76
CHRD-215	ENST00000485883	TSPY10	P0CW01	314 aa		32.27	■■■□□ 2.76
CHRD-215	ENST00000485883	ARHGEF5	Q12774	1597 aa		32.27	■■■□□ 2.76
CHRD-215	ENST00000485883	A2ML1	A8K2U0	1454 aa		32.25	■■■□□ 2.75
CHRD-215	ENST00000485883	WASHC2C	Q9Y4E1	1318 aa		32.25	■■■□□ 2.75
CHRD-215	ENST00000485883	KDM5D	Q9BY66	1539 aa		32.24	■■■□□ 2.75
CHRD-215	ENST00000485883	TNR	Q92752	1358 aa		32.22	■■■□□ 2.75
CHRD-215	ENST00000485883	DNMT1	P26358	1616 aa	Known RBP	32.22	■■■□□ 2.75
CHRD-215	ENST00000485883	PZP	P20742	1482 aa		32.21	■■■□□ 2.75
CHRD-215	ENST00000485883	IQSEC2	Q5JU85	1478 aa		32.21	■■■□□ 2.75
CHRD-215	ENST00000485883	MAP3K1	Q13233	1512 aa		32.16	■■■□□ 2.74
CHRD-215	ENST00000485883	FAM135A	Q9P2D6	1515 aa		32.16	■■■□□ 2.74
CHRD-215	ENST00000485883	MYOM3	Q5VTT5	1437 aa		32.12	■■■□□ 2.73
CHRD-215	ENST00000485883	MAST1	Q9Y2H9	1570 aa		32.11	■■■□□ 2.73
CHRD-215	ENST00000485883	MIA2	Q96PC5	1412 aa		32.11	■■■□□ 2.73
CHRD-215	ENST00000485883	DISP3	Q9P2K9	1392 aa		32.1	■■■□□ 2.73
CHRD-215	ENST00000485883	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	32.07	■■■□□ 2.73
CHRD-215	ENST00000485883	UBAP1L	F5GYI3	381 aa		32.07	■■■□□ 2.72
CHRD-215	ENST00000485883	RNF17	Q9BXT8	1623 aa	Known RBP	32.06	■■■□□ 2.72
CHRD-215	ENST00000485883	NEURL4	Q96JN8	1562 aa		32.06	■■■□□ 2.72
CHRD-215	ENST00000485883	ABCC3	O15438	1527 aa		32.05	■■■□□ 2.72
CHRD-215	ENST00000485883	ILDR2	Q71H61	639 aa		32.03	■■■□□ 2.72
CHRD-215	ENST00000485883	NLRP1	Q9C000	1473 aa		32.03	■■■□□ 2.72
CHRD-215	ENST00000485883	ANKLE2	Q86XL3	938 aa		32.02	■■■□□ 2.72
CHRD-215	ENST00000485883	THEMIS	Q8N1K5	641 aa	Predicted RBP	32.02	■■■□□ 2.72
CHRD-215	ENST00000485883	POLR1A	O95602	1720 aa	Predicted RBP	32.01	■■■□□ 2.72
CHRD-215	ENST00000485883	UGGT1	Q9NYU2	1555 aa		32	■■■□□ 2.71
CHRD-215	ENST00000485883	MROH1	Q8NDA8	1641 aa		31.99	■■■□□ 2.71
CHRD-215	ENST00000485883	EIF2AK4	Q9P2K8	1649 aa	Known RBP	31.97	■■■□□ 2.71
CHRD-215	ENST00000485883	SPATA31D1	Q6ZQQ2	1576 aa		31.95	■■■□□ 2.71
CHRD-215	ENST00000485883	ABCC5	O15440	1437 aa		31.95	■■■□□ 2.71
CHRD-215	ENST00000485883	ERVK-7	P63135	1459 aa		31.94	■■■□□ 2.7
CHRD-215	ENST00000485883	SHANK2	Q9UPX8	1470 aa		31.94	■■■□□ 2.7
CHRD-215	ENST00000485883	ZC3H13	Q5T200	1668 aa	Known RBP	31.94	■■■□□ 2.7
CHRD-215	ENST00000485883	DUOX2	Q9NRD8	1548 aa		31.94	■■■□□ 2.7
CHRD-215	ENST00000485883	APLP2	Q06481	763 aa		31.93	■■■□□ 2.7
CHRD-215	ENST00000485883	RRP7BP	Q9NSQ0	103 aa		31.93	■■■□□ 2.7
CHRD-215	ENST00000485883	KIF15	Q9NS87	1388 aa		31.93	■■■□□ 2.7
CHRD-215	ENST00000485883	NPHP4	O75161	1426 aa	Predicted RBP	31.92	■■■□□ 2.7
CHRD-215	ENST00000485883	CEP152	O94986	1710 aa		31.9	■■■□□ 2.7
CHRD-215	ENST00000485883	MED14	O60244	1454 aa		31.9	■■■□□ 2.7
CHRD-215	ENST00000485883	PTPN23	Q9H3S7	1636 aa		31.89	■■■□□ 2.7
CHRD-215	ENST00000485883	CPS1	P31327	1500 aa		31.88	■■■□□ 2.69
CHRD-215	ENST00000485883	VWDE	Q8N2E2	1590 aa		31.88	■■■□□ 2.69
CHRD-215	ENST00000485883	DEPDC5	O75140	1603 aa		31.87	■■■□□ 2.69
CHRD-215	ENST00000485883	DAPK1	P53355	1430 aa		31.85	■■■□□ 2.69
CHRD-215	ENST00000485883	CFAP65	Q6ZU64	1925 aa	Known RBP	31.85	■■■□□ 2.69
CHRD-215	ENST00000485883	CROCC2	H7BZ55	1655 aa		31.84	■■■□□ 2.69
CHRD-215	ENST00000485883	FGD6	Q6ZV73	1430 aa		31.83	■■■□□ 2.69
CHRD-215	ENST00000485883	ERBIN	Q96RT1	1412 aa		31.83	■■■□□ 2.69
CHRD-215	ENST00000485883	PIP4K2B	P78356	416 aa		31.83	■■■□□ 2.69
CHRD-215	ENST00000485883	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	31.83	■■■□□ 2.69	3e-7	■■□□□ 11.9
CHRD-215	ENST00000485883	SCAF1	Q9H7N4	1312 aa	Known RBP	31.82	■■■□□ 2.68
CHRD-215	ENST00000485883	PRDM15	P57071	1507 aa	Predicted RBP	31.81	■■■□□ 2.68
CHRD-215	ENST00000485883	CHIC2	Q9UKJ5	165 aa		31.81	■■■□□ 2.68
CHRD-215	ENST00000485883	IQGAP1	P46940	1657 aa		31.8	■■■□□ 2.68
CHRD-215	ENST00000485883	TOM1	O60784	492 aa		31.79	■■■□□ 2.68
CHRD-215	ENST00000485883	ARHGAP31	Q2M1Z3	1444 aa		31.78	■■■□□ 2.68
CHRD-215	ENST00000485883	HSPA1L	P34931	641 aa		31.77	■■■□□ 2.68
CHRD-215	ENST00000485883	UBR1	Q8IWV7	1749 aa		31.76	■■■□□ 2.67
CHRD-215	ENST00000485883	SOCS7	O14512	581 aa		31.74	■■■□□ 2.67
CHRD-215	ENST00000485883	LTK	P29376	864 aa		31.74	■■■□□ 2.67
CHRD-215	ENST00000485883	STRCP1	A6NGW2	1772 aa		31.71	■■■□□ 2.67
CHRD-215	ENST00000485883	ANKRD30A	Q9BXX3	1397 aa		31.71	■■■□□ 2.67
CHRD-215	ENST00000485883	SCAF11	Q99590	1463 aa	Known RBP	31.71	■■■□□ 2.67
CHRD-215	ENST00000485883	TXNDC2	Q86VQ3	553 aa		31.7	■■■□□ 2.67
CHRD-215	ENST00000485883	ALK	Q9UM73	1620 aa		31.69	■■■□□ 2.66
CHRD-215	ENST00000485883	KANK1	Q14678	1352 aa		31.68	■■■□□ 2.66
CHRD-215	ENST00000485883	ARHGAP23	Q9P227	1491 aa		31.68	■■■□□ 2.66
CHRD-215	ENST00000485883	LRRC7	Q96NW7	1537 aa		31.67	■■■□□ 2.66
CHRD-215	ENST00000485883	SLIT1	O75093	1534 aa		31.66	■■■□□ 2.66
CHRD-215	ENST00000485883	PIK3C2B	O00750	1634 aa		31.63	■■■□□ 2.65
CHRD-215	ENST00000485883	FAM50A	Q14320	339 aa	Known RBP	31.62	■■■□□ 2.65
CHRD-215	ENST00000485883	LMTK2	Q8IWU2	1503 aa		31.62	■■■□□ 2.65
CHRD-215	ENST00000485883	IDI1	Q13907	227 aa		31.61	■■■□□ 2.65
CHRD-215	ENST00000485883	STAG3	Q9UJ98	1225 aa		31.6	■■■□□ 2.65
CHRD-215	ENST00000485883	EID1	Q9Y6B2	187 aa		31.6	■■■□□ 2.65
CHRD-215	ENST00000485883	TMEM2	Q9UHN6	1383 aa		31.59	■■■□□ 2.65
CHRD-215	ENST00000485883	ADGRL2	O95490	1459 aa		31.58	■■■□□ 2.65
CHRD-215	ENST00000485883	SENP3	Q9H4L4	574 aa	Predicted RBP	31.56	■■■□□ 2.64
CHRD-215	ENST00000485883	SYNM	O15061	1565 aa		31.56	■■■□□ 2.64
CHRD-215	ENST00000485883	NOS1	P29475	1434 aa		31.53	■■■□□ 2.64
CHRD-215	ENST00000485883	EFCAB6	Q5THR3	1501 aa		31.52	■■■□□ 2.64
CHRD-215	ENST00000485883	MED1	Q15648	1581 aa	Predicted RBP	31.51	■■■□□ 2.64
CHRD-215	ENST00000485883	ANKRD50	Q9ULJ7	1429 aa		31.5	■■■□□ 2.63
CHRD-215	ENST00000485883	KDM5A	P29375	1690 aa	Known RBP	31.45	■■■□□ 2.63
CHRD-215	ENST00000485883	SLC26A8	Q96RN1	970 aa		31.45	■■■□□ 2.63
CHRD-215	ENST00000485883	SLC52A1	Q9NWF4	448 aa		31.43	■■■□□ 2.62
CHRD-215	ENST00000485883	XIRP1	Q702N8	1843 aa	Known RBP	31.42	■■■□□ 2.62
CHRD-215	ENST00000485883	ADGRB3	O60242	1522 aa		31.42	■■■□□ 2.62
CHRD-215	ENST00000485883	TET3	O43151	1660 aa		31.41	■■■□□ 2.62
CHRD-215	ENST00000485883	KCNA6	P17658	529 aa		31.39	■■■□□ 2.62
CHRD-215	ENST00000485883	RBM33	Q96EV2	1170 aa	Known RBP	31.38	■■■□□ 2.61
CHRD-215	ENST00000485883	TMEM94	Q12767	1356 aa		31.38	■■■□□ 2.61
CHRD-215	ENST00000485883	RPRD2	Q5VT52	1461 aa	Known RBP	31.38	■■■□□ 2.61
CHRD-215	ENST00000485883	BCAN	Q96GW7	911 aa		31.33	■■■□□ 2.61
CHRD-215	ENST00000485883	PROSER2	Q86WR7	435 aa	Predicted RBP	31.32	■■■□□ 2.6
CHRD-215	ENST00000485883	PHF23	Q9BUL5	403 aa	Predicted RBP	31.32	■■■□□ 2.6
CHRD-215	ENST00000485883	ZFYVE9	O95405	1425 aa		31.3	■■■□□ 2.6

Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms