RNA–Protein interactions for RNA: ENST00000485867.5

SMC4-217, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 629 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-217ENST00000485867 SLC34A2O95436 690 aa12.41□□□□□ -0.42
SMC4-217ENST00000485867 MMRN1Q13201 1228 aa12.41□□□□□ -0.42
SMC4-217ENST00000485867 SHROOM2Q13796 1616 aa12.4□□□□□ -0.42
SMC4-217ENST00000485867 GRIN2AQ12879 1464 aa12.39□□□□□ -0.43
SMC4-217ENST00000485867 ZNF687Q8N1G0 1237 aa12.37□□□□□ -0.43
SMC4-217ENST00000485867 RYDENQ9NUL5 291 aaKnown RBP12.37□□□□□ -0.43
SMC4-217ENST00000485867 NUP160Q12769 1436 aa12.37□□□□□ -0.43
SMC4-217ENST00000485867 KDM4FA0A1W2PPD8 638 aa12.36□□□□□ -0.43
SMC4-217ENST00000485867 ABCA10Q8WWZ4 1543 aa12.36□□□□□ -0.43
SMC4-217ENST00000485867 ADAMTS12P58397 1594 aa12.35□□□□□ -0.43
SMC4-217ENST00000485867 ZNF316A6NFI3 1004 aaPredicted RBP12.35□□□□□ -0.43
SMC4-217ENST00000485867 GPHNQ9NQX3 736 aaPredicted RBP12.35□□□□□ -0.43
SMC4-217ENST00000485867 PCDHGA4Q9Y5G9 962 aa12.35□□□□□ -0.43
SMC4-217ENST00000485867 FOXK1P85037 733 aa12.34□□□□□ -0.43
SMC4-217ENST00000485867 NUDT7P0C024 238 aa12.33□□□□□ -0.44
SMC4-217ENST00000485867 ABCC10Q5T3U5 1492 aa12.33□□□□□ -0.44
SMC4-217ENST00000485867 KDM6BO15054 1643 aa12.33□□□□□ -0.44
SMC4-217ENST00000485867 DIP2BQ9P265 1576 aa12.32□□□□□ -0.44
SMC4-217ENST00000485867 DSG2Q14126 1118 aa12.3□□□□□ -0.44
SMC4-217ENST00000485867 PLPP6Q8IY26 295 aa12.3□□□□□ -0.44
SMC4-217ENST00000485867 MAPKBP1O60336 1514 aa12.29□□□□□ -0.44
SMC4-217ENST00000485867 GTPBP6O43824 516 aaPredicted RBP12.29□□□□□ -0.44
SMC4-217ENST00000485867 TSPOAP1O95153 1857 aa12.28□□□□□ -0.44
SMC4-217ENST00000485867 FAM69CQ0P6D2 419 aa12.28□□□□□ -0.44
SMC4-217ENST00000485867 PTCD2Q8WV60 388 aaKnown RBP12.28□□□□□ -0.44
SMC4-217ENST00000485867 LHX6Q9UPM6 363 aa12.27□□□□□ -0.45
SMC4-217ENST00000485867 CRISPLD2Q9H0B8 497 aa12.26□□□□□ -0.45
SMC4-217ENST00000485867 PRG4Q92954 1404 aaPredicted RBP12.26□□□□□ -0.45
SMC4-217ENST00000485867 FHAD1B1AJZ9 1412 aa12.25□□□□□ -0.45
SMC4-217ENST00000485867 ADCY10Q96PN6 1610 aa12.24□□□□□ -0.45
SMC4-217ENST00000485867 NCKAP5LQ9HCH0 1330 aa12.21□□□□□ -0.45
SMC4-217ENST00000485867 ERICH3Q5RHP9 1530 aa12.2□□□□□ -0.46
SMC4-217ENST00000485867 RUSC2Q8N2Y8 1516 aa12.2□□□□□ -0.46
SMC4-217ENST00000485867 HECW2Q9P2P5 1572 aa12.19□□□□□ -0.46
SMC4-217ENST00000485867 WRNQ14191 1432 aaPredicted RBP eCLIP12.19□□□□□ -0.46
SMC4-217ENST00000485867 POTEEQ6S8J3 1075 aa12.18□□□□□ -0.46
SMC4-217ENST00000485867 ADGRL1O94910 1474 aa12.18□□□□□ -0.46
SMC4-217ENST00000485867 PPP1R15BQ5SWA1 713 aa12.17□□□□□ -0.46
SMC4-217ENST00000485867 JPH4Q96JJ6 628 aa12.17□□□□□ -0.46
SMC4-217ENST00000485867 PBX2P40425 430 aa12.16□□□□□ -0.46
SMC4-217ENST00000485867 LSM11P83369 360 aaKnown RBP eCLIP12.16□□□□□ -0.46
SMC4-217ENST00000485867 OXER1Q8TDS5 423 aa12.16□□□□□ -0.46
SMC4-217ENST00000485867 BIVM-ERCC5R4GMW8 1640 aa12.15□□□□□ -0.46
SMC4-217ENST00000485867 PSDA5PKW4 1024 aaPredicted RBP12.15□□□□□ -0.46
SMC4-217ENST00000485867 TBC1D12O60347 775 aa12.15□□□□□ -0.46
SMC4-217ENST00000485867 PDE4AP27815 886 aa12.15□□□□□ -0.46
SMC4-217ENST00000485867 PPRC1Q5VV67 1664 aaKnown RBP12.14□□□□□ -0.47
SMC4-217ENST00000485867 ANKRD13DQ6ZTN6 518 aa12.14□□□□□ -0.47
SMC4-217ENST00000485867 TOP2BQ02880 1626 aa12.13□□□□□ -0.47
SMC4-217ENST00000485867 AXIN2Q9Y2T1 843 aa12.12□□□□□ -0.47
SMC4-217ENST00000485867 RNF166Q96A37 237 aaPredicted RBP12.11□□□□□ -0.47
SMC4-217ENST00000485867 MYT1LQ9UL68 1186 aa12.11□□□□□ -0.47
SMC4-217ENST00000485867 PTGER2P43116 358 aa12.1□□□□□ -0.47
SMC4-217ENST00000485867 UPF1Q92900 1129 aaKnown RBP eCLIP12.1□□□□□ -0.47
SMC4-217ENST00000485867 MFSD10Q14728 455 aa12.09□□□□□ -0.47
SMC4-217ENST00000485867 LARP6Q9BRS8 491 aaKnown RBP12.09□□□□□ -0.47
SMC4-217ENST00000485867 AMER1Q5JTC6 1135 aaPredicted RBP12.08□□□□□ -0.48
SMC4-217ENST00000485867 ARHGAP33O14559 1287 aa12.07□□□□□ -0.48
SMC4-217ENST00000485867 GLI2P10070 1586 aa12.07□□□□□ -0.48
SMC4-217ENST00000485867 CADPS2Q86UW7 1296 aa12.07□□□□□ -0.48
SMC4-217ENST00000485867 DDX27Q96GQ7 796 aaKnown RBP12.07□□□□□ -0.48
SMC4-217ENST00000485867 PPP4R3BQ5MIZ7 849 aa12.05□□□□□ -0.48
SMC4-217ENST00000485867 COL17A1Q9UMD9 1497 aaPredicted RBP12.04□□□□□ -0.48
SMC4-217ENST00000485867 BBXQ8WY36 941 aaPredicted RBP12.04□□□□□ -0.48
SMC4-217ENST00000485867 RTN4Q9NQC3 1192 aaKnown RBP12.03□□□□□ -0.48
SMC4-217ENST00000485867 ABCC2Q92887 1545 aa12.02□□□□□ -0.48
SMC4-217ENST00000485867 KIAA0586Q9BVV6 1533 aa12.02□□□□□ -0.48
SMC4-217ENST00000485867 FBXO41Q8TF61 875 aa12.02□□□□□ -0.49
SMC4-217ENST00000485867 CUL7Q14999 1698 aa12.02□□□□□ -0.49
SMC4-217ENST00000485867 ASXL2Q76L83 1435 aa12.02□□□□□ -0.49
SMC4-217ENST00000485867 PLB1Q6P1J6 1458 aa12.02□□□□□ -0.49
SMC4-217ENST00000485867 MAP3K4Q9Y6R4 1608 aa12□□□□□ -0.49
SMC4-217ENST00000485867 PSEN2P49810 448 aa12□□□□□ -0.49
SMC4-217ENST00000485867 DMRTA1Q5VZB9 504 aa12□□□□□ -0.49
SMC4-217ENST00000485867 ADGRD1Q6QNK2 874 aa12□□□□□ -0.49
SMC4-217ENST00000485867 ANO8Q9HCE9 1232 aaPredicted RBP12□□□□□ -0.49
SMC4-217ENST00000485867 PTPRGP23470 1445 aa11.99□□□□□ -0.49
SMC4-217ENST00000485867 EMILIN3Q9NT22 766 aa11.98□□□□□ -0.49
SMC4-217ENST00000485867 TK2O00142 265 aa11.97□□□□□ -0.49
SMC4-217ENST00000485867 EVI5O60447 810 aa11.97□□□□□ -0.49
SMC4-217ENST00000485867 ZNF454Q8N9F8 522 aa11.97□□□□□ -0.49
SMC4-217ENST00000485867 TEX14Q8IWB6 1497 aa11.96□□□□□ -0.49
SMC4-217ENST00000485867 FOSBP53539 338 aa11.96□□□□□ -0.49
SMC4-217ENST00000485867 EPRSP07814 1512 aaKnown RBP11.96□□□□□ -0.5
SMC4-217ENST00000485867 KCNK17Q96T54 332 aa11.94□□□□□ -0.5
SMC4-217ENST00000485867 UHRF1BP1LA0JNW5 1464 aa11.94□□□□□ -0.5
SMC4-217ENST00000485867 TNIKQ9UKE5 1360 aa11.93□□□□□ -0.5
SMC4-217ENST00000485867 HRO43593 1189 aa11.93□□□□□ -0.5
SMC4-217ENST00000485867 MAP3K9P80192 1104 aa11.93□□□□□ -0.5
SMC4-217ENST00000485867 BCL2L12Q9HB09 334 aa11.93□□□□□ -0.5
SMC4-217ENST00000485867 TTBK1Q5TCY1 1321 aaPredicted RBP11.91□□□□□ -0.5
SMC4-217ENST00000485867 CAMK2BQ13554 666 aa11.91□□□□□ -0.5
SMC4-217ENST00000485867 ZCCHC11Q5TAX3 1644 aaKnown RBP11.9□□□□□ -0.5
SMC4-217ENST00000485867 CARMIL2Q6F5E8 1435 aa11.9□□□□□ -0.5
SMC4-217ENST00000485867 SPRYD3Q8NCJ5 442 aa11.9□□□□□ -0.5
SMC4-217ENST00000485867 KCNH8Q96L42 1107 aa11.9□□□□□ -0.5
SMC4-217ENST00000485867 KDM5BQ9UGL1 1544 aa11.9□□□□□ -0.5
SMC4-217ENST00000485867 KIF21BO75037 1637 aa11.89□□□□□ -0.51
SMC4-217ENST00000485867 UACAQ9BZF9 1416 aa11.89□□□□□ -0.51
SMC4-217ENST00000485867 IGF1RP08069 1367 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms