RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 DNMT1P26358 1616 aaKnown RBP20.84■□□□□ 0.93
HDAC6-227ENST00000485102 CAMSAP2Q08AD1 1489 aa20.83■□□□□ 0.93
HDAC6-227ENST00000485102 PZPP20742 1482 aa20.82■□□□□ 0.92
HDAC6-227ENST00000485102 TNRQ92752 1358 aa20.82■□□□□ 0.92
HDAC6-227ENST00000485102 ARHGEF5Q12774 1597 aa20.81■□□□□ 0.92
HDAC6-227ENST00000485102 SOCS7O14512 581 aa20.81■□□□□ 0.92
HDAC6-227ENST00000485102 KDM5DQ9BY66 1539 aa20.81■□□□□ 0.92
HDAC6-227ENST00000485102 FBXO31Q5XUX0 539 aaPredicted RBP20.8■□□□□ 0.92
HDAC6-227ENST00000485102 WASHC2CQ9Y4E1 1318 aa20.79■□□□□ 0.92
HDAC6-227ENST00000485102 UBAP1LF5GYI3 381 aa20.79■□□□□ 0.92
HDAC6-227ENST00000485102 TSPY4P0CV99 314 aa20.79■□□□□ 0.92
HDAC6-227ENST00000485102 TSPY10P0CW01 314 aa20.79■□□□□ 0.92
HDAC6-227ENST00000485102 SPATA31D1Q6ZQQ2 1576 aa20.77■□□□□ 0.92
HDAC6-227ENST00000485102 MIA2Q96PC5 1412 aa20.77■□□□□ 0.91
HDAC6-227ENST00000485102 THEMISQ8N1K5 641 aaPredicted RBP20.76■□□□□ 0.91
HDAC6-227ENST00000485102 NLRP1Q9C000 1473 aa20.75■□□□□ 0.91
HDAC6-227ENST00000485102 ANKLE2Q86XL3 938 aa20.74■□□□□ 0.91
HDAC6-227ENST00000485102 LRRC9Q6ZRR7 1453 aa20.74■□□□□ 0.91
HDAC6-227ENST00000485102 POLR1AO95602 1720 aaPredicted RBP20.73■□□□□ 0.91
HDAC6-227ENST00000485102 NEURL4Q96JN8 1562 aa20.73■□□□□ 0.91
HDAC6-227ENST00000485102 CPS1P31327 1500 aa20.73■□□□□ 0.91
HDAC6-227ENST00000485102 VPS8Q8N3P4 1428 aa20.72■□□□□ 0.91
HDAC6-227ENST00000485102 MED14O60244 1454 aa20.71■□□□□ 0.91
HDAC6-227ENST00000485102 SHANK2Q9UPX8 1470 aa20.71■□□□□ 0.91
HDAC6-227ENST00000485102 MAP3K1Q13233 1512 aa20.71■□□□□ 0.91
HDAC6-227ENST00000485102 MAST1Q9Y2H9 1570 aa20.71■□□□□ 0.91
HDAC6-227ENST00000485102 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.7■□□□□ 0.9
HDAC6-227ENST00000485102 RNF17Q9BXT8 1623 aaKnown RBP20.69■□□□□ 0.9
HDAC6-227ENST00000485102 UGGT1Q9NYU2 1555 aa20.68■□□□□ 0.9
HDAC6-227ENST00000485102 DEPDC5O75140 1603 aa20.68■□□□□ 0.9
HDAC6-227ENST00000485102 TOM1O60784 492 aa20.67■□□□□ 0.9
HDAC6-227ENST00000485102 ZC3H13Q5T200 1668 aaKnown RBP20.65■□□□□ 0.9
HDAC6-227ENST00000485102 EIF2AK4Q9P2K8 1649 aaKnown RBP20.65■□□□□ 0.9
HDAC6-227ENST00000485102 ABCC3O15438 1527 aa20.65■□□□□ 0.9
HDAC6-227ENST00000485102 VWDEQ8N2E2 1590 aa20.64■□□□□ 0.9
HDAC6-227ENST00000485102 NPHP4O75161 1426 aaPredicted RBP20.64■□□□□ 0.89
HDAC6-227ENST00000485102 MYOM3Q5VTT5 1437 aa20.63■□□□□ 0.89
HDAC6-227ENST00000485102 KANK4Q5T7N3 995 aaPredicted RBP20.63■□□□□ 0.89
HDAC6-227ENST00000485102 MROH1Q8NDA8 1641 aa20.6■□□□□ 0.89
HDAC6-227ENST00000485102 LOC105371045A0A1W2PR82 267 aa20.6■□□□□ 0.89
HDAC6-227ENST00000485102 ERVK-7P63135 1459 aa20.6■□□□□ 0.89
HDAC6-227ENST00000485102 HSPA1LP34931 641 aa20.59■□□□□ 0.89
HDAC6-227ENST00000485102 DUOX2Q9NRD8 1548 aa20.58■□□□□ 0.89
HDAC6-227ENST00000485102 ARHGAP31Q2M1Z3 1444 aa20.57■□□□□ 0.88
HDAC6-227ENST00000485102 IQGAP1P46940 1657 aa20.57■□□□□ 0.88
HDAC6-227ENST00000485102 PIP4K2BP78356 416 aa20.55■□□□□ 0.88
HDAC6-227ENST00000485102 ALKQ9UM73 1620 aa20.53■□□□□ 0.88
HDAC6-227ENST00000485102 CFAP65Q6ZU64 1925 aaKnown RBP20.53■□□□□ 0.88
HDAC6-227ENST00000485102 ERBINQ96RT1 1412 aa20.53■□□□□ 0.88
HDAC6-227ENST00000485102 SCAF1Q9H7N4 1312 aaKnown RBP20.53■□□□□ 0.88
HDAC6-227ENST00000485102 UBR1Q8IWV7 1749 aa20.52■□□□□ 0.88
HDAC6-227ENST00000485102 ABCC5O15440 1437 aa20.52■□□□□ 0.87
HDAC6-227ENST00000485102 ARHGAP23Q9P227 1491 aa20.51■□□□□ 0.87
HDAC6-227ENST00000485102 KIF15Q9NS87 1388 aa20.51■□□□□ 0.87
HDAC6-227ENST00000485102 CEP152O94986 1710 aa20.51■□□□□ 0.87
HDAC6-227ENST00000485102 PRDM15P57071 1507 aaPredicted RBP20.51■□□□□ 0.87
HDAC6-227ENST00000485102 LRRC7Q96NW7 1537 aa20.51■□□□□ 0.87
HDAC6-227ENST00000485102 SLIT1O75093 1534 aa20.5■□□□□ 0.87
HDAC6-227ENST00000485102 SCAF11Q99590 1463 aaKnown RBP20.5■□□□□ 0.87
HDAC6-227ENST00000485102 STRCP1A6NGW2 1772 aa20.49■□□□□ 0.87
HDAC6-227ENST00000485102 SYNMO15061 1565 aa20.48■□□□□ 0.87
HDAC6-227ENST00000485102 MED1Q15648 1581 aaPredicted RBP20.48■□□□□ 0.87
HDAC6-227ENST00000485102 LTKP29376 864 aa20.47■□□□□ 0.87
HDAC6-227ENST00000485102 TXNDC2Q86VQ3 553 aa20.46■□□□□ 0.87
HDAC6-227ENST00000485102 RRP7BPQ9NSQ0 103 aa20.46■□□□□ 0.87
HDAC6-227ENST00000485102 CROCC2H7BZ55 1655 aa20.45■□□□□ 0.86
HDAC6-227ENST00000485102 PTPN23Q9H3S7 1636 aa20.45■□□□□ 0.86
HDAC6-227ENST00000485102 DAPK1P53355 1430 aa20.44■□□□□ 0.86
HDAC6-227ENST00000485102 APLP2Q06481 763 aa20.43■□□□□ 0.86
HDAC6-227ENST00000485102 EID1Q9Y6B2 187 aa20.43■□□□□ 0.86
HDAC6-227ENST00000485102 KANK1Q14678 1352 aa20.43■□□□□ 0.86
HDAC6-227ENST00000485102 LMTK2Q8IWU2 1503 aa20.43■□□□□ 0.86
HDAC6-227ENST00000485102 TMEM2Q9UHN6 1383 aa20.42■□□□□ 0.86
HDAC6-227ENST00000485102 FGD6Q6ZV73 1430 aa20.42■□□□□ 0.86
HDAC6-227ENST00000485102 KDM5AP29375 1690 aaKnown RBP20.41■□□□□ 0.86
HDAC6-227ENST00000485102 ANKRD30AQ9BXX3 1397 aa20.4■□□□□ 0.86
HDAC6-227ENST00000485102 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.39■□□□□ 0.859e-7■■■■□ 20.8
HDAC6-227ENST00000485102 IDI1Q13907 227 aa20.38■□□□□ 0.85
HDAC6-227ENST00000485102 PIK3C2BO00750 1634 aa20.38■□□□□ 0.85
HDAC6-227ENST00000485102 NOS1P29475 1434 aa20.36■□□□□ 0.85
HDAC6-227ENST00000485102 EFCAB6Q5THR3 1501 aa20.34■□□□□ 0.85
HDAC6-227ENST00000485102 STAG3Q9UJ98 1225 aa20.34■□□□□ 0.85
HDAC6-227ENST00000485102 XIRP1Q702N8 1843 aaKnown RBP20.34■□□□□ 0.85
HDAC6-227ENST00000485102 ADGRL2O95490 1459 aa20.33■□□□□ 0.85
HDAC6-227ENST00000485102 KCNA6P17658 529 aa20.33■□□□□ 0.85
HDAC6-227ENST00000485102 SLC52A1Q9NWF4 448 aa20.33■□□□□ 0.85
HDAC6-227ENST00000485102 FAM135BQ49AJ0 1406 aa20.33■□□□□ 0.84
HDAC6-227ENST00000485102 TET3O43151 1660 aa20.32■□□□□ 0.84
HDAC6-227ENST00000485102 PHF23Q9BUL5 403 aaPredicted RBP20.32■□□□□ 0.84
HDAC6-227ENST00000485102 CHIC2Q9UKJ5 165 aa20.32■□□□□ 0.84
HDAC6-227ENST00000485102 RPRD2Q5VT52 1461 aaKnown RBP20.29■□□□□ 0.84
HDAC6-227ENST00000485102 TMEM94Q12767 1356 aa20.28■□□□□ 0.84
HDAC6-227ENST00000485102 ADGRB3O60242 1522 aa20.26■□□□□ 0.83
HDAC6-227ENST00000485102 SLC26A8Q96RN1 970 aa20.25■□□□□ 0.83
HDAC6-227ENST00000485102 ANKRD50Q9ULJ7 1429 aa20.25■□□□□ 0.83
HDAC6-227ENST00000485102 NKTRP30414 1462 aaKnown RBP20.24■□□□□ 0.83
HDAC6-227ENST00000485102 PROSER2Q86WR7 435 aaPredicted RBP20.23■□□□□ 0.83
HDAC6-227ENST00000485102 NWD1Q149M9 1564 aa20.22■□□□□ 0.83
HDAC6-227ENST00000485102 RGS17Q9UGC6 210 aaPredicted RBP20.22■□□□□ 0.83
HDAC6-227ENST00000485102 HDGFP51858 240 aaKnown RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms