RNA–Protein interactions for RNA: ENST00000484733.6

SCFD1-206, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 2,308 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-206ENST00000484733 KIF3BO15066 747 aa18.14■□□□□ 0.49
SCFD1-206ENST00000484733 KANK4Q5T7N3 995 aaPredicted RBP18.14■□□□□ 0.49
SCFD1-206ENST00000484733 KDM5DQ9BY66 1539 aa18.13■□□□□ 0.49
SCFD1-206ENST00000484733 LTBP4Q8N2S1 1624 aa18.13■□□□□ 0.49
SCFD1-206ENST00000484733 PKD2Q13563 968 aa18.12■□□□□ 0.49
SCFD1-206ENST00000484733 MYOM3Q5VTT5 1437 aa18.12■□□□□ 0.49
SCFD1-206ENST00000484733 A2ML1A8K2U0 1454 aa18.11■□□□□ 0.49
SCFD1-206ENST00000484733 IQSEC2Q5JU85 1478 aa18.11■□□□□ 0.49
SCFD1-206ENST00000484733 PZPP20742 1482 aa18.1■□□□□ 0.49
SCFD1-206ENST00000484733 TCOF1Q13428 1488 aaKnown RBP18.1■□□□□ 0.49
SCFD1-206ENST00000484733 NCKAP5LQ9HCH0 1330 aa18.09■□□□□ 0.49
SCFD1-206ENST00000484733 RNF17Q9BXT8 1623 aaKnown RBP18.08■□□□□ 0.49
SCFD1-206ENST00000484733 DNMT1P26358 1616 aaKnown RBP18.08■□□□□ 0.48
SCFD1-206ENST00000484733 WASHC2CQ9Y4E1 1318 aa18.07■□□□□ 0.48
SCFD1-206ENST00000484733 TNRQ92752 1358 aa18.07■□□□□ 0.48
SCFD1-206ENST00000484733 EIF2AK4Q9P2K8 1649 aaKnown RBP18.07■□□□□ 0.48
SCFD1-206ENST00000484733 FBXO31Q5XUX0 539 aaPredicted RBP18.04■□□□□ 0.48
SCFD1-206ENST00000484733 ZC3H13Q5T200 1668 aaKnown RBP18.04■□□□□ 0.48
SCFD1-206ENST00000484733 NLRP1Q9C000 1473 aa18.02■□□□□ 0.48
SCFD1-206ENST00000484733 DUOX2Q9NRD8 1548 aa18.02■□□□□ 0.48
SCFD1-206ENST00000484733 APLP2Q06481 763 aa18.01■□□□□ 0.47
SCFD1-206ENST00000484733 ABCC3O15438 1527 aa18.01■□□□□ 0.47
SCFD1-206ENST00000484733 SHANK2Q9UPX8 1470 aa18.01■□□□□ 0.47
SCFD1-206ENST00000484733 MROH1Q8NDA8 1641 aa18■□□□□ 0.47
SCFD1-206ENST00000484733 PTPN23Q9H3S7 1636 aa18■□□□□ 0.47
SCFD1-206ENST00000484733 CROCC2H7BZ55 1655 aa18■□□□□ 0.47
SCFD1-206ENST00000484733 POLR1AO95602 1720 aaPredicted RBP17.99■□□□□ 0.47
SCFD1-206ENST00000484733 ABCC5O15440 1437 aa17.99■□□□□ 0.47
SCFD1-206ENST00000484733 SPATA31D1Q6ZQQ2 1576 aa17.98■□□□□ 0.47
SCFD1-206ENST00000484733 ZNF335Q9H4Z2 1342 aaPredicted RBP17.98■□□□□ 0.47
SCFD1-206ENST00000484733 THEMISQ8N1K5 641 aaPredicted RBP17.97■□□□□ 0.47
SCFD1-206ENST00000484733 NEURL4Q96JN8 1562 aa17.97■□□□□ 0.47
SCFD1-206ENST00000484733 ERBINQ96RT1 1412 aa17.96■□□□□ 0.47
SCFD1-206ENST00000484733 FGD6Q6ZV73 1430 aa17.95■□□□□ 0.46
SCFD1-206ENST00000484733 UGGT1Q9NYU2 1555 aa17.95■□□□□ 0.46
SCFD1-206ENST00000484733 KIF15Q9NS87 1388 aa17.95■□□□□ 0.46
SCFD1-206ENST00000484733 DAPK1P53355 1430 aa17.94■□□□□ 0.46
SCFD1-206ENST00000484733 ERVK-7P63135 1459 aa17.94■□□□□ 0.46
SCFD1-206ENST00000484733 DEPDC5O75140 1603 aa17.94■□□□□ 0.46
SCFD1-206ENST00000484733 ANKLE2Q86XL3 938 aa17.94■□□□□ 0.46
SCFD1-206ENST00000484733 MED14O60244 1454 aa17.93■□□□□ 0.46
SCFD1-206ENST00000484733 CEP152O94986 1710 aa17.93■□□□□ 0.46
SCFD1-206ENST00000484733 PRDM15P57071 1507 aaPredicted RBP17.93■□□□□ 0.46
SCFD1-206ENST00000484733 ARHGAP31Q2M1Z3 1444 aa17.92■□□□□ 0.46
SCFD1-206ENST00000484733 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.92■□□□□ 0.46
SCFD1-206ENST00000484733 CPS1P31327 1500 aa17.9■□□□□ 0.46
SCFD1-206ENST00000484733 RRP7BPQ9NSQ0 103 aa17.89■□□□□ 0.46
SCFD1-206ENST00000484733 NPHP4O75161 1426 aaPredicted RBP17.88■□□□□ 0.45
SCFD1-206ENST00000484733 ANKRD30AQ9BXX3 1397 aa17.88■□□□□ 0.45
SCFD1-206ENST00000484733 VWDEQ8N2E2 1590 aa17.87■□□□□ 0.45
SCFD1-206ENST00000484733 UBR1Q8IWV7 1749 aa17.85■□□□□ 0.45
SCFD1-206ENST00000484733 LMTK2Q8IWU2 1503 aa17.85■□□□□ 0.45
SCFD1-206ENST00000484733 ADGRL2O95490 1459 aa17.85■□□□□ 0.45
SCFD1-206ENST00000484733 UBAP1LF5GYI3 381 aa17.85■□□□□ 0.45
SCFD1-206ENST00000484733 IQGAP1P46940 1657 aa17.85■□□□□ 0.45
SCFD1-206ENST00000484733 KANK1Q14678 1352 aa17.84■□□□□ 0.45
SCFD1-206ENST00000484733 CFAP65Q6ZU64 1925 aaKnown RBP17.83■□□□□ 0.45
SCFD1-206ENST00000484733 ARHGAP23Q9P227 1491 aa17.82■□□□□ 0.44
SCFD1-206ENST00000484733 SLIT1O75093 1534 aa17.82■□□□□ 0.44
SCFD1-206ENST00000484733 CHIC2Q9UKJ5 165 aa17.81■□□□□ 0.44
SCFD1-206ENST00000484733 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.8■□□□□ 0.442e-7■□□□□ 10.1
SCFD1-206ENST00000484733 KDM5AP29375 1690 aaKnown RBP17.79■□□□□ 0.44
SCFD1-206ENST00000484733 SCAF11Q99590 1463 aaKnown RBP17.79■□□□□ 0.44
SCFD1-206ENST00000484733 DISP3Q9P2K9 1392 aa17.78■□□□□ 0.44
SCFD1-206ENST00000484733 TOM1O60784 492 aa17.77■□□□□ 0.43
SCFD1-206ENST00000484733 PIK3C2BO00750 1634 aa17.77■□□□□ 0.43
SCFD1-206ENST00000484733 STRCP1A6NGW2 1772 aa17.75■□□□□ 0.43
SCFD1-206ENST00000484733 EFCAB6Q5THR3 1501 aa17.75■□□□□ 0.43
SCFD1-206ENST00000484733 FAM50AQ14320 339 aaKnown RBP17.75■□□□□ 0.43
SCFD1-206ENST00000484733 SYNMO15061 1565 aa17.75■□□□□ 0.43
SCFD1-206ENST00000484733 NOS1P29475 1434 aa17.75■□□□□ 0.43
SCFD1-206ENST00000484733 LTKP29376 864 aa17.75■□□□□ 0.43
SCFD1-206ENST00000484733 TXNDC2Q86VQ3 553 aa17.74■□□□□ 0.43
SCFD1-206ENST00000484733 ANKRD50Q9ULJ7 1429 aa17.73■□□□□ 0.43
SCFD1-206ENST00000484733 TMEM2Q9UHN6 1383 aa17.73■□□□□ 0.43
SCFD1-206ENST00000484733 LRRC7Q96NW7 1537 aa17.73■□□□□ 0.43
SCFD1-206ENST00000484733 EID1Q9Y6B2 187 aa17.73■□□□□ 0.43
SCFD1-206ENST00000484733 RPRD2Q5VT52 1461 aaKnown RBP17.72■□□□□ 0.43
SCFD1-206ENST00000484733 IDI1Q13907 227 aa17.71■□□□□ 0.43
SCFD1-206ENST00000484733 ALKQ9UM73 1620 aa17.71■□□□□ 0.43
SCFD1-206ENST00000484733 SLC52A1Q9NWF4 448 aa17.7■□□□□ 0.42
SCFD1-206ENST00000484733 ILDR2Q71H61 639 aa17.69■□□□□ 0.42
SCFD1-206ENST00000484733 STAG3Q9UJ98 1225 aa17.69■□□□□ 0.42
SCFD1-206ENST00000484733 ROCK1Q13464 1354 aa17.69■□□□□ 0.42
SCFD1-206ENST00000484733 TET3O43151 1660 aa17.69■□□□□ 0.42
SCFD1-206ENST00000484733 ADGRB3O60242 1522 aa17.68■□□□□ 0.42
SCFD1-206ENST00000484733 UNC13BO14795 1591 aa17.68■□□□□ 0.42
SCFD1-206ENST00000484733 PIP4K2BP78356 416 aa17.67■□□□□ 0.42
SCFD1-206ENST00000484733 HSPA1LP34931 641 aa17.66■□□□□ 0.42
SCFD1-206ENST00000484733 GCC2Q8IWJ2 1684 aa17.66■□□□□ 0.42
SCFD1-206ENST00000484733 SCAF1Q9H7N4 1312 aaKnown RBP17.65■□□□□ 0.42
SCFD1-206ENST00000484733 XIRP1Q702N8 1843 aaKnown RBP17.62■□□□□ 0.41
SCFD1-206ENST00000484733 SOCS7O14512 581 aa17.61■□□□□ 0.41
SCFD1-206ENST00000484733 KCNA6P17658 529 aa17.61■□□□□ 0.41
SCFD1-206ENST00000484733 IQGAP3Q86VI3 1631 aa17.61■□□□□ 0.41
SCFD1-206ENST00000484733 ZFYVE9O95405 1425 aa17.59■□□□□ 0.41
SCFD1-206ENST00000484733 E9PCH4 1651 aa17.59■□□□□ 0.41
SCFD1-206ENST00000484733 TMEM131LA2VDJ0 1609 aa17.59■□□□□ 0.41
SCFD1-206ENST00000484733 HDGFP51858 240 aaKnown RBP17.58■□□□□ 0.4
SCFD1-206ENST00000484733 NWD1Q149M9 1564 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms