RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 KDM5DQ9BY66 1539 aa12.28□□□□□ -0.44
USP4-210ENST00000483212 UNC13BO14795 1591 aa12.28□□□□□ -0.44
USP4-210ENST00000483212 TRHP20396 242 aaPredicted RBP12.28□□□□□ -0.44
USP4-210ENST00000483212 MAPK8IP2Q13387 824 aaPredicted RBP12.28□□□□□ -0.44
USP4-210ENST00000483212 YEATS2Q9ULM3 1422 aa12.28□□□□□ -0.44
USP4-210ENST00000483212 DHX29Q7Z478 1369 aaKnown RBP12.27□□□□□ -0.45
USP4-210ENST00000483212 A2MP01023 1474 aa12.27□□□□□ -0.45
USP4-210ENST00000483212 EIF2AK4Q9P2K8 1649 aaKnown RBP12.26□□□□□ -0.45
USP4-210ENST00000483212 BCORL1Q5H9F3 1711 aa12.25□□□□□ -0.45
USP4-210ENST00000483212 PZPP20742 1482 aa12.25□□□□□ -0.45
USP4-210ENST00000483212 ARHGEF40Q8TER5 1519 aa12.25□□□□□ -0.45
USP4-210ENST00000483212 REREQ9P2R6 1566 aa12.25□□□□□ -0.45
USP4-210ENST00000483212 DEPDC5O75140 1603 aa12.25□□□□□ -0.45
USP4-210ENST00000483212 MROH1Q8NDA8 1641 aa12.24□□□□□ -0.45
USP4-210ENST00000483212 ACIN1Q9UKV3 1341 aaKnown RBP12.24□□□□□ -0.45
USP4-210ENST00000483212 VWDEQ8N2E2 1590 aa12.22□□□□□ -0.45
USP4-210ENST00000483212 RNF17Q9BXT8 1623 aaKnown RBP12.22□□□□□ -0.45
USP4-210ENST00000483212 PRDM15P57071 1507 aaPredicted RBP12.21□□□□□ -0.45
USP4-210ENST00000483212 ATP10AO60312 1499 aa12.21□□□□□ -0.45
USP4-210ENST00000483212 C1QBPQ07021 282 aaKnown RBP12.21□□□□□ -0.45
USP4-210ENST00000483212 CCER1Q8TC90 406 aaPredicted RBP12.21□□□□□ -0.45
USP4-210ENST00000483212 IQGAP3Q86VI3 1631 aa12.21□□□□□ -0.46
USP4-210ENST00000483212 SIGLEC1Q9BZZ2 1709 aa12.2□□□□□ -0.46
USP4-210ENST00000483212 MYT1LQ9UL68 1186 aa12.2□□□□□ -0.46
USP4-210ENST00000483212 AGLP35573 1532 aa12.2□□□□□ -0.46
USP4-210ENST00000483212 FAM135AQ9P2D6 1515 aa12.2□□□□□ -0.46
USP4-210ENST00000483212 CLSPNQ9HAW4 1339 aa12.19□□□□□ -0.46
USP4-210ENST00000483212 TRIM52Q96A61 297 aa12.19□□□□□ -0.46
USP4-210ENST00000483212 MPHOSPH9Q99550 1183 aa12.19□□□□□ -0.46
USP4-210ENST00000483212 NUP155O75694 1391 aa12.18□□□□□ -0.46
USP4-210ENST00000483212 LMTK2Q8IWU2 1503 aa12.16□□□□□ -0.46
USP4-210ENST00000483212 KIF3BO15066 747 aa12.16□□□□□ -0.46
USP4-210ENST00000483212 SLC4A1APQ9BWU0 796 aaKnown RBP12.14□□□□□ -0.47
USP4-210ENST00000483212 TET3O43151 1660 aa12.13□□□□□ -0.47
USP4-210ENST00000483212 ANKRD30BQ9BXX2 1392 aa12.13□□□□□ -0.47
USP4-210ENST00000483212 ABCC3O15438 1527 aa12.12□□□□□ -0.47
USP4-210ENST00000483212 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.12□□□□□ -0.47
USP4-210ENST00000483212 EFCAB6Q5THR3 1501 aa12.11□□□□□ -0.47
USP4-210ENST00000483212 E9PCH4 1651 aa12.11□□□□□ -0.47
USP4-210ENST00000483212 PKD2Q13563 968 aa12.11□□□□□ -0.47
USP4-210ENST00000483212 CEP152O94986 1710 aa12.11□□□□□ -0.47
USP4-210ENST00000483212 ZC3H13Q5T200 1668 aaKnown RBP12.1□□□□□ -0.47
USP4-210ENST00000483212 PLA2R1Q13018 1463 aa12.1□□□□□ -0.47
USP4-210ENST00000483212 KANK1Q14678 1352 aa12.1□□□□□ -0.47
USP4-210ENST00000483212 GGT6Q6P531 493 aa12.08□□□□□ -0.48
USP4-210ENST00000483212 CAMSAP1Q5T5Y3 1602 aa12.08□□□□□ -0.48
USP4-210ENST00000483212 PTPRTO14522 1441 aa12.07□□□□□ -0.48
USP4-210ENST00000483212 ZEB1P37275 1124 aaPredicted RBP12.07□□□□□ -0.48
USP4-210ENST00000483212 SIN3AQ96ST3 1273 aa12.07□□□□□ -0.48
USP4-210ENST00000483212 RPRD2Q5VT52 1461 aaKnown RBP12.07□□□□□ -0.48
USP4-210ENST00000483212 NPATQ14207 1427 aa12.06□□□□□ -0.48
USP4-210ENST00000483212 ARHGAP31Q2M1Z3 1444 aa12.06□□□□□ -0.48
USP4-210ENST00000483212 TRPM2O94759 1503 aa12.06□□□□□ -0.48
USP4-210ENST00000483212 SPHKAPQ2M3C7 1700 aa12.04□□□□□ -0.48
USP4-210ENST00000483212 WASHC2CQ9Y4E1 1318 aa12.04□□□□□ -0.48
USP4-210ENST00000483212 CLTCQ00610 1675 aaKnown RBP12.03□□□□□ -0.48
USP4-210ENST00000483212 NOS1P29475 1434 aa12.03□□□□□ -0.48
USP4-210ENST00000483212 TIMELESSQ9UNS1 1208 aa12.01□□□□□ -0.49
USP4-210ENST00000483212 CLTCL1P53675 1640 aa12□□□□□ -0.49
USP4-210ENST00000483212 NEUROD1Q13562 356 aa12□□□□□ -0.49
USP4-210ENST00000483212 CNTLNQ9NXG0 1405 aa12□□□□□ -0.49
USP4-210ENST00000483212 SYNMO15061 1565 aa12□□□□□ -0.49
USP4-210ENST00000483212 MROH2AA6NES4 1674 aa12□□□□□ -0.49
USP4-210ENST00000483212 MLECQ14165 292 aa11.99□□□□□ -0.49
USP4-210ENST00000483212 CCDC144AA2RUR9 1427 aa11.99□□□□□ -0.49
USP4-210ENST00000483212 UGGT1Q9NYU2 1555 aa11.99□□□□□ -0.49
USP4-210ENST00000483212 PIK3C2BO00750 1634 aa11.99□□□□□ -0.49
USP4-210ENST00000483212 PREX1Q8TCU6 1659 aa11.99□□□□□ -0.49
USP4-210ENST00000483212 SPATA31D1Q6ZQQ2 1576 aa11.98□□□□□ -0.49
USP4-210ENST00000483212 ERVK-7P63135 1459 aa11.98□□□□□ -0.49
USP4-210ENST00000483212 ARID4BQ4LE39 1312 aaPredicted RBP11.98□□□□□ -0.49
USP4-210ENST00000483212 ADAMTSL3P82987 1691 aa11.97□□□□□ -0.49
USP4-210ENST00000483212 NEURL4Q96JN8 1562 aa11.97□□□□□ -0.49
USP4-210ENST00000483212 SPATA31E1Q6ZUB1 1445 aa11.97□□□□□ -0.49
USP4-210ENST00000483212 TONSLQ96HA7 1378 aa11.96□□□□□ -0.49
USP4-210ENST00000483212 FER1L4A9Z1Z3 1794 aa11.96□□□□□ -0.49
USP4-210ENST00000483212 ZMYM3Q14202 1370 aa11.95□□□□□ -0.5
USP4-210ENST00000483212 MADDQ8WXG6 1647 aa11.94□□□□□ -0.5
USP4-210ENST00000483212 L3MBTL2Q969R5 705 aa11.94□□□□□ -0.5
USP4-210ENST00000483212 ADGRB3O60242 1522 aa11.94□□□□□ -0.5
USP4-210ENST00000483212 PPP1R15AO75807 674 aaPredicted RBP11.93□□□□□ -0.5
USP4-210ENST00000483212 FBXO31Q5XUX0 539 aaPredicted RBP11.93□□□□□ -0.5
USP4-210ENST00000483212 C3P01024 1663 aa11.93□□□□□ -0.5
USP4-210ENST00000483212 RIMS1Q86UR5 1692 aaKnown RBP11.91□□□□□ -0.5
USP4-210ENST00000483212 UHRF1BP1Q6BDS2 1440 aa11.9□□□□□ -0.5
USP4-210ENST00000483212 CFAP65Q6ZU64 1925 aaKnown RBP11.9□□□□□ -0.51
USP4-210ENST00000483212 TMEM131LA2VDJ0 1609 aa11.89□□□□□ -0.51
USP4-210ENST00000483212 KIF1BO60333 1816 aa11.89□□□□□ -0.51
USP4-210ENST00000483212 IDI1Q13907 227 aa11.89□□□□□ -0.51
USP4-210ENST00000483212 ESF1Q9H501 851 aaKnown RBP11.89□□□□□ -0.51
USP4-210ENST00000483212 IFT172Q9UG01 1749 aa11.89□□□□□ -0.51
USP4-210ENST00000483212 SLC52A1Q9NWF4 448 aa11.88□□□□□ -0.51
USP4-210ENST00000483212 DCAF8L1A6NGE4 600 aa11.87□□□□□ -0.51
USP4-210ENST00000483212 NBPF8Q3BBV2 869 aa11.87□□□□□ -0.51
USP4-210ENST00000483212 TNRQ92752 1358 aa11.87□□□□□ -0.51
USP4-210ENST00000483212 CEBPAP49715 358 aaPredicted RBP11.86□□□□□ -0.51
USP4-210ENST00000483212 MYOM2P54296 1465 aa11.86□□□□□ -0.51
USP4-210ENST00000483212 NEXMIFQ5QGS0 1516 aa11.86□□□□□ -0.51
USP4-210ENST00000483212 PRAG1Q86YV5 1406 aa11.86□□□□□ -0.51
USP4-210ENST00000483212 KDM5AP29375 1690 aaKnown RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms