RNA–Protein interactions for RNA: ENST00000482563.1

RBM39-233, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 1,737 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-233	ENST00000482563	FCHSD2	O94868	740 aa		11.33	□□□□□ -0.6
RBM39-233	ENST00000482563	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.33	□□□□□ -0.6
RBM39-233	ENST00000482563	FAM177A1	Q8N128	213 aa	Predicted RBP	11.33	□□□□□ -0.6
RBM39-233	ENST00000482563	POM121C	A8CG34	1229 aa		11.32	□□□□□ -0.6
RBM39-233	ENST00000482563	CALR3	Q96L12	384 aa	Known RBP	11.32	□□□□□ -0.6
RBM39-233	ENST00000482563	POLR3E	Q9NVU0	708 aa		11.32	□□□□□ -0.6
RBM39-233	ENST00000482563	DSG2	Q14126	1118 aa		11.3	□□□□□ -0.6
RBM39-233	ENST00000482563	GLMN	Q92990	594 aa		11.3	□□□□□ -0.6
RBM39-233	ENST00000482563	IVNS1ABP	Q9Y6Y0	642 aa		11.3	□□□□□ -0.6
RBM39-233	ENST00000482563	SND1	Q7KZF4	910 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
RBM39-233	ENST00000482563	GDPD2	Q9HCC8	539 aa		11.29	□□□□□ -0.6
RBM39-233	ENST00000482563	UST	Q9Y2C2	406 aa		11.29	□□□□□ -0.6
RBM39-233	ENST00000482563	PRIM1	P49642	420 aa	Known RBP	11.28	□□□□□ -0.6
RBM39-233	ENST00000482563	SRPK2	P78362	688 aa	Known RBP	11.28	□□□□□ -0.6
RBM39-233	ENST00000482563	BANK1	Q8NDB2	785 aa		11.28	□□□□□ -0.6
RBM39-233	ENST00000482563	PBXIP1	Q96AQ6	731 aa		11.28	□□□□□ -0.6
RBM39-233	ENST00000482563	SP7	Q8TDD2	431 aa	Predicted RBP	11.27	□□□□□ -0.61
RBM39-233	ENST00000482563	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	11.26	□□□□□ -0.61
RBM39-233	ENST00000482563	RFC5	P40937	340 aa		11.26	□□□□□ -0.61
RBM39-233	ENST00000482563	MTMR14	Q8NCE2	650 aa		11.26	□□□□□ -0.61
RBM39-233	ENST00000482563	TBC1D12	O60347	775 aa		11.25	□□□□□ -0.61
RBM39-233	ENST00000482563	SSTR3	P32745	418 aa	Predicted RBP	11.25	□□□□□ -0.61
RBM39-233	ENST00000482563	PTGDR	Q13258	359 aa		11.24	□□□□□ -0.61
RBM39-233	ENST00000482563	PHOX2B	Q99453	314 aa		11.24	□□□□□ -0.61
RBM39-233	ENST00000482563	BEGAIN	Q9BUH8	593 aa		11.24	□□□□□ -0.61
RBM39-233	ENST00000482563	MYSM1	Q5VVJ2	828 aa		11.23	□□□□□ -0.61
RBM39-233	ENST00000482563	MDM2	Q00987	491 aa	Predicted RBP	11.23	□□□□□ -0.61
RBM39-233	ENST00000482563	AKT1S1	Q96B36	256 aa		11.23	□□□□□ -0.61
RBM39-233	ENST00000482563	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.23	□□□□□ -0.61
RBM39-233	ENST00000482563	MAP3K13	O43283	966 aa		11.22	□□□□□ -0.61
RBM39-233	ENST00000482563	CLCN1	P35523	988 aa		11.22	□□□□□ -0.61
RBM39-233	ENST00000482563	GPCPD1	Q9NPB8	672 aa		11.22	□□□□□ -0.61
RBM39-233	ENST00000482563	CFAP70	Q5T0N1	1121 aa		11.21	□□□□□ -0.62
RBM39-233	ENST00000482563	REM2	Q8IYK8	340 aa	Predicted RBP	11.21	□□□□□ -0.62
RBM39-233	ENST00000482563	RBM47	A0AV96	593 aa	Known RBP	11.19	□□□□□ -0.62
RBM39-233	ENST00000482563	CSB-PGBD3	P0DP91	1061 aa		11.19	□□□□□ -0.62
RBM39-233	ENST00000482563	RFX1	P22670	979 aa		11.19	□□□□□ -0.62
RBM39-233	ENST00000482563	CHRDL2	Q6WN34	429 aa		11.19	□□□□□ -0.62
RBM39-233	ENST00000482563	ADAMTS19	Q8TE59	1207 aa		11.19	□□□□□ -0.62
RBM39-233	ENST00000482563	KIAA1522	Q9P206	1035 aa	Predicted RBP	11.19	□□□□□ -0.62
RBM39-233	ENST00000482563	ABL2	P42684	1182 aa		11.17	□□□□□ -0.62
RBM39-233	ENST00000482563	CLK2	P49760	499 aa	Known RBP	11.17	□□□□□ -0.62
RBM39-233	ENST00000482563	CHADL	Q6NUI6	762 aa		11.17	□□□□□ -0.62
RBM39-233	ENST00000482563	CCDC125	Q86Z20	511 aa		11.16	□□□□□ -0.62
RBM39-233	ENST00000482563	KIF12	Q96FN5	646 aa		11.16	□□□□□ -0.62
RBM39-233	ENST00000482563	MYT1L	Q9UL68	1186 aa		11.16	□□□□□ -0.62
RBM39-233	ENST00000482563	TBC1D2B	Q9UPU7	963 aa		11.15	□□□□□ -0.62
RBM39-233	ENST00000482563	FOXK1	P85037	733 aa		11.15	□□□□□ -0.63
RBM39-233	ENST00000482563	FAM217B	Q9NTX9	383 aa	Predicted RBP	11.15	□□□□□ -0.63
RBM39-233	ENST00000482563	DDX12P	Q92771	950 aa		11.14	□□□□□ -0.63
RBM39-233	ENST00000482563	TMEM88B	A6NKF7	163 aa		11.13	□□□□□ -0.63
RBM39-233	ENST00000482563	TMEM259	Q4ZIN3	620 aa		11.13	□□□□□ -0.63
RBM39-233	ENST00000482563	TXNDC2	Q86VQ3	553 aa		11.13	□□□□□ -0.63
RBM39-233	ENST00000482563	PTGER2	P43116	358 aa		11.12	□□□□□ -0.63
RBM39-233	ENST00000482563	PPP2R2D	Q66LE6	453 aa		11.12	□□□□□ -0.63
RBM39-233	ENST00000482563	VRTN	Q9H8Y1	702 aa		11.12	□□□□□ -0.63
RBM39-233	ENST00000482563	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.12	□□□□□ -0.63
RBM39-233	ENST00000482563	RBM42	Q9BTD8	480 aa	Known RBP	11.12	□□□□□ -0.63
RBM39-233	ENST00000482563	HDGFL1	Q5TGJ6	251 aa		11.11	□□□□□ -0.63
RBM39-233	ENST00000482563	WWC1	Q8IX03	1113 aa		11.1	□□□□□ -0.63
RBM39-233	ENST00000482563	LIMD1	Q9UGP4	676 aa		11.1	□□□□□ -0.63
RBM39-233	ENST00000482563	MAP3K9	P80192	1104 aa		11.09	□□□□□ -0.63
RBM39-233	ENST00000482563	PITPNM1	O00562	1244 aa		11.09	□□□□□ -0.63
RBM39-233	ENST00000482563	GNE	Q9Y223	722 aa	Known RBP	11.09	□□□□□ -0.63
RBM39-233	ENST00000482563	PLPP6	Q8IY26	295 aa		11.08	□□□□□ -0.64
RBM39-233	ENST00000482563	NLRP7	Q8WX94	980 aa		11.08	□□□□□ -0.64
RBM39-233	ENST00000482563	MRRF	Q96E11	262 aa	Known RBP	11.08	□□□□□ -0.64
RBM39-233	ENST00000482563	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.08	□□□□□ -0.64
RBM39-233	ENST00000482563	TBC1D2	Q9BYX2	928 aa		11.07	□□□□□ -0.64
RBM39-233	ENST00000482563	PPP1R12C	Q9BZL4	782 aa		11.06	□□□□□ -0.64
RBM39-233	ENST00000482563	SOCS7	O14512	581 aa		11.06	□□□□□ -0.64
RBM39-233	ENST00000482563	ILDR1	Q86SU0	546 aa	Predicted RBP	11.05	□□□□□ -0.64
RBM39-233	ENST00000482563	CDHR5	Q9HBB8	845 aa		11.05	□□□□□ -0.64
RBM39-233	ENST00000482563	NOM1	Q5C9Z4	860 aa	Known RBP	11.04	□□□□□ -0.64
RBM39-233	ENST00000482563	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	11.04	□□□□□ -0.64
RBM39-233	ENST00000482563	PPM1G	O15355	546 aa	Predicted RBP	11.01	□□□□□ -0.65
RBM39-233	ENST00000482563	TMC2	Q8TDI7	906 aa		11.01	□□□□□ -0.65
RBM39-233	ENST00000482563	PALM3	A6NDB9	673 aa	Predicted RBP	11.01	□□□□□ -0.65
RBM39-233	ENST00000482563	GOLGA2	Q08379	1002 aa		11	□□□□□ -0.65
RBM39-233	ENST00000482563	FAM161A	Q3B820	660 aa		11	□□□□□ -0.65
RBM39-233	ENST00000482563	UPF1	Q92900	1129 aa	Known RBP eCLIP	11	□□□□□ -0.65
RBM39-233	ENST00000482563	GPR37L1	O60883	481 aa		10.99	□□□□□ -0.65
RBM39-233	ENST00000482563	ATG7	O95352	703 aa		10.98	□□□□□ -0.65
RBM39-233	ENST00000482563	ZNF16	P17020	682 aa	Predicted RBP	10.98	□□□□□ -0.65
RBM39-233	ENST00000482563	CDCA8	Q53HL2	280 aa		10.98	□□□□□ -0.65
RBM39-233	ENST00000482563	LMOD1	P29536	600 aa	Predicted RBP	10.98	□□□□□ -0.65
RBM39-233	ENST00000482563	TMEM106C	Q9BVX2	250 aa		10.98	□□□□□ -0.65
RBM39-233	ENST00000482563	SMARCA5	O60264	1052 aa	Predicted RBP	10.97	□□□□□ -0.65
RBM39-233	ENST00000482563	METTL3	Q86U44	580 aa	Known RBP	10.97	□□□□□ -0.65
RBM39-233	ENST00000482563	GJD4	Q96KN9	370 aa	Predicted RBP	10.97	□□□□□ -0.65
RBM39-233	ENST00000482563	UCN2	Q96RP3	112 aa		10.97	□□□□□ -0.65
RBM39-233	ENST00000482563	KIF3C	O14782	793 aa		10.96	□□□□□ -0.65
RBM39-233	ENST00000482563	RIC3	Q7Z5B4	369 aa		10.96	□□□□□ -0.65
RBM39-233	ENST00000482563	C2orf72	A6NCS6	295 aa		10.95	□□□□□ -0.66
RBM39-233	ENST00000482563	DPY19L2	Q6NUT2	758 aa		10.95	□□□□□ -0.66
RBM39-233	ENST00000482563	MICALL2	Q8IY33	904 aa		10.95	□□□□□ -0.66
RBM39-233	ENST00000482563	DHX37	Q8IY37	1157 aa	Known RBP	10.95	□□□□□ -0.66
RBM39-233	ENST00000482563	PRM3	Q9NNZ6	103 aa		10.95	□□□□□ -0.66
RBM39-233	ENST00000482563	TCF3	P15923	654 aa		10.95	□□□□□ -0.66
RBM39-233	ENST00000482563	SPATA32	Q96LK8	384 aa		10.94	□□□□□ -0.66

Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms