RNA–Protein interactions for RNA: ENST00000482558.5

SNX13-208, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 1,139 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-208ENST00000482558 GOLGA8CPA6NN73 597 aa12.91□□□□□ -0.34
SNX13-208ENST00000482558 MRPL50Q8N5N7 158 aaKnown RBP12.91□□□□□ -0.34
SNX13-208ENST00000482558 ZDHHC16Q969W1 377 aa12.91□□□□□ -0.34
SNX13-208ENST00000482558 TIMELESSQ9UNS1 1208 aa12.91□□□□□ -0.34
SNX13-208ENST00000482558 WNT2BQ93097 391 aa12.9□□□□□ -0.34
SNX13-208ENST00000482558 NBPF3Q9H094 633 aa12.9□□□□□ -0.34
SNX13-208ENST00000482558 ABCC9O60706 1549 aa12.89□□□□□ -0.35
SNX13-208ENST00000482558 EVI5O60447 810 aa12.89□□□□□ -0.35
SNX13-208ENST00000482558 PAXIP1Q6ZW49 1069 aaPredicted RBP12.88□□□□□ -0.35
SNX13-208ENST00000482558 A0A0G2JS52 829 aa12.87□□□□□ -0.35
SNX13-208ENST00000482558 CFAP44Q96MT7 982 aa12.87□□□□□ -0.35
SNX13-208ENST00000482558 RB1CC1Q8TDY2 1594 aa12.86□□□□□ -0.35
SNX13-208ENST00000482558 ADAM33Q9BZ11 813 aa12.86□□□□□ -0.35
SNX13-208ENST00000482558 SCRIBQ14160 1630 aa12.86□□□□□ -0.35
SNX13-208ENST00000482558 DDX27Q96GQ7 796 aaKnown RBP12.83□□□□□ -0.36
SNX13-208ENST00000482558 SPRYD3Q8NCJ5 442 aa12.82□□□□□ -0.36
SNX13-208ENST00000482558 TULP1O00294 542 aaPredicted RBP12.81□□□□□ -0.36
SNX13-208ENST00000482558 MFSD10Q14728 455 aa12.81□□□□□ -0.36
SNX13-208ENST00000482558 PPP1R3GB7ZBB8 358 aa12.8□□□□□ -0.36
SNX13-208ENST00000482558 MAP3K9P80192 1104 aa12.8□□□□□ -0.36
SNX13-208ENST00000482558 LARP6Q9BRS8 491 aaKnown RBP12.8□□□□□ -0.36
SNX13-208ENST00000482558 IRX2Q9BZI1 471 aaPredicted RBP12.8□□□□□ -0.36
SNX13-208ENST00000482558 RABGEF1Q9UJ41 708 aa12.79□□□□□ -0.36
SNX13-208ENST00000482558 ERICH6Q7L0X2 663 aa12.78□□□□□ -0.36
SNX13-208ENST00000482558 GTPBP6O43824 516 aaPredicted RBP12.77□□□□□ -0.37
SNX13-208ENST00000482558 FBXW7Q969H0 707 aa12.76□□□□□ -0.37
SNX13-208ENST00000482558 ITGBL1O95965 494 aaPredicted RBP12.75□□□□□ -0.37
SNX13-208ENST00000482558 ANKK1Q8NFD2 765 aa12.75□□□□□ -0.37
SNX13-208ENST00000482558 PCDHGA10Q9Y5H3 936 aa12.75□□□□□ -0.37
SNX13-208ENST00000482558 LAPTM4BQ86VI4 370 aa12.74□□□□□ -0.37
SNX13-208ENST00000482558 EMILIN3Q9NT22 766 aa12.73□□□□□ -0.37
SNX13-208ENST00000482558 RSF1Q96T23 1441 aaPredicted RBP12.71□□□□□ -0.37
SNX13-208ENST00000482558 PHF14O94880 888 aa12.71□□□□□ -0.37
SNX13-208ENST00000482558 TYW1BQ6NUM6 668 aa12.71□□□□□ -0.37
SNX13-208ENST00000482558 NYAP1Q6ZVC0 841 aa12.71□□□□□ -0.37
SNX13-208ENST00000482558 HOMEZQ8IX15 550 aa12.7□□□□□ -0.38
SNX13-208ENST00000482558 ONECUT3O60422 494 aaPredicted RBP12.69□□□□□ -0.38
SNX13-208ENST00000482558 COL9A1P20849 921 aa12.69□□□□□ -0.38
SNX13-208ENST00000482558 PROX2Q3B8N5 592 aa12.69□□□□□ -0.38
SNX13-208ENST00000482558 SOWAHBA6NEL2 793 aa12.67□□□□□ -0.38
SNX13-208ENST00000482558 GTF3C3Q9Y5Q9 886 aa12.65□□□□□ -0.38
SNX13-208ENST00000482558 BCAMP50895 628 aa12.63□□□□□ -0.39
SNX13-208ENST00000482558 ZFRQ96KR1 1074 aaKnown RBP12.63□□□□□ -0.39
SNX13-208ENST00000482558 EPAS1Q99814 870 aa12.63□□□□□ -0.39
SNX13-208ENST00000482558 TSHZ2Q9NRE2 1034 aa12.62□□□□□ -0.39
SNX13-208ENST00000482558 KIAA1468Q9P260 1216 aa12.62□□□□□ -0.39
SNX13-208ENST00000482558 CAMK2BQ13554 666 aa12.59□□□□□ -0.39
SNX13-208ENST00000482558 C6orf132Q5T0Z8 1188 aa12.59□□□□□ -0.39
SNX13-208ENST00000482558 KCNC4Q03721 635 aa12.58□□□□□ -0.4
SNX13-208ENST00000482558 BAZ1AQ9NRL2 1556 aaPredicted RBP12.58□□□□□ -0.4
SNX13-208ENST00000482558 WBP1LQ9NX94 342 aa12.57□□□□□ -0.4
SNX13-208ENST00000482558 KDM2AQ9Y2K7 1162 aa12.57□□□□□ -0.4
SNX13-208ENST00000482558 TRIM6-TRIM34B2RNG4 842 aa12.56□□□□□ -0.4
SNX13-208ENST00000482558 FAM98CQ17RN3 349 aaKnown RBP12.56□□□□□ -0.4
SNX13-208ENST00000482558 CADPS2Q86UW7 1296 aa12.55□□□□□ -0.4
SNX13-208ENST00000482558 SEPT9Q9UHD8 586 aaPredicted RBP12.53□□□□□ -0.4
SNX13-208ENST00000482558 TSR3Q9UJK0 312 aaKnown RBP12.52□□□□□ -0.41
SNX13-208ENST00000482558 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.51□□□□□ -0.41
SNX13-208ENST00000482558 CECR2Q9BXF3 1484 aa12.51□□□□□ -0.41
SNX13-208ENST00000482558 MROH2BQ7Z745 1585 aa12.51□□□□□ -0.41
SNX13-208ENST00000482558 LRCH3Q96II8 777 aa12.5□□□□□ -0.41
SNX13-208ENST00000482558 DPYSL4O14531 572 aa12.49□□□□□ -0.41
SNX13-208ENST00000482558 Q6ZNB5 142 aa12.49□□□□□ -0.41
SNX13-208ENST00000482558 LAPTM4AQ15012 233 aa12.48□□□□□ -0.41
SNX13-208ENST00000482558 HPS5Q9UPZ3 1129 aa12.47□□□□□ -0.41
SNX13-208ENST00000482558 UNC13AQ9UPW8 1703 aa12.47□□□□□ -0.41
SNX13-208ENST00000482558 RANGAP1P46060 587 aaPredicted RBP12.45□□□□□ -0.42
SNX13-208ENST00000482558 PACS2Q86VP3 889 aa12.45□□□□□ -0.42
SNX13-208ENST00000482558 RBM33Q96EV2 1170 aaKnown RBP12.44□□□□□ -0.42
SNX13-208ENST00000482558 SMARCA4P51532 1647 aa12.42□□□□□ -0.42
SNX13-208ENST00000482558 EN1Q05925 392 aaPredicted RBP12.42□□□□□ -0.42
SNX13-208ENST00000482558 DDX12PQ92771 950 aa12.42□□□□□ -0.42
SNX13-208ENST00000482558 TSKSQ9UJT2 592 aa12.4□□□□□ -0.42
SNX13-208ENST00000482558 WIZO95785 1651 aa12.4□□□□□ -0.42
SNX13-208ENST00000482558 TOP2AP11388 1531 aaKnown RBP12.38□□□□□ -0.43
SNX13-208ENST00000482558 PPP4CP60510 307 aa12.38□□□□□ -0.43
SNX13-208ENST00000482558 PDIA6Q15084 440 aa12.38□□□□□ -0.43
SNX13-208ENST00000482558 TMEM132AQ24JP5 1023 aa12.38□□□□□ -0.43
SNX13-208ENST00000482558 MAP3K7O43318 606 aa12.37□□□□□ -0.43
SNX13-208ENST00000482558 NBR1Q14596 966 aa12.37□□□□□ -0.43
SNX13-208ENST00000482558 SPDYE16A6NNV3 312 aaPredicted RBP12.36□□□□□ -0.43
SNX13-208ENST00000482558 BICRAQ9NZM4 1560 aa12.35□□□□□ -0.43
SNX13-208ENST00000482558 TSR1Q2NL82 804 aaKnown RBP12.35□□□□□ -0.43
SNX13-208ENST00000482558 TJAP1Q5JTD0 557 aa12.35□□□□□ -0.43
SNX13-208ENST00000482558 CERKQ8TCT0 537 aa12.35□□□□□ -0.43
SNX13-208ENST00000482558 PEG3Q9GZU2 1588 aa12.32□□□□□ -0.44
SNX13-208ENST00000482558 GFRA3O60609 400 aa12.32□□□□□ -0.44
SNX13-208ENST00000482558 PRSS12P56730 875 aa12.32□□□□□ -0.44
SNX13-208ENST00000482558 C14orf37Q86TY3 774 aa12.32□□□□□ -0.44
SNX13-208ENST00000482558 CDCA7LQ96GN5 454 aa12.32□□□□□ -0.44
SNX13-208ENST00000482558 SAMD7Q7Z3H4 446 aa12.31□□□□□ -0.44
SNX13-208ENST00000482558 TRAF7Q6Q0C0 670 aa12.3□□□□□ -0.44
SNX13-208ENST00000482558 IL21Q9HBE4 155 aa12.3□□□□□ -0.44
SNX13-208ENST00000482558 V9GY48 417 aaPredicted RBP12.29□□□□□ -0.44
SNX13-208ENST00000482558 NBPF26B4DH59 902 aa12.28□□□□□ -0.44
SNX13-208ENST00000482558 LCE2BO14633 110 aa12.28□□□□□ -0.44
SNX13-208ENST00000482558 NRG2O14511 850 aaPredicted RBP12.27□□□□□ -0.45
SNX13-208ENST00000482558 MTRQ99707 1265 aa12.27□□□□□ -0.45
SNX13-208ENST00000482558 PRKD2Q9BZL6 878 aa12.27□□□□□ -0.45
SNX13-208ENST00000482558 TATDN2Q93075 761 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms