RNA–Protein interactions for RNA: ENST00000482192.5

HMGN1-213, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 793 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-213ENST00000482192 DUOX2Q9NRD8 1548 aa18.4■□□□□ 0.54
HMGN1-213ENST00000482192 RNF17Q9BXT8 1623 aaKnown RBP18.38■□□□□ 0.53
HMGN1-213ENST00000482192 KIF15Q9NS87 1388 aa18.38■□□□□ 0.53
HMGN1-213ENST00000482192 PTPRKQ15262 1439 aa18.38■□□□□ 0.53
HMGN1-213ENST00000482192 WASHC2CQ9Y4E1 1318 aa18.37■□□□□ 0.53
HMGN1-213ENST00000482192 SETD1BQ9UPS6 1966 aaKnown RBP18.37■□□□□ 0.53
HMGN1-213ENST00000482192 FAM50AQ14320 339 aaKnown RBP18.36■□□□□ 0.53
HMGN1-213ENST00000482192 ERBINQ96RT1 1412 aa18.36■□□□□ 0.53
HMGN1-213ENST00000482192 ANKRD30AQ9BXX3 1397 aa18.35■□□□□ 0.53
HMGN1-213ENST00000482192 RRP7BPQ9NSQ0 103 aa18.34■□□□□ 0.53
HMGN1-213ENST00000482192 ZC3H13Q5T200 1668 aaKnown RBP18.33■□□□□ 0.52
HMGN1-213ENST00000482192 MYO3AQ8NEV4 1616 aa18.33■□□□□ 0.52
HMGN1-213ENST00000482192 PZPP20742 1482 aa18.33■□□□□ 0.52
HMGN1-213ENST00000482192 MROH1Q8NDA8 1641 aa18.31■□□□□ 0.52
HMGN1-213ENST00000482192 CHIC2Q9UKJ5 165 aa18.31■□□□□ 0.52
HMGN1-213ENST00000482192 ABCC3O15438 1527 aa18.31■□□□□ 0.52
HMGN1-213ENST00000482192 ADGRL2O95490 1459 aa18.31■□□□□ 0.52
HMGN1-213ENST00000482192 NCOA1Q15788 1441 aa18.31■□□□□ 0.52
HMGN1-213ENST00000482192 PRDM15P57071 1507 aaPredicted RBP18.29■□□□□ 0.52
HMGN1-213ENST00000482192 ZNF142P52746 1687 aaPredicted RBP18.29■□□□□ 0.52
HMGN1-213ENST00000482192 CEP170BQ9Y4F5 1589 aaPredicted RBP18.29■□□□□ 0.52
HMGN1-213ENST00000482192 PPARGC1BQ86YN6 1023 aaKnown RBP18.28■□□□□ 0.52
HMGN1-213ENST00000482192 DMRT2Q9Y5R5 561 aa18.28■□□□□ 0.52
HMGN1-213ENST00000482192 FBXO31Q5XUX0 539 aaPredicted RBP18.27■□□□□ 0.52
HMGN1-213ENST00000482192 TNRQ92752 1358 aa18.27■□□□□ 0.51
HMGN1-213ENST00000482192 STRCQ7RTU9 1775 aa18.27■□□□□ 0.51
HMGN1-213ENST00000482192 DEPDC5O75140 1603 aa18.26■□□□□ 0.51
HMGN1-213ENST00000482192 CAMSAP1Q5T5Y3 1602 aa18.25■□□□□ 0.51
HMGN1-213ENST00000482192 A2ML1A8K2U0 1454 aa18.25■□□□□ 0.51
HMGN1-213ENST00000482192 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.24■□□□□ 0.51
HMGN1-213ENST00000482192 PLA2R1Q13018 1463 aa18.23■□□□□ 0.51
HMGN1-213ENST00000482192 KANK1Q14678 1352 aa18.23■□□□□ 0.51
HMGN1-213ENST00000482192 CEP152O94986 1710 aa18.23■□□□□ 0.51
HMGN1-213ENST00000482192 PTPRTO14522 1441 aa18.22■□□□□ 0.51
HMGN1-213ENST00000482192 SPATA31D1Q6ZQQ2 1576 aa18.21■□□□□ 0.51
HMGN1-213ENST00000482192 NLRP1Q9C000 1473 aa18.21■□□□□ 0.51
HMGN1-213ENST00000482192 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.21■□□□□ 0.511e-6■■□□□ 12.8
HMGN1-213ENST00000482192 ANKRD50Q9ULJ7 1429 aa18.21■□□□□ 0.51
HMGN1-213ENST00000482192 ERVK-7P63135 1459 aa18.2■□□□□ 0.5
HMGN1-213ENST00000482192 ROCK1Q13464 1354 aa18.2■□□□□ 0.5
HMGN1-213ENST00000482192 ARHGAP31Q2M1Z3 1444 aa18.2■□□□□ 0.5
HMGN1-213ENST00000482192 VWDEQ8N2E2 1590 aa18.18■□□□□ 0.5
HMGN1-213ENST00000482192 LMTK2Q8IWU2 1503 aa18.18■□□□□ 0.5
HMGN1-213ENST00000482192 PKD2Q13563 968 aa18.17■□□□□ 0.5
HMGN1-213ENST00000482192 RRBP1Q9P2E9 1410 aaKnown RBP18.16■□□□□ 0.5
HMGN1-213ENST00000482192 ILDR1Q86SU0 546 aaPredicted RBP18.16■□□□□ 0.5
HMGN1-213ENST00000482192 ITGAEP38570 1179 aa18.15■□□□□ 0.5
HMGN1-213ENST00000482192 UGGT1Q9NYU2 1555 aa18.15■□□□□ 0.5
HMGN1-213ENST00000482192 NCKAP5LQ9HCH0 1330 aa18.15■□□□□ 0.5
HMGN1-213ENST00000482192 THEMISQ8N1K5 641 aaPredicted RBP18.13■□□□□ 0.49
HMGN1-213ENST00000482192 EFCAB6Q5THR3 1501 aa18.13■□□□□ 0.49
HMGN1-213ENST00000482192 UNC13BO14795 1591 aa18.11■□□□□ 0.49
HMGN1-213ENST00000482192 CERKQ8TCT0 537 aa18.1■□□□□ 0.49
HMGN1-213ENST00000482192 FBXO41Q8TF61 875 aa18.1■□□□□ 0.49
HMGN1-213ENST00000482192 POLR1AO95602 1720 aaPredicted RBP18.09■□□□□ 0.49
HMGN1-213ENST00000482192 RPRD2Q5VT52 1461 aaKnown RBP18.08■□□□□ 0.49
HMGN1-213ENST00000482192 ANKLE2Q86XL3 938 aa18.07■□□□□ 0.48
HMGN1-213ENST00000482192 NEURL4Q96JN8 1562 aa18.07■□□□□ 0.48
HMGN1-213ENST00000482192 TET3O43151 1660 aa18.06■□□□□ 0.48
HMGN1-213ENST00000482192 UBR1Q8IWV7 1749 aa18.06■□□□□ 0.48
HMGN1-213ENST00000482192 NOS1P29475 1434 aa18.05■□□□□ 0.48
HMGN1-213ENST00000482192 LTBP4Q8N2S1 1624 aa18.05■□□□□ 0.48
HMGN1-213ENST00000482192 SYNMO15061 1565 aa18.04■□□□□ 0.48
HMGN1-213ENST00000482192 MED14O60244 1454 aa18.03■□□□□ 0.48
HMGN1-213ENST00000482192 IQGAP3Q86VI3 1631 aa18.03■□□□□ 0.48
HMGN1-213ENST00000482192 GCC2Q8IWJ2 1684 aa18.03■□□□□ 0.48
HMGN1-213ENST00000482192 PIK3C2BO00750 1634 aa18.02■□□□□ 0.48
HMGN1-213ENST00000482192 CFAP65Q6ZU64 1925 aaKnown RBP18.02■□□□□ 0.48
HMGN1-213ENST00000482192 NPHP4O75161 1426 aaPredicted RBP18.02■□□□□ 0.48
HMGN1-213ENST00000482192 NUP155O75694 1391 aa18.02■□□□□ 0.47
HMGN1-213ENST00000482192 ZNF335Q9H4Z2 1342 aaPredicted RBP18.01■□□□□ 0.47
HMGN1-213ENST00000482192 KDM5AP29375 1690 aaKnown RBP18.01■□□□□ 0.47
HMGN1-213ENST00000482192 SLIT1O75093 1534 aa18■□□□□ 0.47
HMGN1-213ENST00000482192 SLC52A1Q9NWF4 448 aa18■□□□□ 0.47
HMGN1-213ENST00000482192 STAG3Q9UJ98 1225 aa18■□□□□ 0.47
HMGN1-213ENST00000482192 ARHGAP23Q9P227 1491 aa18■□□□□ 0.47
HMGN1-213ENST00000482192 IDI1Q13907 227 aa17.99■□□□□ 0.47
HMGN1-213ENST00000482192 IQSEC2Q5JU85 1478 aa17.99■□□□□ 0.47
HMGN1-213ENST00000482192 SCAF11Q99590 1463 aaKnown RBP17.99■□□□□ 0.47
HMGN1-213ENST00000482192 NAIPQ13075 1403 aa17.98■□□□□ 0.47
HMGN1-213ENST00000482192 IQGAP1P46940 1657 aa17.98■□□□□ 0.47
HMGN1-213ENST00000482192 ADGRB3O60242 1522 aa17.98■□□□□ 0.47
HMGN1-213ENST00000482192 E9PCH4 1651 aa17.97■□□□□ 0.47
HMGN1-213ENST00000482192 TMEM2Q9UHN6 1383 aa17.97■□□□□ 0.47
HMGN1-213ENST00000482192 HFM1A2PYH4 1435 aa17.97■□□□□ 0.47
HMGN1-213ENST00000482192 EID1Q9Y6B2 187 aa17.96■□□□□ 0.47
HMGN1-213ENST00000482192 TXNDC2Q86VQ3 553 aa17.95■□□□□ 0.46
HMGN1-213ENST00000482192 LTKP29376 864 aa17.93■□□□□ 0.46
HMGN1-213ENST00000482192 CPS1P31327 1500 aa17.93■□□□□ 0.46
HMGN1-213ENST00000482192 TMEM131LA2VDJ0 1609 aa17.88■□□□□ 0.45
HMGN1-213ENST00000482192 ZFYVE9O95405 1425 aa17.85■□□□□ 0.45
HMGN1-213ENST00000482192 HDGFP51858 240 aaKnown RBP17.85■□□□□ 0.45
HMGN1-213ENST00000482192 SPHKAPQ2M3C7 1700 aa17.85■□□□□ 0.45
HMGN1-213ENST00000482192 TRIM52Q96A61 297 aa17.85■□□□□ 0.45
HMGN1-213ENST00000482192 CHGAP10645 457 aaKnown RBP17.84■□□□□ 0.45
HMGN1-213ENST00000482192 RIMS2Q9UQ26 1411 aa17.83■□□□□ 0.45
HMGN1-213ENST00000482192 TRPM2O94759 1503 aa17.82■□□□□ 0.44
HMGN1-213ENST00000482192 UBAP1LF5GYI3 381 aa17.81■□□□□ 0.44
HMGN1-213ENST00000482192 PPP1R15AO75807 674 aaPredicted RBP17.81■□□□□ 0.44
HMGN1-213ENST00000482192 MYO5BQ9ULV0 1848 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms