RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 CFDP1Q9UEE9 299 aaPredicted RBP24.44■■□□□ 1.5
CCDC88B-207ENST00000479965 NESP48681 1621 aa24.43■■□□□ 1.5
CCDC88B-207ENST00000479965 SLKQ9H2G2 1235 aaPredicted RBP24.41■■□□□ 1.5
CCDC88B-207ENST00000479965 KIF14Q15058 1648 aa24.4■■□□□ 1.5
CCDC88B-207ENST00000479965 PARD3Q8TEW0 1356 aa24.39■■□□□ 1.49
CCDC88B-207ENST00000479965 RALGAPBQ86X10 1494 aa24.37■■□□□ 1.49
CCDC88B-207ENST00000479965 NUP155O75694 1391 aa24.37■■□□□ 1.49
CCDC88B-207ENST00000479965 RGL3Q3MIN7 710 aa24.37■■□□□ 1.49
CCDC88B-207ENST00000479965 ADAMTS8Q9UP79 889 aa24.36■■□□□ 1.49
CCDC88B-207ENST00000479965 DNMT1P26358 1616 aaKnown RBP24.35■■□□□ 1.49
CCDC88B-207ENST00000479965 PER1O15534 1290 aaPredicted RBP24.34■■□□□ 1.49
CCDC88B-207ENST00000479965 PANK3Q9H999 370 aa24.34■■□□□ 1.49
CCDC88B-207ENST00000479965 RRAGDQ9NQL2 400 aaPredicted RBP24.34■■□□□ 1.49
CCDC88B-207ENST00000479965 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.33■■□□□ 1.48
CCDC88B-207ENST00000479965 NBPF1Q3BBV0 1214 aa24.3■■□□□ 1.48
CCDC88B-207ENST00000479965 UHRF1BP1Q6BDS2 1440 aa24.3■■□□□ 1.48
CCDC88B-207ENST00000479965 WDR43Q15061 677 aaKnown RBP eCLIP24.3■■□□□ 1.48
CCDC88B-207ENST00000479965 DUSP27Q5VZP5 1158 aa24.28■■□□□ 1.48
CCDC88B-207ENST00000479965 NAP1L5Q96NT1 182 aaPredicted RBP24.27■■□□□ 1.48
CCDC88B-207ENST00000479965 LAMC3Q9Y6N6 1575 aa24.27■■□□□ 1.48
CCDC88B-207ENST00000479965 ANKRD30AQ9BXX3 1397 aa24.26■■□□□ 1.47
CCDC88B-207ENST00000479965 ANKRD50Q9ULJ7 1429 aa24.26■■□□□ 1.47
CCDC88B-207ENST00000479965 GOLGA2Q08379 1002 aa24.26■■□□□ 1.47
CCDC88B-207ENST00000479965 URB2Q14146 1524 aaKnown RBP24.25■■□□□ 1.47
CCDC88B-207ENST00000479965 SEC24BO95487 1268 aa24.25■■□□□ 1.47
CCDC88B-207ENST00000479965 BECN1Q14457 450 aa24.24■■□□□ 1.47
CCDC88B-207ENST00000479965 WDR62O43379 1518 aa24.24■■□□□ 1.47
CCDC88B-207ENST00000479965 GZF1Q9H116 711 aaPredicted RBP24.24■■□□□ 1.47
CCDC88B-207ENST00000479965 BLMP54132 1417 aaPredicted RBP24.23■■□□□ 1.47
CCDC88B-207ENST00000479965 SPRYD3Q8NCJ5 442 aa24.23■■□□□ 1.47
CCDC88B-207ENST00000479965 PLEKHH1Q9ULM0 1364 aa24.23■■□□□ 1.47
CCDC88B-207ENST00000479965 KIAA0586Q9BVV6 1533 aa24.23■■□□□ 1.47
CCDC88B-207ENST00000479965 L1TD1Q5T7N2 865 aaKnown RBP24.22■■□□□ 1.47
CCDC88B-207ENST00000479965 KIF21AQ7Z4S6 1674 aa24.22■■□□□ 1.47
CCDC88B-207ENST00000479965 PKNOX2Q96KN3 472 aa24.22■■□□□ 1.47
CCDC88B-207ENST00000479965 CAMSAP2Q08AD1 1489 aa24.22■■□□□ 1.47
CCDC88B-207ENST00000479965 CCDC146Q8IYE0 955 aa24.21■■□□□ 1.47
CCDC88B-207ENST00000479965 PRG4Q92954 1404 aaPredicted RBP24.21■■□□□ 1.47
CCDC88B-207ENST00000479965 BCAR3O75815 825 aa24.2■■□□□ 1.46
CCDC88B-207ENST00000479965 IGHDP01880 384 aa24.19■■□□□ 1.46
CCDC88B-207ENST00000479965 GLIPR1L2Q4G1C9 344 aa24.19■■□□□ 1.46
CCDC88B-207ENST00000479965 DISP3Q9P2K9 1392 aa24.18■■□□□ 1.46
CCDC88B-207ENST00000479965 IQGAP2Q13576 1575 aa24.18■■□□□ 1.46
CCDC88B-207ENST00000479965 USP19O94966 1318 aa24.17■■□□□ 1.46
CCDC88B-207ENST00000479965 VSIG10Q8N0Z9 540 aa24.17■■□□□ 1.46
CCDC88B-207ENST00000479965 ZMYM4Q5VZL5 1548 aa24.17■■□□□ 1.46
CCDC88B-207ENST00000479965 PNNQ9H307 717 aaKnown RBP24.16■■□□□ 1.46
CCDC88B-207ENST00000479965 CANXP27824 592 aaKnown RBP24.15■■□□□ 1.46
CCDC88B-207ENST00000479965 TSPY4P0CV99 314 aa24.14■■□□□ 1.45
CCDC88B-207ENST00000479965 TSPY10P0CW01 314 aa24.14■■□□□ 1.45
CCDC88B-207ENST00000479965 TMF1P82094 1093 aa24.13■■□□□ 1.45
CCDC88B-207ENST00000479965 PLEKHH2Q8IVE3 1493 aa24.13■■□□□ 1.45
CCDC88B-207ENST00000479965 GOLGA6L3A6NEY3 463 aa24.13■■□□□ 1.45
CCDC88B-207ENST00000479965 PANK2Q9BZ23 570 aa24.13■■□□□ 1.45
CCDC88B-207ENST00000479965 KNSTRNQ9Y448 316 aa24.13■■□□□ 1.45
CCDC88B-207ENST00000479965 E9PCH4 1651 aa24.12■■□□□ 1.45
CCDC88B-207ENST00000479965 SPINK5Q9NQ38 1064 aaPredicted RBP24.12■■□□□ 1.45
CCDC88B-207ENST00000479965 ARHGEF12Q9NZN5 1544 aa24.12■■□□□ 1.45
CCDC88B-207ENST00000479965 XRCC6P12956 609 aaKnown RBP eCLIP24.11■■□□□ 1.45
CCDC88B-207ENST00000479965 PPP2R1AP30153 589 aa24.1■■□□□ 1.45
CCDC88B-207ENST00000479965 SLFN5Q08AF3 891 aa24.1■■□□□ 1.45
CCDC88B-207ENST00000479965 NUP153P49790 1475 aaKnown RBP24.1■■□□□ 1.45
CCDC88B-207ENST00000479965 PDS5BQ9NTI5 1447 aa24.1■■□□□ 1.45
CCDC88B-207ENST00000479965 TESK2Q96S53 571 aa24.1■■□□□ 1.45
CCDC88B-207ENST00000479965 UPF2Q9HAU5 1272 aaKnown RBP24.1■■□□□ 1.45
CCDC88B-207ENST00000479965 COG6Q9Y2V7 657 aa24.1■■□□□ 1.45
CCDC88B-207ENST00000479965 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.09■■□□□ 1.45
CCDC88B-207ENST00000479965 APAF1O14727 1248 aa24.08■■□□□ 1.45
CCDC88B-207ENST00000479965 HSP90AA2PQ14568 343 aaPredicted RBP24.08■■□□□ 1.44
CCDC88B-207ENST00000479965 PANK1Q8TE04 598 aa24.07■■□□□ 1.44
CCDC88B-207ENST00000479965 GPATCH8Q9UKJ3 1502 aaKnown RBP24.06■■□□□ 1.44
CCDC88B-207ENST00000479965 HSP90AA1P07900 732 aaKnown RBP24.06■■□□□ 1.44
CCDC88B-207ENST00000479965 ZNF608Q9ULD9 1512 aaPredicted RBP24.05■■□□□ 1.44
CCDC88B-207ENST00000479965 TROQ12816 1431 aaPredicted RBP24.04■■□□□ 1.44
CCDC88B-207ENST00000479965 HNRNPMP52272 730 aaKnown RBP eCLIP24.04■■□□□ 1.44
CCDC88B-207ENST00000479965 PRAG1Q86YV5 1406 aa24.04■■□□□ 1.44
CCDC88B-207ENST00000479965 TBC1D2Q9BYX2 928 aa24.04■■□□□ 1.44
CCDC88B-207ENST00000479965 ZMYND15Q9H091 742 aa24.04■■□□□ 1.44
CCDC88B-207ENST00000479965 ZNF521Q96K83 1311 aa24.04■■□□□ 1.44
CCDC88B-207ENST00000479965 INSRP06213 1382 aa24.04■■□□□ 1.44
CCDC88B-207ENST00000479965 CCDC144AA2RUR9 1427 aa24.03■■□□□ 1.44
CCDC88B-207ENST00000479965 ERBINQ96RT1 1412 aa24.03■■□□□ 1.44
CCDC88B-207ENST00000479965 MAPK8IP3Q9UPT6 1336 aa24.03■■□□□ 1.44
CCDC88B-207ENST00000479965 ANTXR1Q9H6X2 564 aa24.03■■□□□ 1.44
CCDC88B-207ENST00000479965 ADGRL2O95490 1459 aa24.02■■□□□ 1.44
CCDC88B-207ENST00000479965 CLUAP1Q96AJ1 413 aa24.02■■□□□ 1.44
CCDC88B-207ENST00000479965 COL17A1Q9UMD9 1497 aaPredicted RBP24.02■■□□□ 1.44
CCDC88B-207ENST00000479965 EIF3AQ14152 1382 aaKnown RBP24.01■■□□□ 1.43
CCDC88B-207ENST00000479965 C9orf84Q5VXU9 1444 aa24.01■■□□□ 1.43
CCDC88B-207ENST00000479965 ADGBQ8N7X0 1667 aa23.99■■□□□ 1.43
CCDC88B-207ENST00000479965 DMRT2Q9Y5R5 561 aa23.98■■□□□ 1.43
CCDC88B-207ENST00000479965 MCM4P33991 863 aa23.98■■□□□ 1.43
CCDC88B-207ENST00000479965 CGNL1Q0VF96 1302 aa23.98■■□□□ 1.43
CCDC88B-207ENST00000479965 CLCN1P35523 988 aa23.97■■□□□ 1.43
CCDC88B-207ENST00000479965 NEUROD2Q15784 382 aa23.96■■□□□ 1.43
CCDC88B-207ENST00000479965 NKTRP30414 1462 aaKnown RBP23.95■■□□□ 1.42
CCDC88B-207ENST00000479965 E9PSI1 815 aa23.94■■□□□ 1.42
CCDC88B-207ENST00000479965 CENPJQ9HC77 1338 aaPredicted RBP23.94■■□□□ 1.42
CCDC88B-207ENST00000479965 TRAK2O60296 914 aa23.94■■□□□ 1.42
CCDC88B-207ENST00000479965 TBC1D32Q96NH3 1257 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms