RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 PRDM2Q13029 1718 aa27.27■■□□□ 1.96
SDF4-206ENST00000478938 ROCK2O75116 1388 aaKnown RBP27.25■■□□□ 1.95
SDF4-206ENST00000478938 SPRYD3Q8NCJ5 442 aa27.25■■□□□ 1.95
SDF4-206ENST00000478938 TRIM44Q96DX7 344 aaPredicted RBP27.24■■□□□ 1.95
SDF4-206ENST00000478938 TRAK2O60296 914 aa27.23■■□□□ 1.95
SDF4-206ENST00000478938 VIRMAQ69YN4 1812 aaKnown RBP27.23■■□□□ 1.95
SDF4-206ENST00000478938 NESP48681 1621 aa27.22■■□□□ 1.95
SDF4-206ENST00000478938 PDE4CQ08493 712 aa27.22■■□□□ 1.95
SDF4-206ENST00000478938 NLRP13Q86W25 1043 aa27.21■■□□□ 1.95
SDF4-206ENST00000478938 NLRP1Q9C000 1473 aa27.2■■□□□ 1.94
SDF4-206ENST00000478938 TBC1D2Q9BYX2 928 aa27.19■■□□□ 1.94
SDF4-206ENST00000478938 RIPK4P57078 832 aa27.19■■□□□ 1.94
SDF4-206ENST00000478938 KDM5CP41229 1560 aa27.18■■□□□ 1.94
SDF4-206ENST00000478938 THOC2Q8NI27 1593 aaKnown RBP27.16■■□□□ 1.94
SDF4-206ENST00000478938 SNAPC4Q5SXM2 1469 aa27.15■■□□□ 1.94
SDF4-206ENST00000478938 FAM13BQ9NYF5 915 aa27.13■■□□□ 1.93
SDF4-206ENST00000478938 ARID3AQ99856 593 aa27.12■■□□□ 1.93
SDF4-206ENST00000478938 ZHX1Q9UKY1 873 aaPredicted RBP27.12■■□□□ 1.93
SDF4-206ENST00000478938 EFCAB5A4FU69 1503 aa27.12■■□□□ 1.93
SDF4-206ENST00000478938 SUPT6HQ7KZ85 1726 aaKnown RBP27.12■■□□□ 1.93
SDF4-206ENST00000478938 PDS5BQ9NTI5 1447 aa27.11■■□□□ 1.93
SDF4-206ENST00000478938 SLC4A1APQ9BWU0 796 aaKnown RBP27.1■■□□□ 1.93
SDF4-206ENST00000478938 MBD5Q9P267 1494 aa27.1■■□□□ 1.93
SDF4-206ENST00000478938 BLMP54132 1417 aaPredicted RBP27.1■■□□□ 1.93
SDF4-206ENST00000478938 LRRIQ1Q96JM4 1722 aa27.1■■□□□ 1.93
SDF4-206ENST00000478938 IGHDP01880 384 aa27.08■■□□□ 1.93
SDF4-206ENST00000478938 PARD3Q8TEW0 1356 aa27.08■■□□□ 1.93
SDF4-206ENST00000478938 GAS2L3Q86XJ1 694 aa27.06■■□□□ 1.92
SDF4-206ENST00000478938 PRDM10Q9NQV6 1147 aa27.06■■□□□ 1.92
SDF4-206ENST00000478938 ZMYM4Q5VZL5 1548 aa27.06■■□□□ 1.92
SDF4-206ENST00000478938 OFD1O75665 1012 aa27.05■■□□□ 1.92
SDF4-206ENST00000478938 UGGT2Q9NYU1 1516 aa27.04■■□□□ 1.92
SDF4-206ENST00000478938 SMAP1Q8IYB5 467 aaPredicted RBP27.04■■□□□ 1.92
SDF4-206ENST00000478938 KIF14Q15058 1648 aa27.04■■□□□ 1.92
SDF4-206ENST00000478938 TBC1D32Q96NH3 1257 aa27.04■■□□□ 1.92
SDF4-206ENST00000478938 DUSP27Q5VZP5 1158 aa27.04■■□□□ 1.92
SDF4-206ENST00000478938 TCOF1Q13428 1488 aaKnown RBP27.03■■□□□ 1.92
SDF4-206ENST00000478938 FANCD2Q9BXW9 1451 aa27.03■■□□□ 1.92
SDF4-206ENST00000478938 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.03■■□□□ 1.92
SDF4-206ENST00000478938 ST20-MTHFSA0A0A6YYL1 179 aa27.02■■□□□ 1.92
SDF4-206ENST00000478938 MAP7D2Q96T17 732 aa27.02■■□□□ 1.92
SDF4-206ENST00000478938 CARD11Q9BXL7 1154 aa27.02■■□□□ 1.92
SDF4-206ENST00000478938 KIF21AQ7Z4S6 1674 aa27.01■■□□□ 1.91
SDF4-206ENST00000478938 CHMP5Q9NZZ3 219 aa27.01■■□□□ 1.91
SDF4-206ENST00000478938 ISY1Q9ULR0 285 aaKnown RBP27.01■■□□□ 1.91
SDF4-206ENST00000478938 E9PCH4 1651 aa27.01■■□□□ 1.91
SDF4-206ENST00000478938 UPF2Q9HAU5 1272 aaKnown RBP27■■□□□ 1.91
SDF4-206ENST00000478938 EHBP1L1Q8N3D4 1523 aa27■■□□□ 1.91
SDF4-206ENST00000478938 PLEKHH2Q8IVE3 1493 aa26.99■■□□□ 1.91
SDF4-206ENST00000478938 BCL11BQ9C0K0 894 aaPredicted RBP26.98■■□□□ 1.91
SDF4-206ENST00000478938 R3HCC1Q9Y3T6 440 aaKnown RBP26.98■■□□□ 1.91
SDF4-206ENST00000478938 PDZRN4Q6ZMN7 1036 aaPredicted RBP26.98■■□□□ 1.91
SDF4-206ENST00000478938 EIF3AQ14152 1382 aaKnown RBP26.97■■□□□ 1.91
SDF4-206ENST00000478938 MAPK8IP3Q9UPT6 1336 aa26.97■■□□□ 1.91
SDF4-206ENST00000478938 ZSCAN30Q86W11 494 aa26.97■■□□□ 1.91
SDF4-206ENST00000478938 ERCC6Q03468 1493 aa26.96■■□□□ 1.91
SDF4-206ENST00000478938 DDX11L8A8MPP1 907 aa26.96■■□□□ 1.91
SDF4-206ENST00000478938 CC2D1BQ5T0F9 858 aaKnown RBP26.96■■□□□ 1.91
SDF4-206ENST00000478938 PLEKHH1Q9ULM0 1364 aa26.96■■□□□ 1.91
SDF4-206ENST00000478938 ARHGEF11O15085 1522 aa26.95■■□□□ 1.9
SDF4-206ENST00000478938 BBXQ8WY36 941 aaPredicted RBP26.94■■□□□ 1.9
SDF4-206ENST00000478938 MAGI3Q5TCQ9 1506 aa26.94■■□□□ 1.9
SDF4-206ENST00000478938 TERF1P54274 439 aa26.92■■□□□ 1.9
SDF4-206ENST00000478938 MSNP26038 577 aaKnown RBP26.91■■□□□ 1.9
SDF4-206ENST00000478938 ADAMTS8Q9UP79 889 aa26.9■■□□□ 1.9
SDF4-206ENST00000478938 INSRP06213 1382 aa26.9■■□□□ 1.9
SDF4-206ENST00000478938 GRIN2BQ13224 1484 aa26.9■■□□□ 1.9
SDF4-206ENST00000478938 RALGAPBQ86X10 1494 aa26.89■■□□□ 1.9
SDF4-206ENST00000478938 UQCRHLA0A096LP55 91 aa26.89■■□□□ 1.9
SDF4-206ENST00000478938 UQCRHP07919 91 aa26.89■■□□□ 1.9
SDF4-206ENST00000478938 CCDC173Q0VFZ6 552 aa26.89■■□□□ 1.9
SDF4-206ENST00000478938 BCAR3O75815 825 aa26.88■■□□□ 1.89
SDF4-206ENST00000478938 GTF2E1P29083 439 aaPredicted RBP26.87■■□□□ 1.89
SDF4-206ENST00000478938 ZNF608Q9ULD9 1512 aaPredicted RBP26.87■■□□□ 1.89
SDF4-206ENST00000478938 PPP1R9BQ96SB3 815 aa26.86■■□□□ 1.89
SDF4-206ENST00000478938 PER1O15534 1290 aaPredicted RBP26.86■■□□□ 1.89
SDF4-206ENST00000478938 RAD54L2Q9Y4B4 1467 aa26.85■■□□□ 1.89
SDF4-206ENST00000478938 GOLGA2Q08379 1002 aa26.85■■□□□ 1.89
SDF4-206ENST00000478938 DMTNQ08495 405 aa26.85■■□□□ 1.89
SDF4-206ENST00000478938 ZNF692Q9BU19 519 aaPredicted RBP26.85■■□□□ 1.89
SDF4-206ENST00000478938 PZPP20742 1482 aa26.83■■□□□ 1.89
SDF4-206ENST00000478938 NASPP49321 788 aaPredicted RBP26.83■■□□□ 1.89
SDF4-206ENST00000478938 PDIA4P13667 645 aaKnown RBP26.81■■□□□ 1.88
SDF4-206ENST00000478938 ZNF521Q96K83 1311 aa26.81■■□□□ 1.88
SDF4-206ENST00000478938 UTP14CQ5TAP6 766 aaKnown RBP26.8■■□□□ 1.88
SDF4-206ENST00000478938 MRC2Q9UBG0 1479 aa26.8■■□□□ 1.88
SDF4-206ENST00000478938 XPCQ01831 940 aaPredicted RBP26.8■■□□□ 1.88
SDF4-206ENST00000478938 CTTNBP2Q8WZ74 1663 aa26.79■■□□□ 1.88
SDF4-206ENST00000478938 CLUAP1Q96AJ1 413 aa26.79■■□□□ 1.88
SDF4-206ENST00000478938 STAC3Q96MF2 364 aa26.79■■□□□ 1.88
SDF4-206ENST00000478938 KDM2AQ9Y2K7 1162 aa26.79■■□□□ 1.88
SDF4-206ENST00000478938 TNPO1Q92973 898 aaKnown RBP26.78■■□□□ 1.88
SDF4-206ENST00000478938 UHRF1BP1Q6BDS2 1440 aa26.78■■□□□ 1.88
SDF4-206ENST00000478938 ZSCAN20P17040 1043 aaPredicted RBP26.78■■□□□ 1.88
SDF4-206ENST00000478938 SLFN5Q08AF3 891 aa26.78■■□□□ 1.88
SDF4-206ENST00000478938 MTERF4Q7Z6M4 381 aaKnown RBP26.77■■□□□ 1.88
SDF4-206ENST00000478938 ABCA10Q8WWZ4 1543 aa26.76■■□□□ 1.87
SDF4-206ENST00000478938 RTEL1-TNFRSF6BF6WH68 1400 aa26.76■■□□□ 1.87
SDF4-206ENST00000478938 COG6Q9Y2V7 657 aa26.76■■□□□ 1.87
SDF4-206ENST00000478938 SPINK5Q9NQ38 1064 aaPredicted RBP26.76■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 118.6 ms