RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 ARXQ96QS3 562 aa17.75■□□□□ 0.43
HDAC1-206ENST00000476391 ERBB4Q15303 1308 aa17.75■□□□□ 0.43
HDAC1-206ENST00000476391 KIF14Q15058 1648 aa17.75■□□□□ 0.43
HDAC1-206ENST00000476391 MCM4P33991 863 aa17.74■□□□□ 0.43
HDAC1-206ENST00000476391 C20orf194Q5TEA3 1177 aa17.74■□□□□ 0.43
HDAC1-206ENST00000476391 RGS3P49796 1198 aa17.74■□□□□ 0.43
HDAC1-206ENST00000476391 UGGT2Q9NYU1 1516 aa17.74■□□□□ 0.43
HDAC1-206ENST00000476391 TERF1P54274 439 aa17.73■□□□□ 0.43
HDAC1-206ENST00000476391 TRIM44Q96DX7 344 aaPredicted RBP17.73■□□□□ 0.43
HDAC1-206ENST00000476391 GRPEL1Q9HAV7 217 aa17.73■□□□□ 0.43
HDAC1-206ENST00000476391 E9PCH4 1651 aa17.73■□□□□ 0.43
HDAC1-206ENST00000476391 ARHGEF11O15085 1522 aa17.73■□□□□ 0.43
HDAC1-206ENST00000476391 BLMP54132 1417 aaPredicted RBP17.73■□□□□ 0.43
HDAC1-206ENST00000476391 FOXD1Q16676 465 aa17.73■□□□□ 0.43
HDAC1-206ENST00000476391 KIAA1211Q6ZU35 1233 aa17.7■□□□□ 0.42
HDAC1-206ENST00000476391 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.7■□□□□ 0.42
HDAC1-206ENST00000476391 PARD3Q8TEW0 1356 aa17.7■□□□□ 0.42
HDAC1-206ENST00000476391 LRRIQ1Q96JM4 1722 aa17.7■□□□□ 0.42
HDAC1-206ENST00000476391 NLRP1Q9C000 1473 aa17.7■□□□□ 0.42
HDAC1-206ENST00000476391 TRAK2O60296 914 aa17.69■□□□□ 0.42
HDAC1-206ENST00000476391 CHIC2Q9UKJ5 165 aa17.69■□□□□ 0.42
HDAC1-206ENST00000476391 CFTRP13569 1480 aa17.68■□□□□ 0.42
HDAC1-206ENST00000476391 SMAP1Q8IYB5 467 aaPredicted RBP17.68■□□□□ 0.42
HDAC1-206ENST00000476391 GZF1Q9H116 711 aaPredicted RBP17.68■□□□□ 0.42
HDAC1-206ENST00000476391 MAPK8IP3Q9UPT6 1336 aa17.66■□□□□ 0.42
HDAC1-206ENST00000476391 CTTNBP2Q8WZ74 1663 aa17.65■□□□□ 0.42
HDAC1-206ENST00000476391 EIF3AQ14152 1382 aaKnown RBP17.64■□□□□ 0.42
HDAC1-206ENST00000476391 PDE4CQ08493 712 aa17.64■□□□□ 0.41
HDAC1-206ENST00000476391 OFD1O75665 1012 aa17.63■□□□□ 0.41
HDAC1-206ENST00000476391 TBC1D2Q9BYX2 928 aa17.63■□□□□ 0.41
HDAC1-206ENST00000476391 MTERF4Q7Z6M4 381 aaKnown RBP17.63■□□□□ 0.41
HDAC1-206ENST00000476391 UPF2Q9HAU5 1272 aaKnown RBP17.63■□□□□ 0.41
HDAC1-206ENST00000476391 RALGAPBQ86X10 1494 aa17.62■□□□□ 0.41
HDAC1-206ENST00000476391 DDX11L8A8MPP1 907 aa17.62■□□□□ 0.41
HDAC1-206ENST00000476391 SEC24BO95487 1268 aa17.62■□□□□ 0.41
HDAC1-206ENST00000476391 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.62■□□□□ 0.41
HDAC1-206ENST00000476391 GRIN2BQ13224 1484 aa17.62■□□□□ 0.41
HDAC1-206ENST00000476391 CHMP5Q9NZZ3 219 aa17.62■□□□□ 0.41
HDAC1-206ENST00000476391 ROCK1Q13464 1354 aa17.61■□□□□ 0.41
HDAC1-206ENST00000476391 RIPK4P57078 832 aa17.61■□□□□ 0.41
HDAC1-206ENST00000476391 UHRF1BP1Q6BDS2 1440 aa17.61■□□□□ 0.41
HDAC1-206ENST00000476391 TBC1D32Q96NH3 1257 aa17.6■□□□□ 0.41
HDAC1-206ENST00000476391 ZMYM3Q14202 1370 aa17.6■□□□□ 0.41
HDAC1-206ENST00000476391 CCDC144AA2RUR9 1427 aa17.59■□□□□ 0.41
HDAC1-206ENST00000476391 PRDM2Q13029 1718 aa17.59■□□□□ 0.41
HDAC1-206ENST00000476391 AEBP2Q6ZN18 517 aaPredicted RBP17.59■□□□□ 0.41
HDAC1-206ENST00000476391 SLC4A1APQ9BWU0 796 aaKnown RBP17.59■□□□□ 0.41
HDAC1-206ENST00000476391 ZSCAN30Q86W11 494 aa17.58■□□□□ 0.41
HDAC1-206ENST00000476391 DUSP27Q5VZP5 1158 aa17.58■□□□□ 0.4
HDAC1-206ENST00000476391 CCDC173Q0VFZ6 552 aa17.57■□□□□ 0.4
HDAC1-206ENST00000476391 GAPVD1Q14C86 1478 aa17.57■□□□□ 0.4
HDAC1-206ENST00000476391 UTP14CQ5TAP6 766 aaKnown RBP17.56■□□□□ 0.4
HDAC1-206ENST00000476391 NCLP19338 710 aaKnown RBP17.56■□□□□ 0.4
HDAC1-206ENST00000476391 PPP1R9BQ96SB3 815 aa17.55■□□□□ 0.4
HDAC1-206ENST00000476391 SAMD9Q5K651 1589 aa17.55■□□□□ 0.4
HDAC1-206ENST00000476391 ZNF608Q9ULD9 1512 aaPredicted RBP17.54■□□□□ 0.4
HDAC1-206ENST00000476391 CARD11Q9BXL7 1154 aa17.53■□□□□ 0.4
HDAC1-206ENST00000476391 FAM13BQ9NYF5 915 aa17.53■□□□□ 0.4
HDAC1-206ENST00000476391 MAGI3Q5TCQ9 1506 aa17.53■□□□□ 0.4
HDAC1-206ENST00000476391 MSNP26038 577 aaKnown RBP17.52■□□□□ 0.4
HDAC1-206ENST00000476391 ZNF326Q5BKZ1 582 aaKnown RBP17.52■□□□□ 0.4
HDAC1-206ENST00000476391 IGHDP01880 384 aa17.51■□□□□ 0.39
HDAC1-206ENST00000476391 CUL7Q14999 1698 aa17.51■□□□□ 0.39
HDAC1-206ENST00000476391 ST20-MTHFSA0A0A6YYL1 179 aa17.5■□□□□ 0.39
HDAC1-206ENST00000476391 PER1O15534 1290 aaPredicted RBP17.5■□□□□ 0.39
HDAC1-206ENST00000476391 PTMSP20962 102 aa17.5■□□□□ 0.39
HDAC1-206ENST00000476391 SKOR2Q2VWA4 1001 aaPredicted RBP17.5■□□□□ 0.39
HDAC1-206ENST00000476391 PZPP20742 1482 aa17.5■□□□□ 0.39
HDAC1-206ENST00000476391 KIF21AQ7Z4S6 1674 aa17.5■□□□□ 0.39
HDAC1-206ENST00000476391 SCAPERQ9BY12 1400 aa17.5■□□□□ 0.39
HDAC1-206ENST00000476391 ZNF521Q96K83 1311 aa17.5■□□□□ 0.39
HDAC1-206ENST00000476391 GOLGA2Q08379 1002 aa17.49■□□□□ 0.39
HDAC1-206ENST00000476391 GAS2L3Q86XJ1 694 aa17.49■□□□□ 0.39
HDAC1-206ENST00000476391 ARHGEF12Q9NZN5 1544 aa17.49■□□□□ 0.39
HDAC1-206ENST00000476391 KIAA1107Q9UPP5 1409 aa17.49■□□□□ 0.39
HDAC1-206ENST00000476391 DMTNQ08495 405 aa17.49■□□□□ 0.39
HDAC1-206ENST00000476391 CGNL1Q0VF96 1302 aa17.49■□□□□ 0.39
HDAC1-206ENST00000476391 CLASP1Q7Z460 1538 aa17.48■□□□□ 0.39
HDAC1-206ENST00000476391 HS1BP3Q53T59 392 aa17.48■□□□□ 0.39
HDAC1-206ENST00000476391 ANP32BQ92688 251 aaKnown RBP17.48■□□□□ 0.39
HDAC1-206ENST00000476391 DAPK1P53355 1430 aa17.48■□□□□ 0.39
HDAC1-206ENST00000476391 DYNC1I1O14576 645 aa17.48■□□□□ 0.39
HDAC1-206ENST00000476391 PLEKHH1Q9ULM0 1364 aa17.47■□□□□ 0.39
HDAC1-206ENST00000476391 DNMT1P26358 1616 aaKnown RBP17.46■□□□□ 0.39
HDAC1-206ENST00000476391 NINLQ9Y2I6 1382 aa17.46■□□□□ 0.39
HDAC1-206ENST00000476391 DNAJC5BQ9UF47 199 aa17.46■□□□□ 0.38
HDAC1-206ENST00000476391 SPRYD3Q8NCJ5 442 aa17.45■□□□□ 0.38
HDAC1-206ENST00000476391 ZNF692Q9BU19 519 aaPredicted RBP17.45■□□□□ 0.38
HDAC1-206ENST00000476391 R3HCC1Q9Y3T6 440 aaKnown RBP17.45■□□□□ 0.38
HDAC1-206ENST00000476391 ZNF500O60304 480 aaPredicted RBP17.45■□□□□ 0.38
HDAC1-206ENST00000476391 ZHX1Q9UKY1 873 aaPredicted RBP17.45■□□□□ 0.38
HDAC1-206ENST00000476391 UQCRHLA0A096LP55 91 aa17.44■□□□□ 0.38
HDAC1-206ENST00000476391 UQCRHP07919 91 aa17.44■□□□□ 0.38
HDAC1-206ENST00000476391 PDE3AQ14432 1141 aa17.44■□□□□ 0.38
HDAC1-206ENST00000476391 NCOA3Q9Y6Q9 1424 aa17.44■□□□□ 0.38
HDAC1-206ENST00000476391 NASPP49321 788 aaPredicted RBP17.43■□□□□ 0.38
HDAC1-206ENST00000476391 SLFN5Q08AF3 891 aa17.43■□□□□ 0.38
HDAC1-206ENST00000476391 TRMT2AQ8IZ69 625 aaKnown RBP17.43■□□□□ 0.38
HDAC1-206ENST00000476391 CLUAP1Q96AJ1 413 aa17.43■□□□□ 0.38
HDAC1-206ENST00000476391 EPRSP07814 1512 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms