RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 RNF17Q9BXT8 1623 aaKnown RBP32.77■■■□□ 2.84
LIME1-204ENST00000476183 PPARGC1BQ86YN6 1023 aaKnown RBP32.77■■■□□ 2.84
LIME1-204ENST00000476183 KIF15Q9NS87 1388 aa32.77■■■□□ 2.84
LIME1-204ENST00000476183 EIF2AK4Q9P2K8 1649 aaKnown RBP32.77■■■□□ 2.84
LIME1-204ENST00000476183 KDM5DQ9BY66 1539 aa32.76■■■□□ 2.83
LIME1-204ENST00000476183 FAM50AQ14320 339 aaKnown RBP32.75■■■□□ 2.83
LIME1-204ENST00000476183 RRP7BPQ9NSQ0 103 aa32.75■■■□□ 2.83
LIME1-204ENST00000476183 FAM135AQ9P2D6 1515 aa32.75■■■□□ 2.83
LIME1-204ENST00000476183 CHIC2Q9UKJ5 165 aa32.73■■■□□ 2.83
LIME1-204ENST00000476183 WASHC2CQ9Y4E1 1318 aa32.73■■■□□ 2.83
LIME1-204ENST00000476183 MROH1Q8NDA8 1641 aa32.7■■■□□ 2.83
LIME1-204ENST00000476183 ANKRD30AQ9BXX3 1397 aa32.67■■■□□ 2.82
LIME1-204ENST00000476183 ERBINQ96RT1 1412 aa32.67■■■□□ 2.82
LIME1-204ENST00000476183 NCOA1Q15788 1441 aa32.66■■■□□ 2.82
LIME1-204ENST00000476183 ABCC3O15438 1527 aa32.66■■■□□ 2.82
LIME1-204ENST00000476183 MYO3AQ8NEV4 1616 aa32.66■■■□□ 2.82
LIME1-204ENST00000476183 STRCQ7RTU9 1775 aa32.65■■■□□ 2.82
LIME1-204ENST00000476183 PZPP20742 1482 aa32.65■■■□□ 2.82
LIME1-204ENST00000476183 ADGRL2O95490 1459 aa32.64■■■□□ 2.82
LIME1-204ENST00000476183 FBXO31Q5XUX0 539 aaPredicted RBP32.64■■■□□ 2.82
LIME1-204ENST00000476183 ZC3H13Q5T200 1668 aaKnown RBP32.61■■■□□ 2.81
LIME1-204ENST00000476183 ZNF142P52746 1687 aaPredicted RBP32.59■■■□□ 2.81
LIME1-204ENST00000476183 CEP152O94986 1710 aa32.58■■■□□ 2.81
LIME1-204ENST00000476183 CEP170BQ9Y4F5 1589 aaPredicted RBP32.58■■■□□ 2.81
LIME1-204ENST00000476183 PRDM15P57071 1507 aaPredicted RBP32.57■■■□□ 2.8
LIME1-204ENST00000476183 TNRQ92752 1358 aa32.56■■■□□ 2.8
LIME1-204ENST00000476183 DEPDC5O75140 1603 aa32.55■■■□□ 2.8
LIME1-204ENST00000476183 CAMSAP1Q5T5Y3 1602 aa32.54■■■□□ 2.8
LIME1-204ENST00000476183 A2ML1A8K2U0 1454 aa32.51■■■□□ 2.79
LIME1-204ENST00000476183 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.51■■■□□ 2.79
LIME1-204ENST00000476183 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.48■■■□□ 2.79
LIME1-204ENST00000476183 DMRT2Q9Y5R5 561 aa32.47■■■□□ 2.79
LIME1-204ENST00000476183 SPATA31D1Q6ZQQ2 1576 aa32.46■■■□□ 2.79
LIME1-204ENST00000476183 ANKRD50Q9ULJ7 1429 aa32.46■■■□□ 2.79
LIME1-204ENST00000476183 ERVK-7P63135 1459 aa32.45■■■□□ 2.79
LIME1-204ENST00000476183 VWDEQ8N2E2 1590 aa32.45■■■□□ 2.78
LIME1-204ENST00000476183 CFAP65Q6ZU64 1925 aaKnown RBP32.44■■■□□ 2.78
LIME1-204ENST00000476183 PTPRTO14522 1441 aa32.43■■■□□ 2.78
LIME1-204ENST00000476183 ITGAEP38570 1179 aa32.43■■■□□ 2.78
LIME1-204ENST00000476183 ROCK1Q13464 1354 aa32.43■■■□□ 2.78
LIME1-204ENST00000476183 PLA2R1Q13018 1463 aa32.42■■■□□ 2.78
LIME1-204ENST00000476183 NCKAP5LQ9HCH0 1330 aa32.42■■■□□ 2.78
LIME1-204ENST00000476183 KANK1Q14678 1352 aa32.42■■■□□ 2.78
LIME1-204ENST00000476183 ARHGAP31Q2M1Z3 1444 aa32.42■■■□□ 2.78
LIME1-204ENST00000476183 ILDR1Q86SU0 546 aaPredicted RBP32.41■■■□□ 2.78
LIME1-204ENST00000476183 RRBP1Q9P2E9 1410 aaKnown RBP32.41■■■□□ 2.78
LIME1-204ENST00000476183 NLRP1Q9C000 1473 aa32.41■■■□□ 2.78
LIME1-204ENST00000476183 LMTK2Q8IWU2 1503 aa32.39■■■□□ 2.78
LIME1-204ENST00000476183 PKD2Q13563 968 aa32.34■■■□□ 2.77
LIME1-204ENST00000476183 UGGT1Q9NYU2 1555 aa32.33■■■□□ 2.77
LIME1-204ENST00000476183 EFCAB6Q5THR3 1501 aa32.29■■■□□ 2.76
LIME1-204ENST00000476183 UNC13BO14795 1591 aa32.28■■■□□ 2.76
LIME1-204ENST00000476183 THEMISQ8N1K5 641 aaPredicted RBP32.27■■■□□ 2.76
LIME1-204ENST00000476183 CERKQ8TCT0 537 aa32.26■■■□□ 2.75
LIME1-204ENST00000476183 POLR1AO95602 1720 aaPredicted RBP32.24■■■□□ 2.75
LIME1-204ENST00000476183 NEURL4Q96JN8 1562 aa32.24■■■□□ 2.75
LIME1-204ENST00000476183 FBXO41Q8TF61 875 aa32.22■■■□□ 2.75
LIME1-204ENST00000476183 UBR1Q8IWV7 1749 aa32.22■■■□□ 2.75
LIME1-204ENST00000476183 TET3O43151 1660 aa32.21■■■□□ 2.75
LIME1-204ENST00000476183 NOS1P29475 1434 aa32.2■■■□□ 2.75
LIME1-204ENST00000476183 LTBP4Q8N2S1 1624 aa32.2■■■□□ 2.75
LIME1-204ENST00000476183 SYNMO15061 1565 aa32.19■■■□□ 2.74
LIME1-204ENST00000476183 ANKLE2Q86XL3 938 aa32.19■■■□□ 2.74
LIME1-204ENST00000476183 PIK3C2BO00750 1634 aa32.17■■■□□ 2.74
LIME1-204ENST00000476183 RPRD2Q5VT52 1461 aaKnown RBP32.16■■■□□ 2.74
LIME1-204ENST00000476183 IQGAP3Q86VI3 1631 aa32.15■■■□□ 2.74
LIME1-204ENST00000476183 GCC2Q8IWJ2 1684 aa32.15■■■□□ 2.74
LIME1-204ENST00000476183 ZNF335Q9H4Z2 1342 aaPredicted RBP32.15■■■□□ 2.74
LIME1-204ENST00000476183 IDI1Q13907 227 aa32.13■■■□□ 2.73
LIME1-204ENST00000476183 MED14O60244 1454 aa32.12■■■□□ 2.73
LIME1-204ENST00000476183 NUP155O75694 1391 aa32.12■■■□□ 2.73
LIME1-204ENST00000476183 NAIPQ13075 1403 aa32.11■■■□□ 2.73
LIME1-204ENST00000476183 NPHP4O75161 1426 aaPredicted RBP32.09■■■□□ 2.73
LIME1-204ENST00000476183 E9PCH4 1651 aa32.09■■■□□ 2.73
LIME1-204ENST00000476183 ARHGAP23Q9P227 1491 aa32.09■■■□□ 2.73
LIME1-204ENST00000476183 SLIT1O75093 1534 aa32.08■■■□□ 2.73
LIME1-204ENST00000476183 KDM5AP29375 1690 aaKnown RBP32.05■■■□□ 2.72
LIME1-204ENST00000476183 IQGAP1P46940 1657 aa32.05■■■□□ 2.72
LIME1-204ENST00000476183 LTKP29376 864 aa32.04■■■□□ 2.72
LIME1-204ENST00000476183 SLC52A1Q9NWF4 448 aa32.04■■■□□ 2.72
LIME1-204ENST00000476183 STAG3Q9UJ98 1225 aa32.03■■■□□ 2.72
LIME1-204ENST00000476183 SCAF11Q99590 1463 aaKnown RBP32.03■■■□□ 2.72
LIME1-204ENST00000476183 HFM1A2PYH4 1435 aa32.02■■■□□ 2.72
LIME1-204ENST00000476183 TMEM2Q9UHN6 1383 aa32.02■■■□□ 2.72
LIME1-204ENST00000476183 ADGRB3O60242 1522 aa32.01■■■□□ 2.72
LIME1-204ENST00000476183 TXNDC2Q86VQ3 553 aa32■■■□□ 2.71
LIME1-204ENST00000476183 IQSEC2Q5JU85 1478 aa31.96■■■□□ 2.71
LIME1-204ENST00000476183 EID1Q9Y6B2 187 aa31.94■■■□□ 2.7
LIME1-204ENST00000476183 MYO5BQ9ULV0 1848 aa31.93■■■□□ 2.7
LIME1-204ENST00000476183 TMEM131LA2VDJ0 1609 aa31.91■■■□□ 2.7
LIME1-204ENST00000476183 CPS1P31327 1500 aa31.88■■■□□ 2.69
LIME1-204ENST00000476183 STRCP1A6NGW2 1772 aa31.86■■■□□ 2.69
LIME1-204ENST00000476183 SPHKAPQ2M3C7 1700 aa31.85■■■□□ 2.69
LIME1-204ENST00000476183 ZFYVE9O95405 1425 aa31.84■■■□□ 2.69
LIME1-204ENST00000476183 TRIM52Q96A61 297 aa31.84■■■□□ 2.69
LIME1-204ENST00000476183 CHGAP10645 457 aaKnown RBP31.83■■■□□ 2.69
LIME1-204ENST00000476183 RIMS2Q9UQ26 1411 aa31.81■■■□□ 2.68
LIME1-204ENST00000476183 SLC26A8Q96RN1 970 aa31.75■■■□□ 2.67
LIME1-204ENST00000476183 TRPM2O94759 1503 aa31.74■■■□□ 2.67
LIME1-204ENST00000476183 UBAP1LF5GYI3 381 aa31.73■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms