RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 MAST1Q9Y2H9 1570 aa19.44■□□□□ 0.7
MSH5-SAPCD1-205ENST00000476085 MIA2Q96PC5 1412 aa19.44■□□□□ 0.7
MSH5-SAPCD1-205ENST00000476085 TSPY4P0CV99 314 aa19.44■□□□□ 0.7
MSH5-SAPCD1-205ENST00000476085 TSPY10P0CW01 314 aa19.44■□□□□ 0.7
MSH5-SAPCD1-205ENST00000476085 PKD2Q13563 968 aa19.43■□□□□ 0.7
MSH5-SAPCD1-205ENST00000476085 NCKAP5LQ9HCH0 1330 aa19.43■□□□□ 0.7
MSH5-SAPCD1-205ENST00000476085 KDM5DQ9BY66 1539 aa19.42■□□□□ 0.7
MSH5-SAPCD1-205ENST00000476085 MYOM3Q5VTT5 1437 aa19.42■□□□□ 0.7
MSH5-SAPCD1-205ENST00000476085 A2ML1A8K2U0 1454 aa19.41■□□□□ 0.7
MSH5-SAPCD1-205ENST00000476085 PZPP20742 1482 aa19.41■□□□□ 0.7
MSH5-SAPCD1-205ENST00000476085 FBXO31Q5XUX0 539 aaPredicted RBP19.41■□□□□ 0.7
MSH5-SAPCD1-205ENST00000476085 DNMT1P26358 1616 aaKnown RBP19.4■□□□□ 0.7
MSH5-SAPCD1-205ENST00000476085 IQSEC2Q5JU85 1478 aa19.4■□□□□ 0.7
MSH5-SAPCD1-205ENST00000476085 RNF17Q9BXT8 1623 aaKnown RBP19.38■□□□□ 0.69
MSH5-SAPCD1-205ENST00000476085 WASHC2CQ9Y4E1 1318 aa19.38■□□□□ 0.69
MSH5-SAPCD1-205ENST00000476085 TNRQ92752 1358 aa19.37■□□□□ 0.69
MSH5-SAPCD1-205ENST00000476085 EIF2AK4Q9P2K8 1649 aaKnown RBP19.35■□□□□ 0.69
MSH5-SAPCD1-205ENST00000476085 MROH1Q8NDA8 1641 aa19.34■□□□□ 0.69
MSH5-SAPCD1-205ENST00000476085 ZNF335Q9H4Z2 1342 aaPredicted RBP19.33■□□□□ 0.69
MSH5-SAPCD1-205ENST00000476085 ABCC3O15438 1527 aa19.32■□□□□ 0.68
MSH5-SAPCD1-205ENST00000476085 ABCC5O15440 1437 aa19.31■□□□□ 0.68
MSH5-SAPCD1-205ENST00000476085 ZC3H13Q5T200 1668 aaKnown RBP19.3■□□□□ 0.68
MSH5-SAPCD1-205ENST00000476085 NLRP1Q9C000 1473 aa19.3■□□□□ 0.68
MSH5-SAPCD1-205ENST00000476085 NEURL4Q96JN8 1562 aa19.3■□□□□ 0.68
MSH5-SAPCD1-205ENST00000476085 DUOX2Q9NRD8 1548 aa19.3■□□□□ 0.68
MSH5-SAPCD1-205ENST00000476085 SPATA31D1Q6ZQQ2 1576 aa19.29■□□□□ 0.68
MSH5-SAPCD1-205ENST00000476085 PTPN23Q9H3S7 1636 aa19.29■□□□□ 0.68
MSH5-SAPCD1-205ENST00000476085 SHANK2Q9UPX8 1470 aa19.28■□□□□ 0.68
MSH5-SAPCD1-205ENST00000476085 POLR1AO95602 1720 aaPredicted RBP19.28■□□□□ 0.68
MSH5-SAPCD1-205ENST00000476085 CROCC2H7BZ55 1655 aa19.27■□□□□ 0.68
MSH5-SAPCD1-205ENST00000476085 THEMISQ8N1K5 641 aaPredicted RBP19.27■□□□□ 0.68
MSH5-SAPCD1-205ENST00000476085 FGD6Q6ZV73 1430 aa19.25■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 UGGT1Q9NYU2 1555 aa19.25■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 MED14O60244 1454 aa19.25■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.25■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 CFAP65Q6ZU64 1925 aaKnown RBP19.25■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 ERVK-7P63135 1459 aa19.24■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 KIF15Q9NS87 1388 aa19.24■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 APLP2Q06481 763 aa19.24■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 ANKLE2Q86XL3 938 aa19.24■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 DEPDC5O75140 1603 aa19.24■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 DAPK1P53355 1430 aa19.24■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 CEP152O94986 1710 aa19.23■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 ERBINQ96RT1 1412 aa19.23■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 PRDM15P57071 1507 aaPredicted RBP19.22■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 ARHGAP31Q2M1Z3 1444 aa19.22■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 RRP7BPQ9NSQ0 103 aa19.21■□□□□ 0.67
MSH5-SAPCD1-205ENST00000476085 VWDEQ8N2E2 1590 aa19.19■□□□□ 0.66
MSH5-SAPCD1-205ENST00000476085 NPHP4O75161 1426 aaPredicted RBP19.17■□□□□ 0.66
MSH5-SAPCD1-205ENST00000476085 CPS1P31327 1500 aa19.17■□□□□ 0.66
MSH5-SAPCD1-205ENST00000476085 UBR1Q8IWV7 1749 aa19.17■□□□□ 0.66
MSH5-SAPCD1-205ENST00000476085 UBAP1LF5GYI3 381 aa19.16■□□□□ 0.66
MSH5-SAPCD1-205ENST00000476085 ANKRD30AQ9BXX3 1397 aa19.14■□□□□ 0.65
MSH5-SAPCD1-205ENST00000476085 LMTK2Q8IWU2 1503 aa19.14■□□□□ 0.65
MSH5-SAPCD1-205ENST00000476085 IQGAP1P46940 1657 aa19.14■□□□□ 0.65
MSH5-SAPCD1-205ENST00000476085 ADGRL2O95490 1459 aa19.13■□□□□ 0.65
MSH5-SAPCD1-205ENST00000476085 ARHGAP23Q9P227 1491 aa19.13■□□□□ 0.65
MSH5-SAPCD1-205ENST00000476085 CHIC2Q9UKJ5 165 aa19.12■□□□□ 0.65
MSH5-SAPCD1-205ENST00000476085 STRCP1A6NGW2 1772 aa19.11■□□□□ 0.65
MSH5-SAPCD1-205ENST00000476085 SLIT1O75093 1534 aa19.11■□□□□ 0.65
MSH5-SAPCD1-205ENST00000476085 LTKP29376 864 aa19.1■□□□□ 0.65
MSH5-SAPCD1-205ENST00000476085 DISP3Q9P2K9 1392 aa19.09■□□□□ 0.65
MSH5-SAPCD1-205ENST00000476085 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.09■□□□□ 0.651e-6■□□□□ 10.4
MSH5-SAPCD1-205ENST00000476085 ALKQ9UM73 1620 aa19.08■□□□□ 0.65
MSH5-SAPCD1-205ENST00000476085 ILDR2Q71H61 639 aa19.08■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 KANK1Q14678 1352 aa19.07■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 SCAF11Q99590 1463 aaKnown RBP19.07■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 KDM5AP29375 1690 aaKnown RBP19.07■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 PIK3C2BO00750 1634 aa19.06■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 NOS1P29475 1434 aa19.06■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 TOM1O60784 492 aa19.05■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 IDI1Q13907 227 aa19.05■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 TXNDC2Q86VQ3 553 aa19.04■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 LRRC7Q96NW7 1537 aa19.04■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 TMEM2Q9UHN6 1383 aa19.04■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 SYNMO15061 1565 aa19.03■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 EFCAB6Q5THR3 1501 aa19.03■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 ANKRD50Q9ULJ7 1429 aa19.02■□□□□ 0.64
MSH5-SAPCD1-205ENST00000476085 FAM50AQ14320 339 aaKnown RBP19.01■□□□□ 0.63
MSH5-SAPCD1-205ENST00000476085 HSPA1LP34931 641 aa18.99■□□□□ 0.63
MSH5-SAPCD1-205ENST00000476085 RPRD2Q5VT52 1461 aaKnown RBP18.98■□□□□ 0.63
MSH5-SAPCD1-205ENST00000476085 SLC52A1Q9NWF4 448 aa18.98■□□□□ 0.63
MSH5-SAPCD1-205ENST00000476085 EID1Q9Y6B2 187 aa18.98■□□□□ 0.63
MSH5-SAPCD1-205ENST00000476085 TET3O43151 1660 aa18.98■□□□□ 0.63
MSH5-SAPCD1-205ENST00000476085 PIP4K2BP78356 416 aa18.97■□□□□ 0.63
MSH5-SAPCD1-205ENST00000476085 XIRP1Q702N8 1843 aaKnown RBP18.97■□□□□ 0.63
MSH5-SAPCD1-205ENST00000476085 ROCK1Q13464 1354 aa18.95■□□□□ 0.62
MSH5-SAPCD1-205ENST00000476085 ADGRB3O60242 1522 aa18.94■□□□□ 0.62
MSH5-SAPCD1-205ENST00000476085 UNC13BO14795 1591 aa18.93■□□□□ 0.62
MSH5-SAPCD1-205ENST00000476085 SOCS7O14512 581 aa18.93■□□□□ 0.62
MSH5-SAPCD1-205ENST00000476085 STAG3Q9UJ98 1225 aa18.93■□□□□ 0.62
MSH5-SAPCD1-205ENST00000476085 GCC2Q8IWJ2 1684 aa18.92■□□□□ 0.62
MSH5-SAPCD1-205ENST00000476085 SCAF1Q9H7N4 1312 aaKnown RBP18.91■□□□□ 0.62
MSH5-SAPCD1-205ENST00000476085 MYO5BQ9ULV0 1848 aa18.9■□□□□ 0.62
MSH5-SAPCD1-205ENST00000476085 ZFYVE9O95405 1425 aa18.9■□□□□ 0.62
MSH5-SAPCD1-205ENST00000476085 KCNA6P17658 529 aa18.89■□□□□ 0.61
MSH5-SAPCD1-205ENST00000476085 TMEM131LA2VDJ0 1609 aa18.89■□□□□ 0.61
MSH5-SAPCD1-205ENST00000476085 E9PCH4 1651 aa18.87■□□□□ 0.61
MSH5-SAPCD1-205ENST00000476085 IQGAP3Q86VI3 1631 aa18.86■□□□□ 0.61
MSH5-SAPCD1-205ENST00000476085 SLC26A8Q96RN1 970 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms