RNA–Protein interactions for RNA: ENST00000475558.5

SHQ1-207, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 5

Gene SHQ1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-207ENST00000475558 CCDC18Q5T9S5 1454 aa10.67□□□□□ -0.7
SHQ1-207ENST00000475558 ZMYM3Q14202 1370 aa10.66□□□□□ -0.7
SHQ1-207ENST00000475558 LRRIQ1Q96JM4 1722 aa10.66□□□□□ -0.7
SHQ1-207ENST00000475558 ITSN2Q9NZM3 1697 aa10.66□□□□□ -0.7
SHQ1-207ENST00000475558 ZNF777Q9ULD5 760 aaPredicted RBP10.65□□□□□ -0.7
SHQ1-207ENST00000475558 MROH2AA6NES4 1674 aa10.65□□□□□ -0.7
SHQ1-207ENST00000475558 CAMSAP1Q5T5Y3 1602 aa10.65□□□□□ -0.7
SHQ1-207ENST00000475558 SPAG9O60271 1321 aaKnown RBP10.64□□□□□ -0.71
SHQ1-207ENST00000475558 NCKAP5LQ9HCH0 1330 aa10.64□□□□□ -0.71
SHQ1-207ENST00000475558 PKD2Q13563 968 aa10.64□□□□□ -0.71
SHQ1-207ENST00000475558 UBAP1LF5GYI3 381 aa10.63□□□□□ -0.71
SHQ1-207ENST00000475558 SAMD9LQ8IVG5 1584 aa10.63□□□□□ -0.71
SHQ1-207ENST00000475558 CDC42BPAQ5VT25 1732 aa10.62□□□□□ -0.71
SHQ1-207ENST00000475558 HNRNPMP52272 730 aaKnown RBP eCLIP10.62□□□□□ -0.71
SHQ1-207ENST00000475558 KANK4Q5T7N3 995 aaPredicted RBP10.62□□□□□ -0.71
SHQ1-207ENST00000475558 SP7Q8TDD2 431 aaPredicted RBP10.62□□□□□ -0.71
SHQ1-207ENST00000475558 MTUS2Q5JR59 1369 aa10.62□□□□□ -0.71
SHQ1-207ENST00000475558 ZNF335Q9H4Z2 1342 aaPredicted RBP10.61□□□□□ -0.71
SHQ1-207ENST00000475558 PLA2R1Q13018 1463 aa10.61□□□□□ -0.71
SHQ1-207ENST00000475558 GGT6Q6P531 493 aa10.6□□□□□ -0.71
SHQ1-207ENST00000475558 PIP4P2Q8N4L2 257 aa10.6□□□□□ -0.71
SHQ1-207ENST00000475558 SUPT6HQ7KZ85 1726 aaKnown RBP10.6□□□□□ -0.71
SHQ1-207ENST00000475558 PLEKHH2Q8IVE3 1493 aa10.6□□□□□ -0.71
SHQ1-207ENST00000475558 KIAA1107Q9UPP5 1409 aa10.59□□□□□ -0.71
SHQ1-207ENST00000475558 GPATCH8Q9UKJ3 1502 aaKnown RBP10.59□□□□□ -0.71
SHQ1-207ENST00000475558 PPARGC1BQ86YN6 1023 aaKnown RBP10.59□□□□□ -0.71
SHQ1-207ENST00000475558 PCGF6Q9BYE7 350 aa10.59□□□□□ -0.71
SHQ1-207ENST00000475558 CFDP1Q9UEE9 299 aaPredicted RBP10.59□□□□□ -0.71
SHQ1-207ENST00000475558 A2MP01023 1474 aa10.59□□□□□ -0.71
SHQ1-207ENST00000475558 LRRC9Q6ZRR7 1453 aa10.59□□□□□ -0.71
SHQ1-207ENST00000475558 PTPRKQ15262 1439 aa10.58□□□□□ -0.72
SHQ1-207ENST00000475558 SYCP2Q9BX26 1530 aa10.58□□□□□ -0.72
SHQ1-207ENST00000475558 CLTCQ00610 1675 aaKnown RBP10.58□□□□□ -0.72
SHQ1-207ENST00000475558 TCOF1Q13428 1488 aaKnown RBP10.58□□□□□ -0.72
SHQ1-207ENST00000475558 ATP7AQ04656 1500 aa10.58□□□□□ -0.72
SHQ1-207ENST00000475558 ZNF142P52746 1687 aaPredicted RBP10.57□□□□□ -0.72
SHQ1-207ENST00000475558 CEP170BQ9Y4F5 1589 aaPredicted RBP10.56□□□□□ -0.72
SHQ1-207ENST00000475558 CCNB3Q8WWL7 1395 aa10.56□□□□□ -0.72
SHQ1-207ENST00000475558 MYO3AQ8NEV4 1616 aa10.56□□□□□ -0.72
SHQ1-207ENST00000475558 PITPNM1O00562 1244 aa10.56□□□□□ -0.72
SHQ1-207ENST00000475558 ZBTB22O15209 634 aa10.56□□□□□ -0.72
SHQ1-207ENST00000475558 PLXNC1O60486 1568 aa10.56□□□□□ -0.72
SHQ1-207ENST00000475558 ACIN1Q9UKV3 1341 aaKnown RBP10.56□□□□□ -0.72
SHQ1-207ENST00000475558 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.55□□□□□ -0.72
SHQ1-207ENST00000475558 TOM1O60784 492 aa10.55□□□□□ -0.72
SHQ1-207ENST00000475558 TIAM1Q13009 1591 aa10.55□□□□□ -0.72
SHQ1-207ENST00000475558 INO80Q9ULG1 1556 aaPredicted RBP10.55□□□□□ -0.72
SHQ1-207ENST00000475558 A2ML1A8K2U0 1454 aa10.54□□□□□ -0.72
SHQ1-207ENST00000475558 HAX1O00165 279 aa10.53□□□□□ -0.72
SHQ1-207ENST00000475558 ATXN8OSP0DMR3 200 aa10.53□□□□□ -0.72
SHQ1-207ENST00000475558 RSPH4AQ5TD94 716 aa10.53□□□□□ -0.72
SHQ1-207ENST00000475558 ADGBQ8N7X0 1667 aa10.53□□□□□ -0.72
SHQ1-207ENST00000475558 PIP4K2BP78356 416 aa10.52□□□□□ -0.73
SHQ1-207ENST00000475558 DNMT1P26358 1616 aaKnown RBP10.51□□□□□ -0.73
SHQ1-207ENST00000475558 RTEL1-TNFRSF6BF6WH68 1400 aa10.51□□□□□ -0.73
SHQ1-207ENST00000475558 HSPA1LP34931 641 aa10.51□□□□□ -0.73
SHQ1-207ENST00000475558 CPS1P31327 1500 aa10.51□□□□□ -0.73
SHQ1-207ENST00000475558 DHX29Q7Z478 1369 aaKnown RBP10.51□□□□□ -0.73
SHQ1-207ENST00000475558 ANKLE2Q86XL3 938 aa10.5□□□□□ -0.73
SHQ1-207ENST00000475558 THEMISQ8N1K5 641 aaPredicted RBP10.5□□□□□ -0.73
SHQ1-207ENST00000475558 ZNF644Q9H582 1327 aaPredicted RBP10.5□□□□□ -0.73
SHQ1-207ENST00000475558 TNRQ92752 1358 aa10.5□□□□□ -0.73
SHQ1-207ENST00000475558 MIA2Q96PC5 1412 aa10.5□□□□□ -0.73
SHQ1-207ENST00000475558 RRBP1Q9P2E9 1410 aaKnown RBP10.5□□□□□ -0.73
SHQ1-207ENST00000475558 SHANK2Q9UPX8 1470 aa10.49□□□□□ -0.73
SHQ1-207ENST00000475558 KIF3BO15066 747 aa10.49□□□□□ -0.73
SHQ1-207ENST00000475558 HRCP23327 699 aa10.49□□□□□ -0.73
SHQ1-207ENST00000475558 FXR2P51116 673 aaKnown RBP eCLIP10.49□□□□□ -0.73
SHQ1-207ENST00000475558 FBXO31Q5XUX0 539 aaPredicted RBP10.49□□□□□ -0.73
SHQ1-207ENST00000475558 MBD5Q9P267 1494 aa10.49□□□□□ -0.73
SHQ1-207ENST00000475558 EHBP1L1Q8N3D4 1523 aa10.48□□□□□ -0.73
SHQ1-207ENST00000475558 WASHC2CQ9Y4E1 1318 aa10.48□□□□□ -0.73
SHQ1-207ENST00000475558 POLR1AO95602 1720 aaPredicted RBP10.47□□□□□ -0.73
SHQ1-207ENST00000475558 PZPP20742 1482 aa10.47□□□□□ -0.73
SHQ1-207ENST00000475558 FAM135AQ9P2D6 1515 aa10.47□□□□□ -0.73
SHQ1-207ENST00000475558 MED1Q15648 1581 aaPredicted RBP10.47□□□□□ -0.73
SHQ1-207ENST00000475558 FAM50AQ14320 339 aaKnown RBP10.46□□□□□ -0.73
SHQ1-207ENST00000475558 NCOA2Q15596 1464 aa10.46□□□□□ -0.74
SHQ1-207ENST00000475558 NEURL4Q96JN8 1562 aa10.46□□□□□ -0.74
SHQ1-207ENST00000475558 KDM5DQ9BY66 1539 aa10.45□□□□□ -0.74
SHQ1-207ENST00000475558 NLRP1Q9C000 1473 aa10.45□□□□□ -0.74
SHQ1-207ENST00000475558 MYOM3Q5VTT5 1437 aa10.45□□□□□ -0.74
SHQ1-207ENST00000475558 SPDYE2BA6NHP3 402 aa10.45□□□□□ -0.74
SHQ1-207ENST00000475558 SPDYE6P0CI01 402 aa10.45□□□□□ -0.74
SHQ1-207ENST00000475558 SPDYE2Q495Y8 402 aa10.45□□□□□ -0.74
SHQ1-207ENST00000475558 MED14O60244 1454 aa10.44□□□□□ -0.74
SHQ1-207ENST00000475558 NPHP4O75161 1426 aaPredicted RBP10.44□□□□□ -0.74
SHQ1-207ENST00000475558 CCDC141Q6ZP82 1450 aa10.43□□□□□ -0.74
SHQ1-207ENST00000475558 TSPY4P0CV99 314 aa10.43□□□□□ -0.74
SHQ1-207ENST00000475558 TSPY10P0CW01 314 aa10.43□□□□□ -0.74
SHQ1-207ENST00000475558 DEPDC5O75140 1603 aa10.43□□□□□ -0.74
SHQ1-207ENST00000475558 VWDEQ8N2E2 1590 aa10.43□□□□□ -0.74
SHQ1-207ENST00000475558 UGGT1Q9NYU2 1555 aa10.43□□□□□ -0.74
SHQ1-207ENST00000475558 FGD6Q6ZV73 1430 aa10.42□□□□□ -0.74
SHQ1-207ENST00000475558 ZEB1P37275 1124 aaPredicted RBP10.41□□□□□ -0.74
SHQ1-207ENST00000475558 CAMSAP2Q08AD1 1489 aa10.4□□□□□ -0.74
SHQ1-207ENST00000475558 LRRC7Q96NW7 1537 aa10.38□□□□□ -0.75
SHQ1-207ENST00000475558 IQGAP1P46940 1657 aa10.38□□□□□ -0.75
SHQ1-207ENST00000475558 ALKQ9UM73 1620 aa10.38□□□□□ -0.75
SHQ1-207ENST00000475558 ARHGEF5Q12774 1597 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms