RNA–Protein interactions for RNA: ENST00000474647.1

CCDC78-209, Transcript of coiled-coil domain containing 78, humanhuman

TSL 3

Gene CCDC78, Length 506 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-209ENST00000474647 PPP6R1Q9UPN7 881 aa22.45■■□□□ 1.18
CCDC78-209ENST00000474647 DHX29Q7Z478 1369 aaKnown RBP22.45■■□□□ 1.18
CCDC78-209ENST00000474647 FAM135AQ9P2D6 1515 aa22.43■■□□□ 1.18
CCDC78-209ENST00000474647 ARHGEF5Q12774 1597 aa22.42■■□□□ 1.18
CCDC78-209ENST00000474647 CFAP65Q6ZU64 1925 aaKnown RBP22.42■■□□□ 1.18
CCDC78-209ENST00000474647 NEURL4Q96JN8 1562 aa22.42■■□□□ 1.18
CCDC78-209ENST00000474647 KIF3BO15066 747 aa22.41■■□□□ 1.18
CCDC78-209ENST00000474647 PZPP20742 1482 aa22.41■■□□□ 1.18
CCDC78-209ENST00000474647 UBAP1LF5GYI3 381 aa22.4■■□□□ 1.18
CCDC78-209ENST00000474647 ZC3H13Q5T200 1668 aaKnown RBP22.39■■□□□ 1.17
CCDC78-209ENST00000474647 TNRQ92752 1358 aa22.38■■□□□ 1.17
CCDC78-209ENST00000474647 CEP152O94986 1710 aa22.37■■□□□ 1.17
CCDC78-209ENST00000474647 RNF17Q9BXT8 1623 aaKnown RBP22.37■■□□□ 1.17
CCDC78-209ENST00000474647 FBXO31Q5XUX0 539 aaPredicted RBP22.35■■□□□ 1.17
CCDC78-209ENST00000474647 WASHC2CQ9Y4E1 1318 aa22.34■■□□□ 1.17
CCDC78-209ENST00000474647 EIF2AK4Q9P2K8 1649 aaKnown RBP22.34■■□□□ 1.17
CCDC78-209ENST00000474647 SOCS7O14512 581 aa22.33■■□□□ 1.17
CCDC78-209ENST00000474647 UGGT1Q9NYU2 1555 aa22.33■■□□□ 1.16
CCDC78-209ENST00000474647 MAST1Q9Y2H9 1570 aa22.33■■□□□ 1.16
CCDC78-209ENST00000474647 IQGAP1P46940 1657 aa22.33■■□□□ 1.16
CCDC78-209ENST00000474647 CPS1P31327 1500 aa22.31■■□□□ 1.16
CCDC78-209ENST00000474647 LRRC9Q6ZRR7 1453 aa22.31■■□□□ 1.16
CCDC78-209ENST00000474647 RSPH4AQ5TD94 716 aa22.31■■□□□ 1.16
CCDC78-209ENST00000474647 DEPDC5O75140 1603 aa22.31■■□□□ 1.16
CCDC78-209ENST00000474647 SCAF1Q9H7N4 1312 aaKnown RBP22.3■■□□□ 1.16
CCDC78-209ENST00000474647 NLRP1Q9C000 1473 aa22.29■■□□□ 1.16
CCDC78-209ENST00000474647 TSPY4P0CV99 314 aa22.29■■□□□ 1.16
CCDC78-209ENST00000474647 TSPY10P0CW01 314 aa22.29■■□□□ 1.16
CCDC78-209ENST00000474647 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.28■■□□□ 1.16
CCDC78-209ENST00000474647 ABCC3O15438 1527 aa22.28■■□□□ 1.16
CCDC78-209ENST00000474647 CROCC2H7BZ55 1655 aa22.28■■□□□ 1.16
CCDC78-209ENST00000474647 VPS8Q8N3P4 1428 aa22.28■■□□□ 1.16
CCDC78-209ENST00000474647 SHANK2Q9UPX8 1470 aa22.28■■□□□ 1.16
CCDC78-209ENST00000474647 VWDEQ8N2E2 1590 aa22.27■■□□□ 1.16
CCDC78-209ENST00000474647 STRCP1A6NGW2 1772 aa22.27■■□□□ 1.16
CCDC78-209ENST00000474647 MIA2Q96PC5 1412 aa22.26■■□□□ 1.15
CCDC78-209ENST00000474647 MROH1Q8NDA8 1641 aa22.26■■□□□ 1.15
CCDC78-209ENST00000474647 UBR1Q8IWV7 1749 aa22.25■■□□□ 1.15
CCDC78-209ENST00000474647 PIP4K2BP78356 416 aa22.23■■□□□ 1.15
CCDC78-209ENST00000474647 ANKLE2Q86XL3 938 aa22.23■■□□□ 1.15
CCDC78-209ENST00000474647 NPHP4O75161 1426 aaPredicted RBP22.23■■□□□ 1.15
CCDC78-209ENST00000474647 THEMISQ8N1K5 641 aaPredicted RBP22.22■■□□□ 1.15
CCDC78-209ENST00000474647 MED14O60244 1454 aa22.21■■□□□ 1.15
CCDC78-209ENST00000474647 MED1Q15648 1581 aaPredicted RBP22.21■■□□□ 1.15
CCDC78-209ENST00000474647 ERVK-7P63135 1459 aa22.2■■□□□ 1.14
CCDC78-209ENST00000474647 MYOM3Q5VTT5 1437 aa22.19■■□□□ 1.14
CCDC78-209ENST00000474647 SYNMO15061 1565 aa22.19■■□□□ 1.14
CCDC78-209ENST00000474647 MAP3K1Q13233 1512 aa22.18■■□□□ 1.14
CCDC78-209ENST00000474647 DUOX2Q9NRD8 1548 aa22.18■■□□□ 1.14
CCDC78-209ENST00000474647 TOM1O60784 492 aa22.17■■□□□ 1.14
CCDC78-209ENST00000474647 HSPA1LP34931 641 aa22.16■■□□□ 1.14
CCDC78-209ENST00000474647 KANK4Q5T7N3 995 aaPredicted RBP22.15■■□□□ 1.14
CCDC78-209ENST00000474647 PTPN23Q9H3S7 1636 aa22.15■■□□□ 1.14
CCDC78-209ENST00000474647 ALKQ9UM73 1620 aa22.15■■□□□ 1.14
CCDC78-209ENST00000474647 LOC105371045A0A1W2PR82 267 aa22.14■■□□□ 1.13
CCDC78-209ENST00000474647 PRDM15P57071 1507 aaPredicted RBP22.14■■□□□ 1.13
CCDC78-209ENST00000474647 XIRP1Q702N8 1843 aaKnown RBP22.13■■□□□ 1.13
CCDC78-209ENST00000474647 PIK3C2BO00750 1634 aa22.11■■□□□ 1.13
CCDC78-209ENST00000474647 LRRC7Q96NW7 1537 aa22.09■■□□□ 1.13
CCDC78-209ENST00000474647 KIF15Q9NS87 1388 aa22.08■■□□□ 1.12
CCDC78-209ENST00000474647 SCAF11Q99590 1463 aaKnown RBP22.08■■□□□ 1.12
CCDC78-209ENST00000474647 ERBINQ96RT1 1412 aa22.06■■□□□ 1.12
CCDC78-209ENST00000474647 SENP3Q9H4L4 574 aaPredicted RBP22.06■■□□□ 1.12
CCDC78-209ENST00000474647 SLIT1O75093 1534 aa22.04■■□□□ 1.12
CCDC78-209ENST00000474647 ABCC5O15440 1437 aa22.03■■□□□ 1.12
CCDC78-209ENST00000474647 KDM5AP29375 1690 aaKnown RBP22.02■■□□□ 1.12
CCDC78-209ENST00000474647 RRP7BPQ9NSQ0 103 aa22.02■■□□□ 1.12
CCDC78-209ENST00000474647 DAPK1P53355 1430 aa22.02■■□□□ 1.12
CCDC78-209ENST00000474647 ARHGAP23Q9P227 1491 aa22.02■■□□□ 1.12
CCDC78-209ENST00000474647 ARHGAP31Q2M1Z3 1444 aa22.01■■□□□ 1.11
CCDC78-209ENST00000474647 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.01■■□□□ 1.11
CCDC78-209ENST00000474647 MYO5BQ9ULV0 1848 aa22■■□□□ 1.11
CCDC78-209ENST00000474647 APLP2Q06481 763 aa21.99■■□□□ 1.11
CCDC78-209ENST00000474647 PHF23Q9BUL5 403 aaPredicted RBP21.99■■□□□ 1.11
CCDC78-209ENST00000474647 KANK1Q14678 1352 aa21.98■■□□□ 1.11
CCDC78-209ENST00000474647 TXNDC2Q86VQ3 553 aa21.97■■□□□ 1.11
CCDC78-209ENST00000474647 FGD6Q6ZV73 1430 aa21.97■■□□□ 1.11
CCDC78-209ENST00000474647 EFCAB6Q5THR3 1501 aa21.96■■□□□ 1.11
CCDC78-209ENST00000474647 LTKP29376 864 aa21.96■■□□□ 1.11
CCDC78-209ENST00000474647 STAG3Q9UJ98 1225 aa21.94■■□□□ 1.1
CCDC78-209ENST00000474647 EID1Q9Y6B2 187 aa21.94■■□□□ 1.1
CCDC78-209ENST00000474647 LMTK2Q8IWU2 1503 aa21.92■■□□□ 1.1
CCDC78-209ENST00000474647 CHIC2Q9UKJ5 165 aa21.92■■□□□ 1.1
CCDC78-209ENST00000474647 GCC2Q8IWJ2 1684 aa21.91■■□□□ 1.1
CCDC78-209ENST00000474647 ANKRD30AQ9BXX3 1397 aa21.91■■□□□ 1.1
CCDC78-209ENST00000474647 ADGRB3O60242 1522 aa21.9■■□□□ 1.1
CCDC78-209ENST00000474647 TMEM2Q9UHN6 1383 aa21.9■■□□□ 1.1
CCDC78-209ENST00000474647 ROBO1Q9Y6N7 1651 aa21.88■■□□□ 1.09
CCDC78-209ENST00000474647 TET3O43151 1660 aa21.85■■□□□ 1.09
CCDC78-209ENST00000474647 ADGRL2O95490 1459 aa21.83■■□□□ 1.09
CCDC78-209ENST00000474647 NWD1Q149M9 1564 aa21.83■■□□□ 1.09
CCDC78-209ENST00000474647 CHD2O14647 1828 aaKnown RBP21.83■■□□□ 1.09
CCDC78-209ENST00000474647 IDI1Q13907 227 aa21.83■■□□□ 1.09
CCDC78-209ENST00000474647 NOS1P29475 1434 aa21.81■■□□□ 1.08
CCDC78-209ENST00000474647 TMEM94Q12767 1356 aa21.81■■□□□ 1.08
CCDC78-209ENST00000474647 PHLPP1O60346 1717 aa21.8■■□□□ 1.08
CCDC78-209ENST00000474647 SLC26A8Q96RN1 970 aa21.79■■□□□ 1.08
CCDC78-209ENST00000474647 NKTRP30414 1462 aaKnown RBP21.78■■□□□ 1.08
CCDC78-209ENST00000474647 FAM50AQ14320 339 aaKnown RBP21.78■■□□□ 1.08
CCDC78-209ENST00000474647 UNC13BO14795 1591 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms