RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 NCOA1Q15788 1441 aa23.58■■□□□ 1.36
VARS-223ENST00000474643 CEP170BQ9Y4F5 1589 aaPredicted RBP23.56■■□□□ 1.36
VARS-223ENST00000474643 FAM135AQ9P2D6 1515 aa23.54■■□□□ 1.36
VARS-223ENST00000474643 ZNF142P52746 1687 aaPredicted RBP23.53■■□□□ 1.36
VARS-223ENST00000474643 MAST1Q9Y2H9 1570 aa23.52■■□□□ 1.36
VARS-223ENST00000474643 NCKAP5LQ9HCH0 1330 aa23.51■■□□□ 1.35
VARS-223ENST00000474643 TNRQ92752 1358 aa23.51■■□□□ 1.35
VARS-223ENST00000474643 PZPP20742 1482 aa23.49■■□□□ 1.35
VARS-223ENST00000474643 PKD2Q13563 968 aa23.48■■□□□ 1.35
VARS-223ENST00000474643 FBXO31Q5XUX0 539 aaPredicted RBP23.47■■□□□ 1.35
VARS-223ENST00000474643 A2ML1A8K2U0 1454 aa23.47■■□□□ 1.35
VARS-223ENST00000474643 PLA2R1Q13018 1463 aa23.47■■□□□ 1.35
VARS-223ENST00000474643 PTPN23Q9H3S7 1636 aa23.47■■□□□ 1.35
VARS-223ENST00000474643 EIF2AK4Q9P2K8 1649 aaKnown RBP23.44■■□□□ 1.34
VARS-223ENST00000474643 RNF17Q9BXT8 1623 aaKnown RBP23.44■■□□□ 1.34
VARS-223ENST00000474643 DUOX2Q9NRD8 1548 aa23.43■■□□□ 1.34
VARS-223ENST00000474643 KIF15Q9NS87 1388 aa23.43■■□□□ 1.34
VARS-223ENST00000474643 FGD6Q6ZV73 1430 aa23.42■■□□□ 1.34
VARS-223ENST00000474643 ZC3H13Q5T200 1668 aaKnown RBP23.42■■□□□ 1.34
VARS-223ENST00000474643 RRP7BPQ9NSQ0 103 aa23.42■■□□□ 1.34
VARS-223ENST00000474643 SHANK2Q9UPX8 1470 aa23.42■■□□□ 1.34
VARS-223ENST00000474643 CROCC2H7BZ55 1655 aa23.41■■□□□ 1.34
VARS-223ENST00000474643 DNMT1P26358 1616 aaKnown RBP23.41■■□□□ 1.34
VARS-223ENST00000474643 ABCC3O15438 1527 aa23.39■■□□□ 1.34
VARS-223ENST00000474643 DAPK1P53355 1430 aa23.39■■□□□ 1.33
VARS-223ENST00000474643 TCOF1Q13428 1488 aaKnown RBP23.38■■□□□ 1.33
VARS-223ENST00000474643 NLRP1Q9C000 1473 aa23.38■■□□□ 1.33
VARS-223ENST00000474643 THEMISQ8N1K5 641 aaPredicted RBP23.38■■□□□ 1.33
VARS-223ENST00000474643 ABCC5O15440 1437 aa23.38■■□□□ 1.33
VARS-223ENST00000474643 FAM50AQ14320 339 aaKnown RBP23.37■■□□□ 1.33
VARS-223ENST00000474643 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.37■■□□□ 1.337e-7■■□□□ 12.5
VARS-223ENST00000474643 CHIC2Q9UKJ5 165 aa23.37■■□□□ 1.33
VARS-223ENST00000474643 ERBINQ96RT1 1412 aa23.36■■□□□ 1.33
VARS-223ENST00000474643 ZNF335Q9H4Z2 1342 aaPredicted RBP23.35■■□□□ 1.33
VARS-223ENST00000474643 KANK1Q14678 1352 aa23.35■■□□□ 1.33
VARS-223ENST00000474643 ANKRD30AQ9BXX3 1397 aa23.35■■□□□ 1.33
VARS-223ENST00000474643 UGGT1Q9NYU2 1555 aa23.35■■□□□ 1.33
VARS-223ENST00000474643 LTBP4Q8N2S1 1624 aa23.34■■□□□ 1.33
VARS-223ENST00000474643 ANKLE2Q86XL3 938 aa23.34■■□□□ 1.33
VARS-223ENST00000474643 POLR1AO95602 1720 aaPredicted RBP23.33■■□□□ 1.33
VARS-223ENST00000474643 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.33■■□□□ 1.33
VARS-223ENST00000474643 CEP152O94986 1710 aa23.33■■□□□ 1.32
VARS-223ENST00000474643 IQSEC2Q5JU85 1478 aa23.32■■□□□ 1.32
VARS-223ENST00000474643 ERVK-7P63135 1459 aa23.3■■□□□ 1.32
VARS-223ENST00000474643 MROH1Q8NDA8 1641 aa23.3■■□□□ 1.32
VARS-223ENST00000474643 PRDM15P57071 1507 aaPredicted RBP23.28■■□□□ 1.32
VARS-223ENST00000474643 SPATA31D1Q6ZQQ2 1576 aa23.27■■□□□ 1.32
VARS-223ENST00000474643 UBAP1LF5GYI3 381 aa23.25■■□□□ 1.31
VARS-223ENST00000474643 STAG3Q9UJ98 1225 aa23.24■■□□□ 1.31
VARS-223ENST00000474643 CFAP65Q6ZU64 1925 aaKnown RBP23.23■■□□□ 1.31
VARS-223ENST00000474643 NEURL4Q96JN8 1562 aa23.23■■□□□ 1.31
VARS-223ENST00000474643 NPHP4O75161 1426 aaPredicted RBP23.22■■□□□ 1.31
VARS-223ENST00000474643 DEPDC5O75140 1603 aa23.2■■□□□ 1.3
VARS-223ENST00000474643 SCAF1Q9H7N4 1312 aaKnown RBP23.2■■□□□ 1.3
VARS-223ENST00000474643 ARHGAP31Q2M1Z3 1444 aa23.19■■□□□ 1.3
VARS-223ENST00000474643 CPS1P31327 1500 aa23.18■■□□□ 1.3
VARS-223ENST00000474643 EID1Q9Y6B2 187 aa23.17■■□□□ 1.3
VARS-223ENST00000474643 ADGRL2O95490 1459 aa23.17■■□□□ 1.3
VARS-223ENST00000474643 IQGAP1P46940 1657 aa23.16■■□□□ 1.3
VARS-223ENST00000474643 MED14O60244 1454 aa23.15■■□□□ 1.3
VARS-223ENST00000474643 UBR1Q8IWV7 1749 aa23.14■■□□□ 1.3
VARS-223ENST00000474643 ANKRD50Q9ULJ7 1429 aa23.14■■□□□ 1.29
VARS-223ENST00000474643 PPARGC1BQ86YN6 1023 aaKnown RBP23.13■■□□□ 1.29
VARS-223ENST00000474643 DISP3Q9P2K9 1392 aa23.13■■□□□ 1.29
VARS-223ENST00000474643 SCAF11Q99590 1463 aaKnown RBP23.12■■□□□ 1.29
VARS-223ENST00000474643 TXNDC2Q86VQ3 553 aa23.12■■□□□ 1.29
VARS-223ENST00000474643 TOM1O60784 492 aa23.11■■□□□ 1.29
VARS-223ENST00000474643 ITGAEP38570 1179 aa23.11■■□□□ 1.29
VARS-223ENST00000474643 LMTK2Q8IWU2 1503 aa23.11■■□□□ 1.29
VARS-223ENST00000474643 PIP4K2BP78356 416 aa23.1■■□□□ 1.29
VARS-223ENST00000474643 EFCAB6Q5THR3 1501 aa23.09■■□□□ 1.29
VARS-223ENST00000474643 PIK3C2BO00750 1634 aa23.08■■□□□ 1.29
VARS-223ENST00000474643 VWDEQ8N2E2 1590 aa23.08■■□□□ 1.29
VARS-223ENST00000474643 SLIT1O75093 1534 aa23.05■■□□□ 1.28
VARS-223ENST00000474643 BCANQ96GW7 911 aa23.04■■□□□ 1.28
VARS-223ENST00000474643 LTKP29376 864 aa23.03■■□□□ 1.28
VARS-223ENST00000474643 IDI1Q13907 227 aa23.03■■□□□ 1.28
VARS-223ENST00000474643 TMEM2Q9UHN6 1383 aa23.02■■□□□ 1.28
VARS-223ENST00000474643 SLC52A1Q9NWF4 448 aa23.02■■□□□ 1.28
VARS-223ENST00000474643 RPRD2Q5VT52 1461 aaKnown RBP23.02■■□□□ 1.28
VARS-223ENST00000474643 ARHGAP23Q9P227 1491 aa23.02■■□□□ 1.28
VARS-223ENST00000474643 SYNMO15061 1565 aa23.01■■□□□ 1.27
VARS-223ENST00000474643 ROCK1Q13464 1354 aa23.01■■□□□ 1.27
VARS-223ENST00000474643 ADGRB3O60242 1522 aa22.99■■□□□ 1.27
VARS-223ENST00000474643 TET3O43151 1660 aa22.99■■□□□ 1.27
VARS-223ENST00000474643 KDM5AP29375 1690 aaKnown RBP22.99■■□□□ 1.27
VARS-223ENST00000474643 NOS1P29475 1434 aa22.99■■□□□ 1.27
VARS-223ENST00000474643 PPP1R15AO75807 674 aaPredicted RBP22.97■■□□□ 1.27
VARS-223ENST00000474643 UNC13BO14795 1591 aa22.97■■□□□ 1.27
VARS-223ENST00000474643 CHGAP10645 457 aaKnown RBP22.96■■□□□ 1.27
VARS-223ENST00000474643 GCC2Q8IWJ2 1684 aa22.95■■□□□ 1.26
VARS-223ENST00000474643 LRRC7Q96NW7 1537 aa22.95■■□□□ 1.26
VARS-223ENST00000474643 HDGFP51858 240 aaKnown RBP22.94■■□□□ 1.26
VARS-223ENST00000474643 NUP155O75694 1391 aa22.93■■□□□ 1.26
VARS-223ENST00000474643 SENP3Q9H4L4 574 aaPredicted RBP22.93■■□□□ 1.26
VARS-223ENST00000474643 HSPA1LP34931 641 aa22.92■■□□□ 1.26
VARS-223ENST00000474643 STRCP1A6NGW2 1772 aa22.91■■□□□ 1.26
VARS-223ENST00000474643 SLC26A8Q96RN1 970 aa22.91■■□□□ 1.26
VARS-223ENST00000474643 IQGAP3Q86VI3 1631 aa22.88■■□□□ 1.25
VARS-223ENST00000474643 RIMS2Q9UQ26 1411 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms