RNA–Protein interactions for RNA: ENST00000474546.1

CCDC93-208, Transcript of coiled-coil domain containing 93, humanhuman

TSL 3

Gene CCDC93, Length 452 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC93-208ENST00000474546 LRRC7Q96NW7 1537 aa10.99□□□□□ -0.65
CCDC93-208ENST00000474546 PTPN23Q9H3S7 1636 aa10.99□□□□□ -0.65
CCDC93-208ENST00000474546 SENP3-EIF4A1A0A087X0R7 540 aa10.99□□□□□ -0.65
CCDC93-208ENST00000474546 ZNF772Q68DY9 489 aaPredicted RBP10.99□□□□□ -0.65
CCDC93-208ENST00000474546 EHBP1L1Q8N3D4 1523 aa10.99□□□□□ -0.65
CCDC93-208ENST00000474546 HECW1Q76N89 1606 aa10.98□□□□□ -0.65
CCDC93-208ENST00000474546 RANGAP1P46060 587 aaPredicted RBP10.98□□□□□ -0.65
CCDC93-208ENST00000474546 FAM50AQ14320 339 aaKnown RBP10.98□□□□□ -0.65
CCDC93-208ENST00000474546 C9orf84Q5VXU9 1444 aa10.98□□□□□ -0.65
CCDC93-208ENST00000474546 ATP10AO60312 1499 aa10.98□□□□□ -0.65
CCDC93-208ENST00000474546 NCOA2Q15596 1464 aa10.98□□□□□ -0.65
CCDC93-208ENST00000474546 SLC34A2O95436 690 aa10.97□□□□□ -0.65
CCDC93-208ENST00000474546 GCC2Q8IWJ2 1684 aa10.97□□□□□ -0.65
CCDC93-208ENST00000474546 RNF17Q9BXT8 1623 aaKnown RBP10.96□□□□□ -0.65
CCDC93-208ENST00000474546 RXRBP28702 533 aa10.96□□□□□ -0.65
CCDC93-208ENST00000474546 MYOM3Q5VTT5 1437 aa10.95□□□□□ -0.66
CCDC93-208ENST00000474546 ITGAEP38570 1179 aa10.95□□□□□ -0.66
CCDC93-208ENST00000474546 ESF1Q9H501 851 aaKnown RBP10.95□□□□□ -0.66
CCDC93-208ENST00000474546 POLR1AO95602 1720 aaPredicted RBP10.95□□□□□ -0.66
CCDC93-208ENST00000474546 CFAP74Q9C0B2 1584 aa10.94□□□□□ -0.66
CCDC93-208ENST00000474546 NPATQ14207 1427 aa10.94□□□□□ -0.66
CCDC93-208ENST00000474546 CNTLNQ9NXG0 1405 aa10.94□□□□□ -0.66
CCDC93-208ENST00000474546 ZBED9Q6R2W3 1325 aa10.94□□□□□ -0.66
CCDC93-208ENST00000474546 RAPGEF6Q8TEU7 1601 aa10.94□□□□□ -0.66
CCDC93-208ENST00000474546 MTUS2Q5JR59 1369 aa10.93□□□□□ -0.66
CCDC93-208ENST00000474546 ZNF142P52746 1687 aaPredicted RBP10.93□□□□□ -0.66
CCDC93-208ENST00000474546 BCANQ96GW7 911 aa10.93□□□□□ -0.66
CCDC93-208ENST00000474546 EIF4G2P78344 907 aaKnown RBP eCLIP10.92□□□□□ -0.66
CCDC93-208ENST00000474546 SAMD9Q5K651 1589 aa10.91□□□□□ -0.66
CCDC93-208ENST00000474546 HNRNPUQ00839 825 aaKnown RBP eCLIP10.91□□□□□ -0.66
CCDC93-208ENST00000474546 MIA2Q96PC5 1412 aa10.91□□□□□ -0.66
CCDC93-208ENST00000474546 NAIPQ13075 1403 aa10.9□□□□□ -0.66
CCDC93-208ENST00000474546 ABCA8O94911 1581 aa10.9□□□□□ -0.67
CCDC93-208ENST00000474546 SIN3AQ96ST3 1273 aa10.89□□□□□ -0.67
CCDC93-208ENST00000474546 KTN1Q86UP2 1357 aaKnown RBP10.89□□□□□ -0.67
CCDC93-208ENST00000474546 UGGT2Q9NYU1 1516 aa10.89□□□□□ -0.67
CCDC93-208ENST00000474546 FAM135BQ49AJ0 1406 aa10.88□□□□□ -0.67
CCDC93-208ENST00000474546 VWDEQ8N2E2 1590 aa10.86□□□□□ -0.67
CCDC93-208ENST00000474546 ANP32AP39687 249 aaKnown RBP10.86□□□□□ -0.67
CCDC93-208ENST00000474546 ROCK2O75116 1388 aaKnown RBP10.86□□□□□ -0.67
CCDC93-208ENST00000474546 ROCK1Q13464 1354 aa10.86□□□□□ -0.67
CCDC93-208ENST00000474546 SYNMO15061 1565 aa10.86□□□□□ -0.67
CCDC93-208ENST00000474546 CEP170BQ9Y4F5 1589 aaPredicted RBP10.86□□□□□ -0.67
CCDC93-208ENST00000474546 AGLP35573 1532 aa10.85□□□□□ -0.67
CCDC93-208ENST00000474546 RTL5Q5HYW3 569 aaPredicted RBP10.85□□□□□ -0.67
CCDC93-208ENST00000474546 USP35Q9P2H5 1018 aa10.85□□□□□ -0.67
CCDC93-208ENST00000474546 CEP350Q5VT06 3117 aa10.84□□□□□ -0.67
CCDC93-208ENST00000474546 SMG6Q86US8 1419 aaKnown RBP10.84□□□□□ -0.67
CCDC93-208ENST00000474546 NOP58Q9Y2X3 529 aaKnown RBP10.84□□□□□ -0.67
CCDC93-208ENST00000474546 ATAD2Q6PL18 1390 aa10.84□□□□□ -0.67
CCDC93-208ENST00000474546 MYO3AQ8NEV4 1616 aa10.84□□□□□ -0.67
CCDC93-208ENST00000474546 MROH2AA6NES4 1674 aa10.83□□□□□ -0.68
CCDC93-208ENST00000474546 NUTM2BA6NNL0 878 aaPredicted RBP10.83□□□□□ -0.68
CCDC93-208ENST00000474546 NUTM2EB1AL46 878 aaPredicted RBP10.83□□□□□ -0.68
CCDC93-208ENST00000474546 NUTM2DQ5VT03 806 aaPredicted RBP10.83□□□□□ -0.68
CCDC93-208ENST00000474546 CCDC125Q86Z20 511 aa10.83□□□□□ -0.68
CCDC93-208ENST00000474546 NUTM2AQ8IVF1 878 aaPredicted RBP10.83□□□□□ -0.68
CCDC93-208ENST00000474546 JCADQ9P266 1359 aa10.82□□□□□ -0.68
CCDC93-208ENST00000474546 MEX3CQ5U5Q3 659 aaKnown RBP10.82□□□□□ -0.68
CCDC93-208ENST00000474546 CDK13Q14004 1512 aaKnown RBP10.82□□□□□ -0.68
CCDC93-208ENST00000474546 CCDC7Q96M83 1385 aa10.81□□□□□ -0.68
CCDC93-208ENST00000474546 PRKRIP1Q9H875 184 aaPredicted RBP10.8□□□□□ -0.68
CCDC93-208ENST00000474546 REREQ9P2R6 1566 aa10.8□□□□□ -0.68
CCDC93-208ENST00000474546 RPRD2Q5VT52 1461 aaKnown RBP10.8□□□□□ -0.68
CCDC93-208ENST00000474546 NEURL4Q96JN8 1562 aa10.79□□□□□ -0.68
CCDC93-208ENST00000474546 EP400Q96L91 3159 aa10.79□□□□□ -0.68
CCDC93-208ENST00000474546 MSH5O43196 834 aa10.79□□□□□ -0.68
CCDC93-208ENST00000474546 C1QTNF8P60827 252 aa10.79□□□□□ -0.68
CCDC93-208ENST00000474546 NHSL1Q5SYE7 1610 aa10.79□□□□□ -0.68
CCDC93-208ENST00000474546 ATP10BO94823 1461 aa10.79□□□□□ -0.68
CCDC93-208ENST00000474546 WASHC2AQ641Q2 1341 aa10.79□□□□□ -0.68
CCDC93-208ENST00000474546 HSPA5P11021 654 aaKnown RBP10.78□□□□□ -0.68
CCDC93-208ENST00000474546 SPATA31A6Q5VVP1 1343 aa10.78□□□□□ -0.68
CCDC93-208ENST00000474546 RNF123Q5XPI4 1314 aa10.78□□□□□ -0.68
CCDC93-208ENST00000474546 INSRP06213 1382 aa10.77□□□□□ -0.68
CCDC93-208ENST00000474546 RGS12O14924 1447 aa10.77□□□□□ -0.68
CCDC93-208ENST00000474546 MRS2Q9HD23 443 aa10.77□□□□□ -0.69
CCDC93-208ENST00000474546 DEKP35659 375 aaKnown RBP10.76□□□□□ -0.69
CCDC93-208ENST00000474546 IPO9Q96P70 1041 aaKnown RBP10.76□□□□□ -0.69
CCDC93-208ENST00000474546 STRCP1A6NGW2 1772 aa10.75□□□□□ -0.69
CCDC93-208ENST00000474546 ZBTB47Q9UFB7 747 aaPredicted RBP10.75□□□□□ -0.69
CCDC93-208ENST00000474546 ATP1B4Q9UN42 357 aaPredicted RBP10.75□□□□□ -0.69
CCDC93-208ENST00000474546 NUDCQ9Y266 331 aa10.75□□□□□ -0.69
CCDC93-208ENST00000474546 ROBO1Q9Y6N7 1651 aa10.75□□□□□ -0.69
CCDC93-208ENST00000474546 ZMYM3Q14202 1370 aa10.75□□□□□ -0.69
CCDC93-208ENST00000474546 DNMT1P26358 1616 aaKnown RBP10.74□□□□□ -0.69
CCDC93-208ENST00000474546 PPM1GO15355 546 aaPredicted RBP10.74□□□□□ -0.69
CCDC93-208ENST00000474546 MS4A1P11836 297 aa10.74□□□□□ -0.69
CCDC93-208ENST00000474546 RBM6P78332 1123 aaKnown RBP10.74□□□□□ -0.69
CCDC93-208ENST00000474546 PDE3BQ13370 1112 aa10.74□□□□□ -0.69
CCDC93-208ENST00000474546 SCAPERQ9BY12 1400 aa10.74□□□□□ -0.69
CCDC93-208ENST00000474546 TCERG1O14776 1098 aaKnown RBP10.73□□□□□ -0.69
CCDC93-208ENST00000474546 SPATA31E1Q6ZUB1 1445 aa10.73□□□□□ -0.69
CCDC93-208ENST00000474546 PHLPP1O60346 1717 aa10.72□□□□□ -0.69
CCDC93-208ENST00000474546 ANKLE2Q86XL3 938 aa10.72□□□□□ -0.69
CCDC93-208ENST00000474546 DDRGK1Q96HY6 314 aa10.72□□□□□ -0.69
CCDC93-208ENST00000474546 CCDC136Q96JN2 1154 aa10.72□□□□□ -0.69
CCDC93-208ENST00000474546 A2ML1A8K2U0 1454 aa10.72□□□□□ -0.69
CCDC93-208ENST00000474546 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.72□□□□□ -0.69
CCDC93-208ENST00000474546 KDM5CP41229 1560 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms