RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 ZNF142P52746 1687 aaPredicted RBP31.92■■■□□ 2.7
PDLIM4-206ENST00000474421 KDM5DQ9BY66 1539 aa31.91■■■□□ 2.7
PDLIM4-206ENST00000474421 CAMSAP1Q5T5Y3 1602 aa31.91■■■□□ 2.7
PDLIM4-206ENST00000474421 WASHC2CQ9Y4E1 1318 aa31.89■■■□□ 2.7
PDLIM4-206ENST00000474421 CEP170BQ9Y4F5 1589 aaPredicted RBP31.88■■■□□ 2.69
PDLIM4-206ENST00000474421 PZPP20742 1482 aa31.84■■■□□ 2.69
PDLIM4-206ENST00000474421 PLA2R1Q13018 1463 aa31.83■■■□□ 2.69
PDLIM4-206ENST00000474421 EIF2AK4Q9P2K8 1649 aaKnown RBP31.82■■■□□ 2.69
PDLIM4-206ENST00000474421 RNF17Q9BXT8 1623 aaKnown RBP31.82■■■□□ 2.68
PDLIM4-206ENST00000474421 PTPN23Q9H3S7 1636 aa31.81■■■□□ 2.68
PDLIM4-206ENST00000474421 PKD2Q13563 968 aa31.8■■■□□ 2.68
PDLIM4-206ENST00000474421 A2ML1A8K2U0 1454 aa31.79■■■□□ 2.68
PDLIM4-206ENST00000474421 TNRQ92752 1358 aa31.79■■■□□ 2.68
PDLIM4-206ENST00000474421 SHANK2Q9UPX8 1470 aa31.78■■■□□ 2.68
PDLIM4-206ENST00000474421 DUOX2Q9NRD8 1548 aa31.77■■■□□ 2.68
PDLIM4-206ENST00000474421 ZC3H13Q5T200 1668 aaKnown RBP31.76■■■□□ 2.67
PDLIM4-206ENST00000474421 NCKAP5LQ9HCH0 1330 aa31.75■■■□□ 2.67
PDLIM4-206ENST00000474421 FGD6Q6ZV73 1430 aa31.75■■■□□ 2.67
PDLIM4-206ENST00000474421 FBXO31Q5XUX0 539 aaPredicted RBP31.75■■■□□ 2.67
PDLIM4-206ENST00000474421 CROCC2H7BZ55 1655 aa31.75■■■□□ 2.67
PDLIM4-206ENST00000474421 ABCC5O15440 1437 aa31.74■■■□□ 2.67
PDLIM4-206ENST00000474421 TCOF1Q13428 1488 aaKnown RBP31.73■■■□□ 2.67
PDLIM4-206ENST00000474421 DNMT1P26358 1616 aaKnown RBP31.73■■■□□ 2.67
PDLIM4-206ENST00000474421 ABCC3O15438 1527 aa31.71■■■□□ 2.67
PDLIM4-206ENST00000474421 KIF15Q9NS87 1388 aa31.7■■■□□ 2.67
PDLIM4-206ENST00000474421 LTBP4Q8N2S1 1624 aa31.68■■■□□ 2.66
PDLIM4-206ENST00000474421 DAPK1P53355 1430 aa31.68■■■□□ 2.66
PDLIM4-206ENST00000474421 NLRP1Q9C000 1473 aa31.68■■■□□ 2.66
PDLIM4-206ENST00000474421 ERBINQ96RT1 1412 aa31.66■■■□□ 2.66
PDLIM4-206ENST00000474421 MROH1Q8NDA8 1641 aa31.66■■■□□ 2.66
PDLIM4-206ENST00000474421 RRP7BPQ9NSQ0 103 aa31.64■■■□□ 2.66
PDLIM4-206ENST00000474421 IQSEC2Q5JU85 1478 aa31.64■■■□□ 2.66
PDLIM4-206ENST00000474421 THEMISQ8N1K5 641 aaPredicted RBP31.61■■■□□ 2.65
PDLIM4-206ENST00000474421 ANKRD30AQ9BXX3 1397 aa31.6■■■□□ 2.65
PDLIM4-206ENST00000474421 CEP152O94986 1710 aa31.6■■■□□ 2.65
PDLIM4-206ENST00000474421 POLR1AO95602 1720 aaPredicted RBP31.6■■■□□ 2.65
PDLIM4-206ENST00000474421 SPATA31D1Q6ZQQ2 1576 aa31.6■■■□□ 2.65
PDLIM4-206ENST00000474421 PRDM15P57071 1507 aaPredicted RBP31.59■■■□□ 2.65
PDLIM4-206ENST00000474421 UGGT1Q9NYU2 1555 aa31.58■■■□□ 2.65
PDLIM4-206ENST00000474421 ERVK-7P63135 1459 aa31.57■■■□□ 2.64
PDLIM4-206ENST00000474421 ZNF335Q9H4Z2 1342 aaPredicted RBP31.55■■■□□ 2.64
PDLIM4-206ENST00000474421 ANKLE2Q86XL3 938 aa31.55■■■□□ 2.64
PDLIM4-206ENST00000474421 CHIC2Q9UKJ5 165 aa31.53■■■□□ 2.64
PDLIM4-206ENST00000474421 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.53■■■□□ 2.64
PDLIM4-206ENST00000474421 DEPDC5O75140 1603 aa31.53■■■□□ 2.64
PDLIM4-206ENST00000474421 CFAP65Q6ZU64 1925 aaKnown RBP31.52■■■□□ 2.64
PDLIM4-206ENST00000474421 KANK1Q14678 1352 aa31.52■■■□□ 2.64
PDLIM4-206ENST00000474421 ARHGAP31Q2M1Z3 1444 aa31.51■■■□□ 2.64
PDLIM4-206ENST00000474421 NEURL4Q96JN8 1562 aa31.51■■■□□ 2.63
PDLIM4-206ENST00000474421 FAM50AQ14320 339 aaKnown RBP31.5■■■□□ 2.63
PDLIM4-206ENST00000474421 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.49■■■□□ 2.63
PDLIM4-206ENST00000474421 ADGRL2O95490 1459 aa31.47■■■□□ 2.63
PDLIM4-206ENST00000474421 MED14O60244 1454 aa31.44■■■□□ 2.62
PDLIM4-206ENST00000474421 NPHP4O75161 1426 aaPredicted RBP31.41■■■□□ 2.62
PDLIM4-206ENST00000474421 LMTK2Q8IWU2 1503 aa31.4■■■□□ 2.62
PDLIM4-206ENST00000474421 UBR1Q8IWV7 1749 aa31.39■■■□□ 2.62
PDLIM4-206ENST00000474421 VWDEQ8N2E2 1590 aa31.39■■■□□ 2.61
PDLIM4-206ENST00000474421 CPS1P31327 1500 aa31.38■■■□□ 2.61
PDLIM4-206ENST00000474421 IQGAP1P46940 1657 aa31.37■■■□□ 2.61
PDLIM4-206ENST00000474421 ANKRD50Q9ULJ7 1429 aa31.34■■■□□ 2.61
PDLIM4-206ENST00000474421 UBAP1LF5GYI3 381 aa31.33■■■□□ 2.61
PDLIM4-206ENST00000474421 EFCAB6Q5THR3 1501 aa31.29■■■□□ 2.6
PDLIM4-206ENST00000474421 SLIT1O75093 1534 aa31.29■■■□□ 2.6
PDLIM4-206ENST00000474421 SCAF11Q99590 1463 aaKnown RBP31.28■■■□□ 2.6
PDLIM4-206ENST00000474421 ARHGAP23Q9P227 1491 aa31.28■■■□□ 2.6
PDLIM4-206ENST00000474421 STAG3Q9UJ98 1225 aa31.27■■■□□ 2.6
PDLIM4-206ENST00000474421 KDM5AP29375 1690 aaKnown RBP31.27■■■□□ 2.6
PDLIM4-206ENST00000474421 PIK3C2BO00750 1634 aa31.27■■■□□ 2.6
PDLIM4-206ENST00000474421 EID1Q9Y6B2 187 aa31.26■■■□□ 2.59
PDLIM4-206ENST00000474421 ROCK1Q13464 1354 aa31.25■■■□□ 2.59
PDLIM4-206ENST00000474421 TXNDC2Q86VQ3 553 aa31.24■■■□□ 2.59
PDLIM4-206ENST00000474421 RPRD2Q5VT52 1461 aaKnown RBP31.23■■■□□ 2.59
PDLIM4-206ENST00000474421 NOS1P29475 1434 aa31.23■■■□□ 2.59
PDLIM4-206ENST00000474421 IDI1Q13907 227 aa31.21■■■□□ 2.59
PDLIM4-206ENST00000474421 TMEM2Q9UHN6 1383 aa31.2■■■□□ 2.59
PDLIM4-206ENST00000474421 LTKP29376 864 aa31.2■■■□□ 2.59
PDLIM4-206ENST00000474421 SYNMO15061 1565 aa31.2■■■□□ 2.58
PDLIM4-206ENST00000474421 TOM1O60784 492 aa31.19■■■□□ 2.58
PDLIM4-206ENST00000474421 SLC52A1Q9NWF4 448 aa31.19■■■□□ 2.58
PDLIM4-206ENST00000474421 TET3O43151 1660 aa31.19■■■□□ 2.58
PDLIM4-206ENST00000474421 UNC13BO14795 1591 aa31.17■■■□□ 2.58
PDLIM4-206ENST00000474421 GCC2Q8IWJ2 1684 aa31.14■■■□□ 2.58
PDLIM4-206ENST00000474421 PPARGC1BQ86YN6 1023 aaKnown RBP31.13■■■□□ 2.57
PDLIM4-206ENST00000474421 ADGRB3O60242 1522 aa31.13■■■□□ 2.57
PDLIM4-206ENST00000474421 STRCP1A6NGW2 1772 aa31.12■■■□□ 2.57
PDLIM4-206ENST00000474421 ITGAEP38570 1179 aa31.1■■■□□ 2.57
PDLIM4-206ENST00000474421 DISP3Q9P2K9 1392 aa31.09■■■□□ 2.57
PDLIM4-206ENST00000474421 LRRC7Q96NW7 1537 aa31.08■■■□□ 2.57
PDLIM4-206ENST00000474421 SCAF1Q9H7N4 1312 aaKnown RBP31.08■■■□□ 2.57
PDLIM4-206ENST00000474421 PIP4K2BP78356 416 aa31.07■■■□□ 2.56
PDLIM4-206ENST00000474421 IQGAP3Q86VI3 1631 aa31.06■■■□□ 2.56
PDLIM4-206ENST00000474421 E9PCH4 1651 aa31.01■■■□□ 2.55
PDLIM4-206ENST00000474421 NUP155O75694 1391 aa31.01■■■□□ 2.55
PDLIM4-206ENST00000474421 HDGFP51858 240 aaKnown RBP31■■■□□ 2.55
PDLIM4-206ENST00000474421 RRBP1Q9P2E9 1410 aaKnown RBP30.98■■■□□ 2.55
PDLIM4-206ENST00000474421 MYO5BQ9ULV0 1848 aa30.97■■■□□ 2.55
PDLIM4-206ENST00000474421 TMEM131LA2VDJ0 1609 aa30.96■■■□□ 2.55
PDLIM4-206ENST00000474421 ALKQ9UM73 1620 aa30.95■■■□□ 2.55
PDLIM4-206ENST00000474421 HSPA1LP34931 641 aa30.95■■■□□ 2.55
PDLIM4-206ENST00000474421 ZFYVE9O95405 1425 aa30.93■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms