RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 MROH2AA6NES4 1674 aa21.75■■□□□ 1.07
VAMP4-203ENST00000474047 LMTK3Q96Q04 1460 aa21.74■■□□□ 1.07
VAMP4-203ENST00000474047 SETD1BQ9UPS6 1966 aaKnown RBP21.73■■□□□ 1.07
VAMP4-203ENST00000474047 ITGAEP38570 1179 aa21.72■■□□□ 1.07
VAMP4-203ENST00000474047 HSPA2P54652 639 aa21.72■■□□□ 1.07
VAMP4-203ENST00000474047 UHRF1BP1Q6BDS2 1440 aa21.71■■□□□ 1.07
VAMP4-203ENST00000474047 PREX1Q8TCU6 1659 aa21.71■■□□□ 1.07
VAMP4-203ENST00000474047 EIF2AK4Q9P2K8 1649 aaKnown RBP21.7■■□□□ 1.06
VAMP4-203ENST00000474047 NCOA1Q15788 1441 aa21.69■■□□□ 1.06
VAMP4-203ENST00000474047 KDM5DQ9BY66 1539 aa21.69■■□□□ 1.06
VAMP4-203ENST00000474047 ERBINQ96RT1 1412 aa21.68■■□□□ 1.06
VAMP4-203ENST00000474047 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.68■■□□□ 1.06
VAMP4-203ENST00000474047 NPATQ14207 1427 aa21.67■■□□□ 1.06
VAMP4-203ENST00000474047 FAM135AQ9P2D6 1515 aa21.67■■□□□ 1.06
VAMP4-203ENST00000474047 RNF17Q9BXT8 1623 aaKnown RBP21.66■■□□□ 1.06
VAMP4-203ENST00000474047 ADGRL2O95490 1459 aa21.65■■□□□ 1.06
VAMP4-203ENST00000474047 KANK1Q14678 1352 aa21.64■■□□□ 1.05
VAMP4-203ENST00000474047 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.64■■□□□ 1.05
VAMP4-203ENST00000474047 PTPRKQ15262 1439 aa21.63■■□□□ 1.05
VAMP4-203ENST00000474047 FBXO31Q5XUX0 539 aaPredicted RBP21.61■■□□□ 1.05
VAMP4-203ENST00000474047 ZC3H13Q5T200 1668 aaKnown RBP21.59■■□□□ 1.05
VAMP4-203ENST00000474047 ABCC3O15438 1527 aa21.59■■□□□ 1.05
VAMP4-203ENST00000474047 PZPP20742 1482 aa21.59■■□□□ 1.05
VAMP4-203ENST00000474047 ANKRD50Q9ULJ7 1429 aa21.59■■□□□ 1.05
VAMP4-203ENST00000474047 RRBP1Q9P2E9 1410 aaKnown RBP21.58■■□□□ 1.05
VAMP4-203ENST00000474047 ROCK1Q13464 1354 aa21.58■■□□□ 1.04
VAMP4-203ENST00000474047 MROH1Q8NDA8 1641 aa21.57■■□□□ 1.04
VAMP4-203ENST00000474047 TNRQ92752 1358 aa21.57■■□□□ 1.04
VAMP4-203ENST00000474047 CEP152O94986 1710 aa21.56■■□□□ 1.04
VAMP4-203ENST00000474047 PRDM15P57071 1507 aaPredicted RBP21.55■■□□□ 1.04
VAMP4-203ENST00000474047 MYO3AQ8NEV4 1616 aa21.53■■□□□ 1.04
VAMP4-203ENST00000474047 DEPDC5O75140 1603 aa21.53■■□□□ 1.04
VAMP4-203ENST00000474047 DMRT2Q9Y5R5 561 aa21.52■■□□□ 1.04
VAMP4-203ENST00000474047 CAMSAP1Q5T5Y3 1602 aa21.52■■□□□ 1.04
VAMP4-203ENST00000474047 CFAP65Q6ZU64 1925 aaKnown RBP21.51■■□□□ 1.03
VAMP4-203ENST00000474047 CEP170BQ9Y4F5 1589 aaPredicted RBP21.5■■□□□ 1.03
VAMP4-203ENST00000474047 A2ML1A8K2U0 1454 aa21.48■■□□□ 1.03
VAMP4-203ENST00000474047 ZNF142P52746 1687 aaPredicted RBP21.47■■□□□ 1.03
VAMP4-203ENST00000474047 ERVK-7P63135 1459 aa21.46■■□□□ 1.03
VAMP4-203ENST00000474047 ARHGAP31Q2M1Z3 1444 aa21.46■■□□□ 1.03
VAMP4-203ENST00000474047 NLRP1Q9C000 1473 aa21.45■■□□□ 1.02
VAMP4-203ENST00000474047 THEMISQ8N1K5 641 aaPredicted RBP21.44■■□□□ 1.02
VAMP4-203ENST00000474047 FBXO41Q8TF61 875 aa21.44■■□□□ 1.02
VAMP4-203ENST00000474047 SPATA31D1Q6ZQQ2 1576 aa21.44■■□□□ 1.02
VAMP4-203ENST00000474047 STRCQ7RTU9 1775 aa21.43■■□□□ 1.02
VAMP4-203ENST00000474047 VWDEQ8N2E2 1590 aa21.43■■□□□ 1.02
VAMP4-203ENST00000474047 LMTK2Q8IWU2 1503 aa21.43■■□□□ 1.02
VAMP4-203ENST00000474047 NCKAP5LQ9HCH0 1330 aa21.42■■□□□ 1.02
VAMP4-203ENST00000474047 PKD2Q13563 968 aa21.41■■□□□ 1.02
VAMP4-203ENST00000474047 NUP155O75694 1391 aa21.41■■□□□ 1.02
VAMP4-203ENST00000474047 UNC13BO14795 1591 aa21.4■■□□□ 1.02
VAMP4-203ENST00000474047 UGGT1Q9NYU2 1555 aa21.4■■□□□ 1.02
VAMP4-203ENST00000474047 PLA2R1Q13018 1463 aa21.39■■□□□ 1.01
VAMP4-203ENST00000474047 STAG3Q9UJ98 1225 aa21.39■■□□□ 1.01
VAMP4-203ENST00000474047 EFCAB6Q5THR3 1501 aa21.38■■□□□ 1.01
VAMP4-203ENST00000474047 PTPRTO14522 1441 aa21.37■■□□□ 1.01
VAMP4-203ENST00000474047 ANKLE2Q86XL3 938 aa21.37■■□□□ 1.01
VAMP4-203ENST00000474047 NAIPQ13075 1403 aa21.35■■□□□ 1.01
VAMP4-203ENST00000474047 TET3O43151 1660 aa21.35■■□□□ 1.01
VAMP4-203ENST00000474047 RPRD2Q5VT52 1461 aaKnown RBP21.34■■□□□ 1.01
VAMP4-203ENST00000474047 TRIM52Q96A61 297 aa21.34■■□□□ 1.01
VAMP4-203ENST00000474047 GCC2Q8IWJ2 1684 aa21.32■■□□□ 1
VAMP4-203ENST00000474047 HFM1A2PYH4 1435 aa21.32■■□□□ 1
VAMP4-203ENST00000474047 IQGAP3Q86VI3 1631 aa21.32■■□□□ 1
VAMP4-203ENST00000474047 IDI1Q13907 227 aa21.32■■□□□ 1
VAMP4-203ENST00000474047 SLC52A1Q9NWF4 448 aa21.31■■□□□ 1
VAMP4-203ENST00000474047 NOS1P29475 1434 aa21.3■■□□□ 1
VAMP4-203ENST00000474047 UBR1Q8IWV7 1749 aa21.28■■□□□ 1
VAMP4-203ENST00000474047 POLR1AO95602 1720 aaPredicted RBP21.27■■□□□ 1
VAMP4-203ENST00000474047 EID1Q9Y6B2 187 aa21.27■■□□□ 1
VAMP4-203ENST00000474047 PIK3C2BO00750 1634 aa21.27■■□□□ 1
VAMP4-203ENST00000474047 SYNMO15061 1565 aa21.27■■□□□ 1
VAMP4-203ENST00000474047 E9PCH4 1651 aa21.26■□□□□ 0.99
VAMP4-203ENST00000474047 TXNDC2Q86VQ3 553 aa21.26■□□□□ 0.99
VAMP4-203ENST00000474047 CERKQ8TCT0 537 aa21.26■□□□□ 0.99
VAMP4-203ENST00000474047 CHGAP10645 457 aaKnown RBP21.25■□□□□ 0.99
VAMP4-203ENST00000474047 NPHP4O75161 1426 aaPredicted RBP21.22■□□□□ 0.99
VAMP4-203ENST00000474047 SLC4A1APQ9BWU0 796 aaKnown RBP21.21■□□□□ 0.99
VAMP4-203ENST00000474047 ZNF335Q9H4Z2 1342 aaPredicted RBP21.2■□□□□ 0.98
VAMP4-203ENST00000474047 NEURL4Q96JN8 1562 aa21.2■□□□□ 0.98
VAMP4-203ENST00000474047 SCAF11Q99590 1463 aaKnown RBP21.2■□□□□ 0.98
VAMP4-203ENST00000474047 TMEM2Q9UHN6 1383 aa21.2■□□□□ 0.98
VAMP4-203ENST00000474047 LTKP29376 864 aa21.19■□□□□ 0.98
VAMP4-203ENST00000474047 KDM5AP29375 1690 aaKnown RBP21.19■□□□□ 0.98
VAMP4-203ENST00000474047 ADGRB3O60242 1522 aa21.18■□□□□ 0.98
VAMP4-203ENST00000474047 SLIT1O75093 1534 aa21.18■□□□□ 0.98
VAMP4-203ENST00000474047 HDGFP51858 240 aaKnown RBP21.18■□□□□ 0.98
VAMP4-203ENST00000474047 MED14O60244 1454 aa21.18■□□□□ 0.98
VAMP4-203ENST00000474047 ARHGAP23Q9P227 1491 aa21.17■□□□□ 0.98
VAMP4-203ENST00000474047 BCANQ96GW7 911 aa21.17■□□□□ 0.98
VAMP4-203ENST00000474047 SETD5Q9C0A6 1442 aa21.16■□□□□ 0.98
VAMP4-203ENST00000474047 IQGAP1P46940 1657 aa21.16■□□□□ 0.98
VAMP4-203ENST00000474047 ACIN1Q9UKV3 1341 aaKnown RBP21.16■□□□□ 0.98
VAMP4-203ENST00000474047 PPP1R15AO75807 674 aaPredicted RBP21.15■□□□□ 0.98
VAMP4-203ENST00000474047 SPHKAPQ2M3C7 1700 aa21.13■□□□□ 0.97
VAMP4-203ENST00000474047 LTBP4Q8N2S1 1624 aa21.13■□□□□ 0.97
VAMP4-203ENST00000474047 TMEM131LA2VDJ0 1609 aa21.11■□□□□ 0.97
VAMP4-203ENST00000474047 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.11■□□□□ 0.97
VAMP4-203ENST00000474047 MYO5BQ9ULV0 1848 aa21.11■□□□□ 0.97
VAMP4-203ENST00000474047 SENP3Q9H4L4 574 aaPredicted RBP21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms